SARS-CoV-2 Omicron Variant SPIKE trimer complexed with ACE2
Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 7wpa
Q-score: 0.371
Yin W, Xu Y, Xu P, Cao X, Wu C, Gu C, He X, Wang X, Huang S, Yuan Q, Wu K, Hu W, Huang Z, Liu J, Wang Z, Jia F, Xia K, Liu P, Wang X, Song B, Zheng J, Jiang H, Cheng X, Jiang Y, Deng SJ, Xu HE
Science (2022) 375 pp. 1048-1053 [ Pubmed: 35133176 DOI: doi:10.1126/science.abn8863 ]
- Sars-cov-2 omicron variant spike (Complex from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (133 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Angiotensin-converting enzyme 2 (92 kDa, Protein from Homo sapiens)
- Sars-cov-2 omicron variant spike trimer complexed with ace2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Ace2 (Complex)
- Chloride ion (35 Da, Ligand)
SARS-CoV-2 Omicron Variant RBD complexed with ACE2
Resolution: 2.79 Å
EM Method: Single-particle
Fitted PDBs: 7wpb
Q-score: 0.599
Yin W, Xu Y, Xu P, Cao X, Wu C, Gu C, He X, Wang X, Huang S, Yuan Q, Wu K, Hu W, Huang Z, Liu J, Wang Z, Jia F, Xia K, Liu P, Wang X, Song B, Zheng J, Jiang H, Cheng X, Jiang Y, Deng SJ, Xu HE
Science (2022) 375 pp. 1048-1053 [ Pubmed: 35133176 DOI: doi:10.1126/science.abn8863 ]
- Zinc ion (65 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (133 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Angiotensin-converting enzyme 2 (92 kDa, Protein from Homo sapiens)
- Sars-cov-2 omicron variant rbd (Complex from Homo sapiens)
- Sars-cov-2 omicron variant rbd complexed with ace2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Ace2 (Complex)
- Chloride ion (35 Da, Ligand)
The second RBD of SARS-CoV-2 Omicron Variant in complexed with RBD-ACE2
Resolution: 2.57 Å
EM Method: Single-particle
Fitted PDBs: 7wpc
Q-score: 0.405
Yin W, Xu Y, Xu P, Cao X, Wu C, Gu C, He X, Wang X, Huang S, Yuan Q, Wu K, Hu W, Huang Z, Liu J, Wang Z, Jia F, Xia K, Liu P, Wang X, Song B, Zheng J, Jiang H, Cheng X, Jiang Y, Deng SJ, Xu HE
Science (2022) 375 pp. 1048-1053 [ Pubmed: 35133176 DOI: doi:10.1126/science.abn8863 ]
- Zinc ion (65 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (133 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Angiotensin-converting enzyme 2 (92 kDa, Protein from Homo sapiens)
- The second rbd of sars-cov-2 omicron variant in complexed with rbd-ace2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 omicron variant rbd (Complex from Homo sapiens)
- Ace2 (Complex)
- Chloride ion (35 Da, Ligand)
Structure of the SARS-CoV-2 A372T spike glycoprotein (open)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7fcd
Q-score: 0.36
Zhang S, Liang Q, He X, Zhao C, Ren W, Yang Z, Wang Z, Ding Q, Deng H, Wang T, Zhang L, Wang X
Cell Res (2022) 32 pp. 315-318 [ DOI: doi:10.1038/s41422-021-00600-y Pubmed: 35017654 ]
- Spike glycoprotein (143 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 a372t spike (Complex from Homo sapiens)
Structure of the SARS-CoV-2 A372T spike glycoprotein (closed)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7fce
Q-score: 0.459
Zhang S, Liang Q, He X, Zhao C, Ren W, Yang Z, Wang Z, Ding Q, Deng H, Wang T, Zhang L, Wang X
Cell Res (2022) 32 pp. 315-318 [ DOI: doi:10.1038/s41422-021-00600-y Pubmed: 35017654 ]
- Spike glycoprotein (143 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 a372t spike (Complex from Homo sapiens)