DdmD dimer in complex with ssDNA
Resolution: 3.04 Å
EM Method: Single-particle
Fitted PDBs: 8u0u
Q-score: 0.479
Bravo JPK, Ramos DA, Fregoso Ocampo R, Ingram C, Taylor DW
Nature (2024) 630 pp. 961-967 [ DOI: doi:10.1038/s41586-024-07515-9 Pubmed: 38740055 ]
- Helicase/uvrb n-terminal domain-containing protein (Complex from Vibrio cholerae)
- Dna (Complex)
- Ddmd (Complex)
- Dna (5'-d(p*tp*tp*ap*tp*tp*tp*tp*tp*tp*tp*t)-3') (3 kDa, DNA from synthetic construct)
- Helicase/uvrb n-terminal domain-containing protein (136 kDa, Protein from Vibrio cholerae)
DdmD monomer in complex with ssDNA
Resolution: 2.99 Å
EM Method: Single-particle
Fitted PDBs: 8u0w
Q-score: 0.489
Bravo JPK, Ramos DA, Fregoso Ocampo R, Ingram C, Taylor DW
Nature (2024) 630 pp. 961-967 [ DOI: doi:10.1038/s41586-024-07515-9 Pubmed: 38740055 ]
- Ddmd (Complex from Vibrio cholerae)
- Dna (5'-d(p*tp*tp*ap*tp*tp*tp*tp*tp*tp*tp*tp*t)-3') (3 kDa, DNA from synthetic construct)
- Helicase/uvrb n-terminal domain-containing protein (140 kDa, Protein from Vibrio cholerae)
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 8u3k
Q-score: 0.545
Bravo JPK, Ramos DA, Fregoso Ocampo R, Ingram C, Taylor DW
Nature (2024) 630 pp. 961-967 [ DOI: doi:10.1038/s41586-024-07515-9 Pubmed: 38740055 ]
- Ddme (79 kDa, Protein from Vibrio cholerae)
- Dna (5'-d(p*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*t)-3') (3 kDa, DNA from synthetic construct)
- Helicase/uvrb n-terminal domain-containing protein (140 kDa, Protein from Vibrio cholerae)
- Magnesium ion (24 Da, Ligand)
- Ddmd apo dimer (Complex from Vibrio cholerae)
- Dna (29-mer) (8 kDa, DNA from synthetic construct)
- Dna (5'-d(p*gp*gp*ap*ap*ap*tp*gp*tp*tp*gp*ap*ap*tp*ap*c)-3') (4 kDa, DNA from synthetic construct)
DdmE in complex with guide and target DNA
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8u0j
Q-score: 0.459
Bravo JPK, Ramos DA, Fregoso Ocampo R, Ingram C, Taylor DW
Nature (2024) 630 pp. 961-967 [ DOI: doi:10.1038/s41586-024-07515-9 Pubmed: 38740055 ]
- Dna (5'-d(p*gp*tp*tp*ap*gp*ap*cp*tp*tp*tp*ap*ap*gp*t)-3') (4 kDa, DNA from synthetic construct)
- Ddme (78 kDa, Protein from Vibrio cholerae)
- Dna (5'-d(p*ap*cp*tp*tp*ap*ap*ap*gp*tp*cp*tp*ap*ap*cp*cp*tp*ap*tp*ap*gp*gp*ap*t)-3') (7 kDa, DNA from synthetic construct)
- Magnesium ion (24 Da, Ligand)
- Ddme (211 kDa, Complex from Streptococcus pyogenes)
- Dna (5'-d(p*ap*tp*cp*cp*tp*ap*tp*ap*gp*gp*a)-3') (3 kDa, DNA from synthetic construct)
DdmD dimer apoprotein (CASP target)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9bqv
Q-score: 0.456
Bravo JPK, Ramos DA, Fregoso Ocampo R, Ingram C, Taylor DW
Nature (2024) 630 pp. 961-967 [ DOI: doi:10.1038/s41586-024-07515-9 Pubmed: 38740055 ]
- Helicase/uvrb n-terminal domain-containing protein (136 kDa, Protein from Vibrio cholerae)
- Ddmd apo dimer (211 kDa, Complex from Streptococcus pyogenes)