Portal-tail of Vibrio cholerae typing phage mature VP1
Pang H, Fan F, Zheng J, Xiao H, Tan Z, Song J, Kan B, Liu H
Structure (2024) 32 pp. 2364-2374.e2 [ Pubmed: 39471801 DOI: doi:10.1016/j.str.2024.10.005 ]
- Gp13 (10 kDa, Protein from Vibrio cholerae)
- Adaptor gp12 (23 kDa, Protein from Vibrio cholerae)
- Vibrio cholerae phage (Virus from Vibrio cholerae phage)
- Portal gp5 (73 kDa, Protein from Vibrio cholerae)
- Nozzle gp16 (59 kDa, Protein from Vibrio cholerae)
- Ring protein gp10 (26 kDa, Protein from Vibrio cholerae)
portal-tail of Vibrio cholerae typing phage release VP1
Pang H, Fan F, Zheng J, Xiao H, Tan Z, Song J, Kan B, Liu H
Structure (2024) 32 pp. 2364-2374.e2 [ Pubmed: 39471801 DOI: doi:10.1016/j.str.2024.10.005 ]
- Adaptor of release vp1 (23 kDa, Protein from Vibrio cholerae)
- Nozzle of release vp1 (58 kDa, Protein from Vibrio cholerae)
- Vibrio cholerae phage (Virus from Vibrio cholerae phage)
- Portal of release vp1 (66 kDa, Protein from Vibrio cholerae)
- Ring protein of release vp1 (26 kDa, Protein from Vibrio cholerae)
Capsid of Vibrio cholerae phage mature VP1
Pang H, Fan F, Zheng J, Xiao H, Tan Z, Song J, Kan B, Liu H
Structure (2024) 32 pp. 2364-2374.e2 [ Pubmed: 39471801 DOI: doi:10.1016/j.str.2024.10.005 ]
- Major capsid of vp1 (43 kDa, Protein from Vibrio cholerae)
- Vibrio cholerae phage (Virus from Vibrio cholerae phage)
- Shp of vp1 (11 kDa, Protein from Vibrio cholerae)
Resolution: 3.23 Å
EM Method: Single-particle
Fitted PDBs: 7t9f
Q-score: 0.432
Sauer DB, Marden JJ, Sudar JC, Song J, Mulligan C, Wang DN
Nat Commun (2022) 13 pp. 2644-2644 [ DOI: doi:10.1038/s41467-022-30406-4 Pubmed: 35551191 ]
Resolution: 2.83 Å
EM Method: Single-particle
Fitted PDBs: 7t9g
Q-score: 0.572
Sauer DB, Marden JJ, Sudar JC, Song J, Mulligan C, Wang DN
Nat Commun (2022) 13 pp. 2644-2644 [ DOI: doi:10.1038/s41467-022-30406-4 Pubmed: 35551191 ]
- Sodium ion (22 Da, Ligand)
- Dass family sodium-coupled anion symporter (48 kDa, Protein from Vibrio cholerae)
- Water (18 Da, Ligand)
- Vcindy in the ci-na+ state (Cellular component from Vibrio cholerae)
Structure of VcINDY-Na+ in amphipol
Resolution: 3.16 Å
EM Method: Single-particle
Fitted PDBs: 6wu3
Q-score: 0.5
Sauer DB, Trebesch N, Marden JJ, Cocco N, Song J, Koide A, Koide S, Tajkhorshid E, Wang DN
eLife (2020) 9 [ DOI: doi:10.7554/eLife.61350 Pubmed: 32869741 ]
Structure of VcINDY-Na-Fab84 in nanodisc
Resolution: 3.15 Å
EM Method: Single-particle
Fitted PDBs: 6ww5
Q-score: 0.502
Sauer DB, Trebesch N, Marden JJ, Cocco N, Song J, Koide A, Koide S, Tajkhorshid E, Wang DN
eLife (2020) 9 [ DOI: doi:10.7554/eLife.61350 Pubmed: 32869741 ]
- Hexane (86 Da, Ligand)
- Complex of vcindy and fab84 (Cellular component from Vibrio cholerae)
- Fab84 heavy chain (28 kDa, Protein from Homo sapiens)
- Fab84 light chain (25 kDa, Protein from Homo sapiens)
- N-octane (114 Da, Ligand)
- 1,2-dihexanoyl-sn-glycero-3-phosphoethanolamine (410 Da, Ligand)
- Dass family sodium-coupled anion symporter (48 kDa, Protein from Vibrio cholerae)