Human collagen prolyl processing enzyme complex, P3H1/CRTAP heterodimer
Resolution: 3.65 Å
EM Method: Single-particle
Fitted PDBs: 8k0e
Q-score: 0.407
Li W, Peng J, Yao D, Rao B, Xia Y, Wang Q, Li S, Cao M, Shen Y, Ma P, Liao R, Qin A, Zhao J, Cao Y
Nat Commun (2024) 15 pp. 7844-7844 [ DOI: doi:10.1038/s41467-024-52321-6 Pubmed: 39245686 ]
- Cartilage-associated protein (50 kDa, Protein from Homo sapiens)
- Prolyl 3-hydroxylase 1 (83 kDa, Protein from Homo sapiens)
- A protein modification binary complex (Complex from Homo sapiens)
- Fe (iii) ion (55 Da, Ligand)
Human collagen prolyl processing enzyme complex, P3H1/CRTAP/PPIB heterotrimer, in its apo state
Resolution: 3.37 Å
EM Method: Single-particle
Fitted PDBs: 8k0f
Q-score: 0.512
Li W, Peng J, Yao D, Rao B, Xia Y, Wang Q, Li S, Cao M, Shen Y, Ma P, Liao R, Qin A, Zhao J, Cao Y
Nat Commun (2024) 15 pp. 7844-7844 [ DOI: doi:10.1038/s41467-024-52321-6 Pubmed: 39245686 ]
- Peptidyl-prolyl cis-trans isomerase b (28 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- A protein modification ternary complex (Complex from Homo sapiens)
- Cartilage-associated protein (50 kDa, Protein from Homo sapiens)
- Prolyl 3-hydroxylase 1 (83 kDa, Protein from Homo sapiens)
- Fe (iii) ion (55 Da, Ligand)
Resolution: 3.62 Å
EM Method: Single-particle
Fitted PDBs: 8k0i
Q-score: 0.435
Li W, Peng J, Yao D, Rao B, Xia Y, Wang Q, Li S, Cao M, Shen Y, Ma P, Liao R, Qin A, Zhao J, Cao Y
Nat Commun (2024) 15 pp. 7844-7844 [ DOI: doi:10.1038/s41467-024-52321-6 Pubmed: 39245686 ]
- Peptidyl-prolyl cis-trans isomerase b (28 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Prolyl 3-hydroxylase 1 (83 kDa, Protein from Homo sapiens)
- A protein modification hexamer complex (Complex from Homo sapiens)
- Cartilage-associated protein (50 kDa, Protein from Homo sapiens)
Resolution: 3.17 Å
EM Method: Single-particle
Fitted PDBs: 8k0m
Q-score: 0.531
Li W, Peng J, Yao D, Rao B, Xia Y, Wang Q, Li S, Cao M, Shen Y, Ma P, Liao R, Qin A, Zhao J, Cao Y
Nat Commun (2024) 15 pp. 7844-7844 [ DOI: doi:10.1038/s41467-024-52321-6 Pubmed: 39245686 ]
- Peptidyl-prolyl cis-trans isomerase b (28 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Prolyl 3-hydroxylase 1 (83 kDa, Protein from Homo sapiens)
- 2-oxoglutaric acid (146 Da, Ligand)
- Cartilage-associated protein (50 kDa, Protein from Homo sapiens)
- Fe (iii) ion (55 Da, Ligand)
- A protein modification complex bound with co-substrate (Complex from Homo sapiens)
Resolution: 3.18 Å
EM Method: Single-particle
Fitted PDBs: 8k17
Q-score: 0.554
Li W, Peng J, Yao D, Rao B, Xia Y, Wang Q, Li S, Cao M, Shen Y, Ma P, Liao R, Qin A, Zhao J, Cao Y
Nat Commun (2024) 15 pp. 7844-7844 [ DOI: doi:10.1038/s41467-024-52321-6 Pubmed: 39245686 ]
- Peptidyl-prolyl cis-trans isomerase b (28 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Synthetic substrate (1 kDa, Protein from Homo sapiens)
- A protein modification complex with synthetic substrate (Complex from Homo sapiens)
- Prolyl 3-hydroxylase 1 (83 kDa, Protein from Homo sapiens)
- Cartilage-associated protein (50 kDa, Protein from Homo sapiens)
- Fe (iii) ion (55 Da, Ligand)
Resolution: 3.75 Å
EM Method: Single-particle
Fitted PDBs: 8kc9
Q-score: 0.399
Li W, Peng J, Yao D, Rao B, Xia Y, Wang Q, Li S, Cao M, Shen Y, Ma P, Liao R, Qin A, Zhao J, Cao Y
Nat Commun (2024) 15 pp. 7844-7844 [ DOI: doi:10.1038/s41467-024-52321-6 Pubmed: 39245686 ]
- Peptidyl-prolyl cis-trans isomerase b (28 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Dsn-mle-mle-mva-bmt-aba-sar-mle-val-mle-ala (1 kDa, Protein from Tolypocladium inflatum)
- A protein modification complex bound with an inhibitor (Complex from Homo sapiens)
- Prolyl 3-hydroxylase 1 (83 kDa, Protein from Homo sapiens)
- Cartilage-associated protein (50 kDa, Protein from Homo sapiens)
- Fe (iii) ion (55 Da, Ligand)
The cryo-EM structure of human ERAD retro-translocation complex
Resolution: 3.67 Å
EM Method: Single-particle
Fitted PDBs: 7y4w
Q-score: 0.367
Rao B, Wang Q, Yao D, Xia Y, Li W, Xie Y, Li S, Cao M, Shen Y, Qin A, Zhao J, Cao Y
Sci Adv (2023) 9 pp. eadi5656-eadi5656 [ Pubmed: 37831771 DOI: doi:10.1126/sciadv.adi5656 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Transitional endoplasmic reticulum atpase (87 kDa, Protein from Homo sapiens)
- Derlin-1 (26 kDa, Protein from Homo sapiens)
- The cryo-em structure of human erad retro-translocation complex (650 kDa, Complex from Homo sapiens)
The cryo-EM structure of human ERAD retro-translocation complex
Resolution: 3.61 Å
EM Method: Single-particle
Fitted PDBs: 7y53
Q-score: 0.366
Rao B, Wang Q, Yao D, Xia Y, Li W, Xie Y, Li S, Cao M, Shen Y, Qin A, Zhao J, Cao Y
Sci Adv (2023) 9 pp. eadi5656-eadi5656 [ Pubmed: 37831771 DOI: doi:10.1126/sciadv.adi5656 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Transitional endoplasmic reticulum atpase (87 kDa, Protein from Homo sapiens)
- Derlin-1 (26 kDa, Protein from Homo sapiens)
- The cryo-em structure of human erad retro-translocation complex (650 kDa, Complex from Homo sapiens)
The cryo-EM structure of human ERAD retro-translocation complex
Resolution: 4.51 Å
EM Method: Single-particle
Fitted PDBs: 7y59
Q-score: 0.22
Rao B, Wang Q, Yao D, Xia Y, Li W, Xie Y, Li S, Cao M, Shen Y, Qin A, Zhao J, Cao Y
Sci Adv (2023) 9 pp. eadi5656-eadi5656 [ Pubmed: 37831771 DOI: doi:10.1126/sciadv.adi5656 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Derlin-1 (30 kDa, Protein from Homo sapiens)
- Transitional endoplasmic reticulum atpase (87 kDa, Protein from Homo sapiens)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- The cryo-em structure of human erad retro-translocation complex (650 kDa, Complex from Homo sapiens)
Cryo-EM structure of the apo CCR3-Gi complex
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7x9y
Q-score: 0.375
Shao Z, Tan Y, Shen Q, Hou L, Yao B, Qin J, Xu P, Mao C, Chen LN, Zhang H, Shen DD, Zhang C, Li W, Du X, Li F, Chen ZH, Jiang Y, Xu HE, Ying S, Ma H, Zhang Y, Shen H
Cell Discov (2022) 8 pp. 44-44 [ Pubmed: 35570218 DOI: doi:10.1038/s41421-022-00403-4 ]
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (37 kDa, Protein from Homo sapiens)
- Cryo-em structure of the apo ccr3-gi complex (Complex from Homo sapiens)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Homo sapiens)
- Scfv16 (26 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Homo sapiens)
- C-c chemokine receptor type 3 (41 kDa, Protein from Homo sapiens)