Cryo-EM structure of Caenorhabditis elegans DPF-3 (apo)
Resolution: 2.64 Å
EM Method: Single-particle
Fitted PDBs: 8pba
Q-score: 0.526
Gudipati RK, Gaidatzis D, Seebacher J, Muehlhaeusser S, Kempf G, Cavadini S, Hess D, Soneson C, Grosshans H
Mol.Syst.Biol. (2024) 20 pp. 1303-1328 [ Pubmed: 39468329 DOI: doi:10.1038/s44320-024-00071-4 ]
Undocked INX-6 hemichannel in a nanodisc
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6kff
Q-score: 0.46
Burendei B, Shinozaki R, Watanabe M, Terada T, Tani K, Fujiyoshi Y, Oshima A
Sci Adv (2020) 6 pp. eaax3157-eaax3157 [ DOI: doi:10.1126/sciadv.aax3157 Pubmed: 32095518 ]
- Innexin-6 (45 kDa, Protein from Caenorhabditis elegans)
- Octameric complex of innexin-6 (Complex from Caenorhabditis elegans)
Undocked INX-6 hemichannel in detergent
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6kfg
Q-score: 0.456
Burendei B, Shinozaki R, Watanabe M, Terada T, Tani K, Fujiyoshi Y, Oshima A
Sci Adv (2020) 6 pp. eaax3157-eaax3157 [ DOI: doi:10.1126/sciadv.aax3157 Pubmed: 32095518 ]
- Innexin-6 (45 kDa, Protein from Caenorhabditis elegans)
- Octameric complex of innexin-6 (Complex from Caenorhabditis elegans)
Undocked hemichannel of an N-terminal deletion mutant of INX-6 in a nanodisc
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6kfh
Q-score: 0.488
Burendei B, Shinozaki R, Watanabe M, Terada T, Tani K, Fujiyoshi Y, Oshima A
Sci Adv (2020) 6 pp. eaax3157-eaax3157 [ DOI: doi:10.1126/sciadv.aax3157 Pubmed: 32095518 ]
- Innexin-6 (45 kDa, Protein from Caenorhabditis elegans)
- Octameric complex of innexin-6 (Complex from Caenorhabditis elegans)
Katanin hexamer in the spiral conformation in complex with substrate
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6ugd
Q-score: 0.506
Zehr EA, Szyk A, Szczesna E, Roll-Mecak A
Dev Cell (2020) 52 pp. 118-131.e6 [ Pubmed: 31735665 DOI: doi:10.1016/j.devcel.2019.10.010 ]
- Hexameric complex of c.elegans katanin bound to polyglutamate peptide (312 kDa, Complex from Caenorhabditis elegans)
- Meiotic spindle formation protein mei-1 (53 kDa, Protein from Caenorhabditis elegans)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Polyglutamate peptide (1 kDa, Protein from synthetic construct)
Katanin hexamer in the ring conformation in complex with substrate
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6uge
Q-score: 0.452
Zehr EA, Szyk A, Szczesna E, Roll-Mecak A
Dev Cell (2020) 52 pp. 118-131.e6 [ Pubmed: 31735665 DOI: doi:10.1016/j.devcel.2019.10.010 ]
- Polyglutamate peptide (1 kDa, Protein from synthetic construct)
- Hexameric complex of c.elegans katanin bound to polyglutamate peptide (312 kDa, Complex from Caenorhabditis elegans)
- Meiotic spindle formation protein mei-1 (53 kDa, Protein from Caenorhabditis elegans)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
Katanin hexamer in the ring conformation with resolved protomer one in complex with substrate
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 6ugf
Q-score: 0.392
Zehr EA, Szyk A, Szczesna E, Roll-Mecak A
Dev Cell (2020) 52 pp. 118-131.e6 [ Pubmed: 31735665 DOI: doi:10.1016/j.devcel.2019.10.010 ]
- Polyglutamate peptide (1 kDa, Protein from synthetic construct)
- Hexameric complex of c.elegans katanin bound to polyglutamate peptide (312 kDa, Complex from Caenorhabditis elegans)
- Meiotic spindle formation protein mei-1 (53 kDa, Protein from Caenorhabditis elegans)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
katanin hexamer in spiral conformation
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 5wc0
Q-score: 0.313
Zehr E, Szyk A, Piszczek G, Szczesna E, Zuo X, Roll-Mecak A
Nat Struct Mol Biol (2017) 24 pp. 717-725 [ DOI: doi:10.1038/nsmb.3448 Pubmed: 28783150 ]
- Katanin (310 kDa, Complex from Caenorhabditis elegans)
- Meiotic spindle formation protein mei-1 (51 kDa, Protein from Caenorhabditis elegans)
- Adenosine-5'-triphosphate (507 Da, Ligand)
Katanin hexamer in the ring conformation
Resolution: 6.0 Å
EM Method: Single-particle
Fitted PDBs: 5wcb
Q-score: 0.232
Zehr E, Szyk A, Piszczek G, Szczesna E, Zuo X, Roll-Mecak A
Nat Struct Mol Biol (2017) 24 pp. 717-725 [ DOI: doi:10.1038/nsmb.3448 Pubmed: 28783150 ]
- Katanin (310 kDa, Complex from Caenorhabditis elegans)
- Meiotic spindle formation protein mei-1 (51 kDa, Protein from Caenorhabditis elegans)
- Adenosine-5'-triphosphate (507 Da, Ligand)
Cryo-EM structure of a Separase-Securin complex from Caenorhabditis elegans at 3.8 A resolution
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 5mz6
Q-score: 0.417
Boland A, Martin TG, Zhang Z, Yang J, Bai XC, Chang L, Scheres SH, Barford D
Nat Struct Mol Biol (2017) 24 pp. 414-418 [ DOI: doi:10.1038/nsmb.3386 Pubmed: 28263324 ]
- Interactor of fizzy protein (27 kDa, Protein from Caenorhabditis elegans)
- Caenorhabditis elegans separase-securin complex (170 kDa, Complex from Caenorhabditis elegans)
- Separase (144 kDa, Protein from Caenorhabditis elegans)