Structure of human SPNS2 in LMNG
Resolution: 3.69 Å
EM Method: Single-particle
Fitted PDBs: 8qv5
Q-score: 0.42
Li HZ, Pike ACW, Chang YN, Prakaash D, Gelova Z, Stanka J, Moreau C, Scott HC, Wunder F, Wolf G, Scacioc A, McKinley G, Batoulis H, Mukhopadhyay S, Garofoli A, Pinto-Fernandez A, Kessler BM, Burgess-Brown NA, Stefanic S, Wiedmer T, Durr KL, Puetter V, Ehrmann A, Khalid S, Ingles-Prieto A, Superti-Furga G, Sauer DB
Nat Commun (2025) 16 pp. 721-721 [ DOI: doi:10.1038/s41467-025-55942-7 Pubmed: 39820269 ]
- Complex of spns2 with nanobody d12 (74 kDa, Complex from Homo sapiens)
- Sphingosine-1-phosphate transporter spns2 (58 kDa, Protein from Homo sapiens)
- Nanobody d12 (15 kDa, Protein from Vicugna pacos)
Structure of human SPNS2 in DDM
Resolution: 3.68 Å
EM Method: Single-particle
Fitted PDBs: 8qv6
Q-score: 0.424
Li HZ, Pike ACW, Chang YN, Prakaash D, Gelova Z, Stanka J, Moreau C, Scott HC, Wunder F, Wolf G, Scacioc A, McKinley G, Batoulis H, Mukhopadhyay S, Garofoli A, Pinto-Fernandez A, Kessler BM, Burgess-Brown NA, Stefanic S, Wiedmer T, Durr KL, Puetter V, Ehrmann A, Khalid S, Ingles-Prieto A, Superti-Furga G, Sauer DB
Nat Commun (2025) 16 pp. 721-721 [ DOI: doi:10.1038/s41467-025-55942-7 Pubmed: 39820269 ]
- Complex of spns2 with nanobody d12 (74 kDa, Complex from Homo sapiens)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Sphingosine-1-phosphate transporter spns2 (58 kDa, Protein from Homo sapiens)
- Nanobody d12 (15 kDa, Protein from Vicugna pacos)
Cryo-EM structure of PRMT5/WDR77 in complex with 6S complex (GRG local refine)
Resolution: 3.19 Å
EM Method: Single-particle
Fitted PDBs: 9e3c
Q-score: 0.508
Jin CY, Hunkeler M, Mulvaney KM, Sellers WR, Fischer ES
J Biol Chem (2025) 301 pp. 108165-108165 [ DOI: doi:10.1016/j.jbc.2025.108165 Pubmed: 39793893 ]
- Methylosome subunit picln (Complex)
- Sinefungin (381 Da, Ligand)
- Prmt5/wdr77 in complex with 6s (grg active site local refine) (770 kDa, Complex)
- 6s complex (Complex from Homo sapiens)
- Small nuclear ribonucleoproteins e, f, g (Complex)
- Small nuclear ribonucleoprotein sm d1 (13 kDa, Protein from Homo sapiens)
- Protein arginine n-methyltransferase 5 (72 kDa, Protein from Homo sapiens)
- Small nuclear ribonucleoprotein sm d1 (Complex)
- Prmt5/wdr77 (Complex from Homo sapiens)
Cryo-EM structure of the SKP1-FBXO3 complex
Resolution: 3.74 Å
EM Method: Single-particle
Fitted PDBs: 9kbf
Q-score: 0.41
Proteins (2025) [ Pubmed: 39921442 DOI: doi:10.1002/prot.26809 ]
- Cryo-em of the cul1-rbx1-skp1-fbxo3 scf ubiquition ligase complex (Complex from Homo sapiens)
- F-box only protein 3 (50 kDa, Protein from Homo sapiens)
- S-phase kinase-associated protein 1 (18 kDa, Protein from Homo sapiens)
Cryo-EM structure of the C1q A, B-crt, C peptide full assembly
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 9c9u
Q-score: 0.265
Kreutzberger MAB, Yu LT, Bui TH, Hancu MC, Purdy MD, Osinski T, Kasson PM, Egelman EH, Hartgerink JD
ACS Cent Sci (2025) [ DOI: doi:10.1021/acscentsci.5c00018 ]
- Complement c1q subcomponent subunit a (3 kDa, Protein from Homo sapiens)
- Complement c1q subcomponent subunit c (3 kDa, Protein from Homo sapiens)
- Complement c1q subcomponent subunit b (4 kDa, Protein from Homo sapiens)
- The c1q a, b-crt, c peptide assembly (Complex from Homo sapiens)
Resolution: 3.47 Å
EM Method: Single-particle
Fitted PDBs: 9cb3
Q-score: 0.385
Ngoi P, Wang X, Putta S, Da Luz RF, Serrao VHB, Emanuele MJ, Rubin SM
bioRxiv (2025) [ Pubmed: 39868286 DOI: doi:10.1101/2025.01.15.633208 ]
- S-phase kinase-associated protein 1 (18 kDa, Protein from Homo sapiens)
- E2f1-cyclinf-skp1 (91 kDa, Complex from Homo sapiens)
- Cyclin-f (71 kDa, Protein from Homo sapiens)
- E2f1 peptide (1 kDa, Protein from Homo sapiens)
Resolution: 2.88 Å
EM Method: Single-particle
Fitted PDBs: 8yht
Q-score: 0.373
Kim H, Adams C, Burtner A, Lee DS, Dobbins C, Criswell C, Coventry B, Kim HM, King N
To Be Published
- Htlr3/minibinder 8.6 complex (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Toll-like receptor 3 (76 kDa, Protein from Homo sapiens)
- Minibinder 7.7 (6 kDa, Protein from Homo sapiens)
Resolution: 2.88 Å
EM Method: Single-particle
Fitted PDBs: 8yhu
Q-score: 0.388
Kim H, Adams C, Burtner A, Lee DS, Dobbins C, Criswell C, Coventry B, Kim HM, King N
To Be Published
- Htlr3/minibinder 8.6 complex (Complex from Homo sapiens)
- Minibinder 8.6 (6 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Toll-like receptor 3 (76 kDa, Protein from Homo sapiens)
Cryo-EM structure of human apo GPR156
Resolution: 3.09 Å
EM Method: Single-particle
Fitted PDBs: 8yjp
Q-score: 0.396
Ma X, Chen LN, Liao M, Zhang L, Xi K, Guo J, Shen C, Shen DD, Cai P, Shen Q, Qi J, Zhang H, Zang SK, Dong YJ, Miao L, Qin J, Ji SY, Li Y, Liu J, Mao C, Zhang Y, Chai R
Nat Commun (2024) 15 pp. 10601-10601 [ Pubmed: 39638804 DOI: doi:10.1038/s41467-024-54681-5 ]
- Probable g-protein coupled receptor 156 (38 kDa, Protein from Homo sapiens)
- (21r,24r,27s)-24,27,28-trihydroxy-18,24-dioxo-19,23,25-trioxa-24lambda~5~-phosphaoctacosan-21-yl (9z)-octadec-9-enoate (777 Da, Ligand)
- Gpr156 (Cellular component from Homo sapiens)
- Cholesterol (386 Da, Ligand)
Human TOP3B-TDRD3 core complex in RNA rejoining state
Resolution: 3.01 Å
EM Method: Single-particle
Fitted PDBs: 9ca4
Q-score: 0.451
Yang X, Chen X, Yang W, Pommier Y
Nat Commun (2025) 16 pp. 834-834 [ Pubmed: 39828754 DOI: doi:10.1038/s41467-025-55959-y ]
- Tudor domain-containing protein 3 (17 kDa, Protein from Homo sapiens)
- Human top3b-tdrd3 core complex with rna (Complex from Homo sapiens)
- Dna topoisomerase 3-beta-1 (69 kDa, Protein from Homo sapiens)
- Rna (5'-r(p*ap*cp*up*ap*ap*a)-3') (1 kDa, RNA from Homo sapiens)
- Rna (5'-r(*ap*u)-3') (590 Da, RNA from Homo sapiens)
- Manganese (ii) ion (54 Da, Ligand)