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* AND natural_source_ncbi_code:"9606" AND author_name:"Li W" AND xref_links:"pfam"
Release date: Jan. 22, 2025
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 9bvk
Q-score: 0.457
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 9bvk
Q-score: 0.457
To Be Published
Sample:
- Coagulation factor ix (7 kDa, Protein from Homo sapiens)
- (4s,7r)-4-hydroxy-n,n,n-trimethyl-9-oxo-7-[(palmitoyloxy)methyl]-3,5,8-trioxa-4-phosphahexacosan-1-aminium 4-oxide (763 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Vitamin k-dependent gamma-carboxylase (85 kDa, Protein from Homo sapiens)
- Vitamin k1 hydroquinone (452 Da, Ligand)
- Vitamin k-dependent gamma-carboxylase with factor ix propeptide and glutamate-rich region and with vitamin k hydroquinone (110 kDa, Complex from Homo sapiens)
Release date: Jan. 22, 2025
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 9bvl
Q-score: 0.506
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 9bvl
Q-score: 0.506
To Be Published
Sample:
- Vitamin k-dependent gamma-carboxylase with factor x propeptide and glutamate-rich region and with vitamin k hydroquinone (110 kDa, Complex from Homo sapiens)
- Factor x light chain (7 kDa, Protein from Homo sapiens)
- (4s,7r)-4-hydroxy-n,n,n-trimethyl-9-oxo-7-[(palmitoyloxy)methyl]-3,5,8-trioxa-4-phosphahexacosan-1-aminium 4-oxide (763 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Vitamin k-dependent gamma-carboxylase (85 kDa, Protein from Homo sapiens)
- Vitamin k1 hydroquinone (452 Da, Ligand)
Release date: Jan. 22, 2025
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 9bvm
Q-score: 0.481
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 9bvm
Q-score: 0.481
To Be Published
Sample:
- Vitamin k-dependent gamma-carboxylase with protein c propeptide and glutamate-rich region and with vitamin k hydroquinone (110 kDa, Complex from Homo sapiens)
- (4s,7r)-4-hydroxy-n,n,n-trimethyl-9-oxo-7-[(palmitoyloxy)methyl]-3,5,8-trioxa-4-phosphahexacosan-1-aminium 4-oxide (763 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Vitamin k-dependent gamma-carboxylase (85 kDa, Protein from Homo sapiens)
- Activation peptide (8 kDa, Protein from Homo sapiens)
- Vitamin k1 hydroquinone (452 Da, Ligand)
Vitamin K-dependent gamma-carboxylase in apo state
Release date: Jan. 22, 2025
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 9bvo
Q-score: 0.313
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 9bvo
Q-score: 0.313
To Be Published
Sample:
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Vitamin k-dependent gamma-carboxylase in unbound state (87 kDa, Complex from Homo sapiens)
- (4s,7r)-4-hydroxy-n,n,n-trimethyl-9-oxo-7-[(palmitoyloxy)methyl]-3,5,8-trioxa-4-phosphahexacosan-1-aminium 4-oxide (763 Da, Ligand)
- Vitamin k-dependent gamma-carboxylase (85 kDa, Protein from Homo sapiens)
Release date: Jan. 22, 2025
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9bvp
Q-score: 0.5
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9bvp
Q-score: 0.5
To Be Published
Sample:
- Vitamin k-dependent gamma-carboxylase with transmembrane gamma-carboxyglutamic acid protein 2 propeptide and glu-rech region and with vitamin k hydroquinone (112 kDa, Complex from Homo sapiens)
- (4s,7r)-4-hydroxy-n,n,n-trimethyl-9-oxo-7-[(palmitoyloxy)methyl]-3,5,8-trioxa-4-phosphahexacosan-1-aminium 4-oxide (763 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Vitamin k-dependent gamma-carboxylase (85 kDa, Protein from Homo sapiens)
- Transmembrane gamma-carboxyglutamic acid protein 2 (13 kDa, Protein from Homo sapiens)
- Vitamin k1 hydroquinone (452 Da, Ligand)
Vitamin K-dependent gamma-carboxylase with TMG2 propeptide and glutamate-rich region
Release date: Jan. 22, 2025
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9bvq
Q-score: 0.499
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9bvq
Q-score: 0.499
To Be Published
Sample:
- Vitamin k-dependent gamma-carboxylase with tmg2 propeptide and glutamate-rich region (112 kDa, Complex from Homo sapiens)
- (4s,7r)-4-hydroxy-n,n,n-trimethyl-9-oxo-7-[(palmitoyloxy)methyl]-3,5,8-trioxa-4-phosphahexacosan-1-aminium 4-oxide (763 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Transmembrane gamma-carboxyglutamic acid protein 2 (13 kDa, Protein from Homo sapiens)
- Vitamin k-dependent gamma-carboxylase (85 kDa, Protein from Homo sapiens)
Release date: Jan. 22, 2025
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 9bvr
Q-score: 0.42
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 9bvr
Q-score: 0.42
To Be Published
Sample:
- Coagulation factor ix (7 kDa, Protein from Homo sapiens)
- Vitamin k-dependent gamma-carboxylase with factor ix propeptide and partially carboxylated glutamate-rich region and with vitamin k hydroquinone and calcium (110 kDa, Complex from Homo sapiens)
- (4s,7r)-4-hydroxy-n,n,n-trimethyl-9-oxo-7-[(palmitoyloxy)methyl]-3,5,8-trioxa-4-phosphahexacosan-1-aminium 4-oxide (763 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Vitamin k-dependent gamma-carboxylase (85 kDa, Protein from Homo sapiens)
- Vitamin k1 hydroquinone (452 Da, Ligand)
Release date: Oct. 9, 2024
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8ucj
Q-score: 0.507
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8ucj
Q-score: 0.507
To Be Published
Sample:
- Cytochrome c oxidase subunit 1 (58 kDa, Protein from Komagataella pastoris)
- Cytochrome c oxidase subunit 3 (30 kDa, Protein from Komagataella pastoris)
- Cytochrome c oxidase subunit 8 (5 kDa, Protein from Komagataella pastoris)
- Cytochrome c oxidase subunit 12 (8 kDa, Protein from Komagataella pastoris)
- Copper (ii) ion (63 Da, Ligand)
- Cytochrome c oxidase subunit 13 (12 kDa, Protein from Komagataella pastoris)
- Dinuclear copper ion (127 Da, Ligand)
- Cytochrome c oxidase subunit 5 (14 kDa, Protein from Komagataella pastoris)
- Komagataella pastoris cytochrome c oxidase (11 subunits) in complex with human vmat2 (246 kDa, Complex from Homo sapiens)
- Heme-a (852 Da, Ligand)
- Cytochrome c oxidase subunit 2 (26 kDa, Protein from Komagataella pastoris)
- Cytochrome c oxidase subunit 4 (16 kDa, Protein from Komagataella pastoris)
- Cytochrome c oxidase subunit 6 (11 kDa, Protein from Komagataella pastoris)
- Synaptic vesicular amine transporter (55 kDa, Protein from Homo sapiens)
- Cytochrome c oxidase subunit 9 (6 kDa, Protein from Komagataella pastoris)
- Zinc ion (65 Da, Ligand)
- 1,2-diacyl-sn-glycero-3-phoshocholine (734 Da, Ligand)
- Phosphatidylethanolamine (734 Da, Ligand)
- Cytochrome c oxidase subunit 7 (6 kDa, Protein from Komagataella pastoris)
Komagataella pastoris Cytochrome c oxidase (9 subunits) in complex with human VMAT2
Release date: Oct. 9, 2024
Resolution: 3.26 Å
EM Method: Single-particle
Fitted PDBs: 8uck
Q-score: 0.486
Resolution: 3.26 Å
EM Method: Single-particle
Fitted PDBs: 8uck
Q-score: 0.486
To Be Published
Sample:
- Cytochrome c oxidase subunit 1 (58 kDa, Protein from Komagataella pastoris)
- Zinc ion (65 Da, Ligand)
- Dinuclear copper ion (127 Da, Ligand)
- Cytochrome c oxidase subunit 8 (5 kDa, Protein from Komagataella pastoris)
- Heme-a (852 Da, Ligand)
- Cytochrome c oxidase subunit 2 (26 kDa, Protein from Komagataella pastoris)
- Phosphatidylethanolamine (734 Da, Ligand)
- Cytochrome c oxidase subunit 7 (6 kDa, Protein from Komagataella pastoris)
- Cytochrome c oxidase subunit 4 (12 kDa, Protein from Komagataella pastoris)
- Komagataella pastoris cytochrome c oxidase (9 subunits) in complex with human vmat2 (225 kDa, Complex from Homo sapiens)
- Synaptic vesicular amine transporter (55 kDa, Protein from Homo sapiens)
- Cytochrome c oxidase subunit 6 (11 kDa, Protein from Komagataella pastoris)
- Cytochrome c oxidase subunit 3 (30 kDa, Protein from Komagataella pastoris)
- Copper (ii) ion (63 Da, Ligand)
- Cytochrome c oxidase subunit 5 (14 kDa, Protein from Komagataella pastoris)
- Cytochrome c oxidase subunit 9 (6 kDa, Protein from Komagataella pastoris)
Komagataella pastoris Cytochrome c oxidase in complex with human VMAT2 and Tetrabenazine
Release date: Oct. 9, 2024
Resolution: 3.18 Å
EM Method: Single-particle
Fitted PDBs: 8ucl
Q-score: 0.511
Resolution: 3.18 Å
EM Method: Single-particle
Fitted PDBs: 8ucl
Q-score: 0.511
To Be Published
Sample:
- Cytochrome c oxidase subunit 1 (58 kDa, Protein from Komagataella pastoris)
- Zinc ion (65 Da, Ligand)
- (3s,5r,11bs)-9,10-dimethoxy-3-(2-methylpropyl)-1,3,4,6,7,11b-hexahydro-2h-pyrido[2,1-a]isoquinolin-2-one (317 Da, Ligand)
- Dinuclear copper ion (127 Da, Ligand)
- Cytochrome c oxidase subunit 8 (5 kDa, Protein from Komagataella pastoris)
- Heme-a (852 Da, Ligand)
- Cytochrome c oxidase subunit 2 (26 kDa, Protein from Komagataella pastoris)
- Phosphatidylethanolamine (734 Da, Ligand)
- Cytochrome c oxidase subunit 7 (6 kDa, Protein from Komagataella pastoris)
- Cytochrome c oxidase subunit 4 (12 kDa, Protein from Komagataella pastoris)
- Cytochrome c oxidase subunit 6 (11 kDa, Protein from Komagataella pastoris)
- Synaptic vesicular amine transporter (55 kDa, Protein from Homo sapiens)
- Cytochrome c oxidase subunit 3 (30 kDa, Protein from Komagataella pastoris)
- Copper (ii) ion (63 Da, Ligand)
- Cytochrome c oxidase subunit 5 (14 kDa, Protein from Komagataella pastoris)
- Cytochrome c oxidase-vmat2-tetrabenazine particle (225 kDa, Complex from Homo sapiens)
- Cytochrome c oxidase subunit 9 (6 kDa, Protein from Komagataella pastoris)