Cryo-EM structure of BG505 Env mutant A517E in complex with antibody ACS202 Fab
Reveiz M, Xu K, Lee M, Wang S, Olia AS, Harris DR, Liu K, Liu T, Schaub AJ, Stephens T, Wang Y, Zhang B, Huang R, Tsybovsky Y, Kwong PD, Rawi R
Front Immunol (2024) 15 pp. 1484029-1484029 [ DOI: doi:10.3389/fimmu.2024.1484029 Pubmed: 39611147 ]
- Hiv-1 env trimer complexed with antibody fab (Complex from Human immunodeficiency virus 1)
- Envelope glycoprotein gp120 (53 kDa, Protein from Human immunodeficiency virus 1)
- Antibody acs202 fab light chain (23 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Envelope glycoprotein gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- Antibody acs202 fab heavy chain (25 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- Antibody fab (Complex from Homo sapiens)
L5A7 Fab bound to Indonesia2005 Hemagglutinin
Resolution: 3.59 Å
EM Method: Single-particle
Fitted PDBs: 8vue
Q-score: 0.442
Olia AS, Prabhakaran M, Harris DR, Cheung CS, Gillespie RA, Gorman J, Hoover A, Morano NC, Ourahmane A, Srikanth A, Wang S, Wu W, Zhou T, Andrews SF, Kanekiyo M, Shapiro L, McDermott AB, Kwong PD
Front Immunol (2024) 15 pp. 1399960-1399960 [ Pubmed: 38873606 DOI: doi:10.3389/fimmu.2024.1399960 ]
- Hemagglutinin ha1 chain (36 kDa, Protein from Influenza A virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- L5a7 fab light chain (22 kDa, Protein from Homo sapiens)
- L5a7 fab heavy chain (24 kDa, Protein from Homo sapiens)
- Complex of l5a7 fab and indonesia2005 ha (Complex from Homo sapiens)
- Hemagglutinin ha2 chain (19 kDa, Protein from Influenza A virus)
L5A7 Fab bound to 28H6E11 anti-idiotype Fab
Resolution: 3.95 Å
EM Method: Single-particle
Fitted PDBs: 8vuz
Q-score: 0.426
Olia AS, Prabhakaran M, Harris DR, Cheung CS, Gillespie RA, Gorman J, Hoover A, Morano NC, Ourahmane A, Srikanth A, Wang S, Wu W, Zhou T, Andrews SF, Kanekiyo M, Shapiro L, McDermott AB, Kwong PD
Front Immunol (2024) 15 pp. 1399960-1399960 [ Pubmed: 38873606 DOI: doi:10.3389/fimmu.2024.1399960 ]
- L5a7 fab light chain (22 kDa, Protein from Homo sapiens)
- L5a7 fab heavy chain (24 kDa, Protein from Homo sapiens)
- 28h6e11 fab light chain (24 kDa, Protein from Homo sapiens)
- Complex of l5a7 fab and 28h6e11 fab (Complex from Homo sapiens)
- 28h6e11 fab heavy chain (23 kDa, Protein from Homo sapiens)
DH272.2 Fab in Complex with CH848 TF DS SOSIP Env
Finkelstein MT, Parker Miller E, Erdman MC, Fera D
Front Immunol (2022) 13 pp. 962939-962939 [ Pubmed: 36225920 DOI: doi:10.3389/fimmu.2022.962939 ]
C-reactive protein decamer at pH 7.5
Noone DP, van der Velden TT, Sharp TH
Front Immunol (2021) 12 pp. 757633-757633 [ DOI: doi:10.3389/fimmu.2021.757633 Pubmed: 34975846 ]
- C-reactive protein decamer (230 kDa, Complex from Homo sapiens)
- C-reactive protein (Protein from Homo sapiens)
C-reactive protein pentamer at pH 7.5
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7pkb
Q-score: 0.586
Noone DP, van der Velden TT, Sharp TH
Front Immunol (2021) 12 pp. 757633-757633 [ DOI: doi:10.3389/fimmu.2021.757633 Pubmed: 34975846 ]
- C-reactive protein (23 kDa, Protein from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- Water (18 Da, Ligand)
- C-reactive protein pentamer (115 kDa, Complex from Homo sapiens)
C-reactive protein decamer at pH 7.5 with phosphocholine ligand
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7pkd
Q-score: 0.568
Noone DP, van der Velden TT, Sharp TH
Front Immunol (2021) 12 pp. 757633-757633 [ DOI: doi:10.3389/fimmu.2021.757633 Pubmed: 34975846 ]
- Calcium ion (40 Da, Ligand)
- C-reactive protein (23 kDa, Protein from Homo sapiens)
- Phosphocholine (184 Da, Ligand)
- C-reactive protein decamer with phosphocholine ligand (230 kDa, Complex from Homo sapiens)
- Water (18 Da, Ligand)
C-reactive protein pentamer at pH 7.5 with phosphocholine ligand
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7pke
Q-score: 0.569
Noone DP, van der Velden TT, Sharp TH
Front Immunol (2021) 12 pp. 757633-757633 [ DOI: doi:10.3389/fimmu.2021.757633 Pubmed: 34975846 ]
- Calcium ion (40 Da, Ligand)
- C-reactive protein pentamer (115 kDa, Complex from Homo sapiens)
- C-reactive protein (23 kDa, Protein from Homo sapiens)
- Phosphocholine (184 Da, Ligand)
- Water (18 Da, Ligand)
C-reactive protein decamer at pH 5
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7pkf
Q-score: 0.618
Noone DP, van der Velden TT, Sharp TH
Front Immunol (2021) 12 pp. 757633-757633 [ DOI: doi:10.3389/fimmu.2021.757633 Pubmed: 34975846 ]
- C-reactive protein decamer (230 kDa, Complex from Homo sapiens)
- C-reactive protein (23 kDa, Protein from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- Water (18 Da, Ligand)
C-reactive protein pentamer at pH 5
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7pkg
Q-score: 0.553
Noone DP, van der Velden TT, Sharp TH
Front Immunol (2021) 12 pp. 757633-757633 [ DOI: doi:10.3389/fimmu.2021.757633 Pubmed: 34975846 ]
- C-reactive protein (23 kDa, Protein from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- Water (18 Da, Ligand)
- C-reactive protein pentamer (115 kDa, Complex from Homo sapiens)