The FBF-2/LST-1/gld-1 RNA complex (one FBF-2)
Qiu C, Crittenden SL, Carrick BH, Dillard LB, Costa Dos Santos SJ, Dandey VP, Dutcher RC, Viverette EG, Wine RN, Woodworth J, Campbell ZT, Wickens M, Borgnia MJ, Kimble J, Hall TMT
Nat Commun (2025) 16 pp. 123-123 [ Pubmed: 39747099 DOI: doi:10.1038/s41467-024-55526-x ]
The FBF-2/LST-1/gld-1 RNA complex (two FBF-2)
Qiu C, Crittenden SL, Carrick BH, Dillard LB, Costa Dos Santos SJ, Dandey VP, Dutcher RC, Viverette EG, Wine RN, Woodworth J, Campbell ZT, Wickens M, Borgnia MJ, Kimble J, Hall TMT
Nat Commun (2025) 16 pp. 123-123 [ Pubmed: 39747099 DOI: doi:10.1038/s41467-024-55526-x ]
- Fbf-2 (Protein from Caenorhabditis elegans)
- Lst-1 (Protein from Caenorhabditis elegans)
- Gld-1 rna (RNA from Caenorhabditis elegans)
- Ternary complex of fbf-2 with lst-1 and rna (Complex from Caenorhabditis elegans)
Cryo-electron tomography of wildtype LAF-1 RGG domain protein condensates with fibrous necks
Rizvi A, Favetta B, Jaber N, Lee YK, Jiang J, Idris NS, Schuster BS, Dai W, Patterson JP
Nanoscale (2024) 16 pp. 16706-16717 [ Pubmed: 39171763 DOI: doi:10.1039/d4nr01877j ]
Cryo-Electron Tomography of Wildtype LAF-1 RGG Domain Condensate with Core/Shell Structure
Rizvi A, Favetta B, Jaber N, Lee YK, Jiang J, Idris NS, Schuster BS, Dai W, Patterson JP
Nanoscale (2024) 16 pp. 16706-16717 [ Pubmed: 39171763 DOI: doi:10.1039/d4nr01877j ]
Cryo-Electron Tomography of Wildtype LAF-1 RGG domain Condensate
Rizvi A, Favetta B, Jaber N, Lee YK, Jiang J, Idris NS, Schuster BS, Dai W, Patterson JP
Nanoscale (2024) 16 pp. 16706-16717 [ Pubmed: 39171763 DOI: doi:10.1039/d4nr01877j ]
Resolution: 2.21 Å
EM Method: Single-particle
Fitted PDBs: 8xbs
Q-score: 0.663
Wang R, Cong Y, Qian D, Yan C, Gong D
Nucleic Acids Res (2024) 52 pp. 6718-6727 [ Pubmed: 38742627 DOI: doi:10.1093/nar/gkae395 ]
- Dimer of sid1 (Complex from Caenorhabditis elegans)
- Zinc ion (65 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Systemic rna interference defective protein 1 (90 kDa, Protein from Caenorhabditis elegans)
- Cholesterol (386 Da, Ligand)
- (2s)-3-(hexadecanoyloxy)-2-[(9z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate (760 Da, Ligand)
C. elegans SID1 in complex with dsRNA
Resolution: 2.21 Å
EM Method: Single-particle
Fitted PDBs: 8xc1
Q-score: 0.566
Wang R, Cong Y, Qian D, Yan C, Gong D
Nucleic Acids Res (2024) 52 pp. 6718-6727 [ Pubmed: 38742627 DOI: doi:10.1093/nar/gkae395 ]
- Zinc ion (65 Da, Ligand)
- Rna (50-mer) (16 kDa, RNA from Arabidopsis thaliana)
- Rna (50-mer) (15 kDa, RNA from Arabidopsis thaliana)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Complex of sid1 and dsrna (Complex)
- Rna (Complex from Arabidopsis thaliana)
- Sid1 (Complex from Caenorhabditis elegans)
- Systemic rna interference defective protein 1 (90 kDa, Protein from Caenorhabditis elegans)
- Cholesterol (386 Da, Ligand)
- (2s)-3-(hexadecanoyloxy)-2-[(9z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate (760 Da, Ligand)
Sub-tomogram average of the C. elegans ATP synthase dimer
Buzzard E, McLaren M, Bragoszewski P, Brancaccio A, Ford H, Daum B, Kuwabara P, Collinson I, Gold V
Biochem J (2024) 481 pp. 161-175 [ Pubmed: 38164968 DOI: doi:10.1042/BCJ20230450 ]
cryo-EM structure of a CED-4 hexamer
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 8jns
Q-score: 0.263
Life Sci Alliance (2023) 6 [ DOI: doi:10.26508/lsa.202302056 Pubmed: 37402593 ]
- Ced-4 hexamer (Complex from Caenorhabditis elegans)
- Cell death protein 4 (62 kDa, Protein from Caenorhabditis elegans)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
The Cryo-EM structure of a heptameric CED-4/CED-3 catalytic complex
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8jo0
Q-score: 0.303
Life Sci Alliance (2023) 6 [ DOI: doi:10.26508/lsa.202302056 Pubmed: 37402593 ]
- Cell death protein 4 (12 kDa, Protein from Caenorhabditis elegans)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Heptameric ced-4/ced-3 catalytic complex (Complex from Caenorhabditis elegans)
- Cell death protein 4 (62 kDa, Protein from Caenorhabditis elegans)