Cryo-EM structure of BG505 Env mutant A517E in complex with antibody ACS202 Fab
Reveiz M, Xu K, Lee M, Wang S, Olia AS, Harris DR, Liu K, Liu T, Schaub AJ, Stephens T, Wang Y, Zhang B, Huang R, Tsybovsky Y, Kwong PD, Rawi R
Front Immunol (2024) 15 pp. 1484029-1484029 [ DOI: doi:10.3389/fimmu.2024.1484029 Pubmed: 39611147 ]
- Hiv-1 env trimer complexed with antibody fab (Complex from Human immunodeficiency virus 1)
- Envelope glycoprotein gp120 (53 kDa, Protein from Human immunodeficiency virus 1)
- Antibody acs202 fab light chain (23 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Envelope glycoprotein gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- Antibody acs202 fab heavy chain (25 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- Antibody fab (Complex from Homo sapiens)
C-reactive protein pentamer at pH 7.5
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7pkb
Q-score: 0.586
Noone DP, van der Velden TT, Sharp TH
Front Immunol (2021) 12 pp. 757633-757633 [ DOI: doi:10.3389/fimmu.2021.757633 Pubmed: 34975846 ]
- C-reactive protein (23 kDa, Protein from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- Water (18 Da, Ligand)
- C-reactive protein pentamer (115 kDa, Complex from Homo sapiens)
C-reactive protein decamer at pH 7.5 with phosphocholine ligand
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7pkd
Q-score: 0.568
Noone DP, van der Velden TT, Sharp TH
Front Immunol (2021) 12 pp. 757633-757633 [ DOI: doi:10.3389/fimmu.2021.757633 Pubmed: 34975846 ]
- Calcium ion (40 Da, Ligand)
- C-reactive protein (23 kDa, Protein from Homo sapiens)
- Phosphocholine (184 Da, Ligand)
- C-reactive protein decamer with phosphocholine ligand (230 kDa, Complex from Homo sapiens)
- Water (18 Da, Ligand)
C-reactive protein pentamer at pH 7.5 with phosphocholine ligand
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7pke
Q-score: 0.569
Noone DP, van der Velden TT, Sharp TH
Front Immunol (2021) 12 pp. 757633-757633 [ DOI: doi:10.3389/fimmu.2021.757633 Pubmed: 34975846 ]
- Calcium ion (40 Da, Ligand)
- C-reactive protein pentamer (115 kDa, Complex from Homo sapiens)
- C-reactive protein (23 kDa, Protein from Homo sapiens)
- Phosphocholine (184 Da, Ligand)
- Water (18 Da, Ligand)
C-reactive protein decamer at pH 5
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7pkf
Q-score: 0.618
Noone DP, van der Velden TT, Sharp TH
Front Immunol (2021) 12 pp. 757633-757633 [ DOI: doi:10.3389/fimmu.2021.757633 Pubmed: 34975846 ]
- C-reactive protein decamer (230 kDa, Complex from Homo sapiens)
- C-reactive protein (23 kDa, Protein from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- Water (18 Da, Ligand)
C-reactive protein pentamer at pH 5
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7pkg
Q-score: 0.553
Noone DP, van der Velden TT, Sharp TH
Front Immunol (2021) 12 pp. 757633-757633 [ DOI: doi:10.3389/fimmu.2021.757633 Pubmed: 34975846 ]
- C-reactive protein (23 kDa, Protein from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- Water (18 Da, Ligand)
- C-reactive protein pentamer (115 kDa, Complex from Homo sapiens)
C-reactive protein decamer at pH 5 with phosphocholine ligand
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7pkh
Q-score: 0.601
Noone DP, van der Velden TT, Sharp TH
Front Immunol (2021) 12 pp. 757633-757633 [ DOI: doi:10.3389/fimmu.2021.757633 Pubmed: 34975846 ]
- Calcium ion (40 Da, Ligand)
- C-reactive protein (23 kDa, Protein from Homo sapiens)
- Phosphocholine (184 Da, Ligand)
- C-reactive protein decamer with phosphocholine ligand (230 kDa, Complex from Homo sapiens)
- Water (18 Da, Ligand)
S protein of SARS-CoV-2 in complex bound with P36-5D2(state2)
Resolution: 3.65 Å
EM Method: Single-particle
Fitted PDBs: 7fae
Q-score: 0.292
Shan S, Mok CK, Zhang S, Lan J, Li J, Yang Z, Wang R, Cheng L, Fang M, Aw ZQ, Yu J, Zhang Q, Shi X, Zhang T, Zhang Z, Wang J, Wang X, Chu JJH, Zhang L
Front Immunol (2021) 12 pp. 766821-766821 [ DOI: doi:10.3389/fimmu.2021.766821 Pubmed: 34966387 ]
- S protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- P36-5d2 light chain (25 kDa, Protein from Homo sapiens)
- P36-5d2 antibody fab (Complex)
- P36-5d2 heavy chain (51 kDa, Protein from Homo sapiens)
- S protein of sars-cov-2 in complex bound with p36-5d2 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (143 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
S protein of SARS-CoV-2 in complex bound with P36-5D2 (state1)
Resolution: 3.69 Å
EM Method: Single-particle
Fitted PDBs: 7faf
Q-score: 0.258
Shan S, Mok CK, Zhang S, Lan J, Li J, Yang Z, Wang R, Cheng L, Fang M, Aw ZQ, Yu J, Zhang Q, Shi X, Zhang T, Zhang Z, Wang J, Wang X, Chu JJH, Zhang L
Front Immunol (2021) 12 pp. 766821-766821 [ DOI: doi:10.3389/fimmu.2021.766821 Pubmed: 34966387 ]
- S protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- P36-5d2 light chain (25 kDa, Protein from Homo sapiens)
- P36-5d2 fab (Complex)
- P36-5d2 heavy chain (51 kDa, Protein from Homo sapiens)
- S protein of sars-cov-2 in complex bound with p36-5d2 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (143 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Cryo-EM structure of SRR2899884.46167H+MEDI8852L fab in complex with Victoria HA
Resolution: 3.41 Å
EM Method: Single-particle
Fitted PDBs: 7kc1
Q-score: 0.461
Chuang GY, Shen CH, Cheung CS, Gorman J, Creanga A, Joyce MG, Leung K, Rawi R, Wang L, Yang ES, Yang Y, Zhang B, Zhang Y, Kanekiyo M, Zhou T, DeKosky BJ, Graham BS, Mascola JR, Kwong PD
Front Immunol (2021) 12 pp. 662909-662909 [ DOI: doi:10.3389/fimmu.2021.662909 Pubmed: 34135892 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Fab light chain (22 kDa, Protein from Homo sapiens)
- Hemagglutinin (38 kDa, Protein from Influenza A virus)
- Fab heavy chain (24 kDa, Protein from Homo sapiens)
- Fusion protein of hemagglutinin and envelope glycoprotein (25 kDa, Protein from Human immunodeficiency virus 1)
- Cryo-em structure of srr2899884.46167h+medi8852l fab in complex with victoria ha (Complex from Influenza A virus)
- Cryo-em structure of srr2899884.46167h+medi8852l fab in complex with victoria ha (Complex)