In situ cryo-electron tomogram of an autophagosome in the projection of an iPSC-derived neuron #2
Hoyer MJ, Capitanio C, Smith IR, Paoli JC, Bieber A, Jiang Y, Paulo JA, Gonzalez-Lozano MA, Baumeister W, Wilfling F, Schulman BA, Harper JW
Nat Cell Biol (2024) 26 pp. 378-392 [ Pubmed: 38429475 DOI: doi:10.1038/s41556-024-01356-4 ]
In situ cryo-electron tomogram of an autophagosome in the projection of an iPSC-derived neuron #1
Hoyer MJ, Capitanio C, Smith IR, Paoli JC, Bieber A, Jiang Y, Paulo JA, Gonzalez-Lozano MA, Baumeister W, Wilfling F, Schulman BA, Harper JW
Nat Cell Biol (2024) 26 pp. 378-392 [ Pubmed: 38429475 DOI: doi:10.1038/s41556-024-01356-4 ]
Complex of AMPPNP-Kif7 and Gli2 Zinc-Finger domain bound to microtubules
Resolution: 3.89 Å
EM Method: Helical reconstruction
Fitted PDBs: 7rx0
Q-score: 0.338
Haque F, Freniere C, Ye Q, Mani N, Wilson-Kubalek EM, Ku PI, Milligan RA, Subramanian R
Nat Cell Biol (2022) 24 pp. 1088-1098 [ DOI: doi:10.1038/s41556-022-00935-7 Pubmed: 35725768 ]
- Microtubule-bound complex of kif7 and gli2 zinc finger domain (Complex)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- Kinesin kif7 (Complex from Homo sapiens)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Tubulin alpha-1a chain (50 kDa, Protein from Sus scrofa)
- Kinesin-like protein kif7 (59 kDa, Protein from Homo sapiens)
- Tubulin beta chain (49 kDa, Protein from Sus scrofa)
- Magnesium ion (24 Da, Ligand)
- Zinc finger protein gli2 (7 kDa, Protein from Homo sapiens)
- Zinc-finger protein gli2 (Complex from Homo sapiens)
- Microtubules (Complex from Sus scrofa)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
Resolution: 6.1 Å
EM Method: Single-particle
Fitted PDBs: 7pfp
Q-score: 0.182
Stsiapanava A, Xu C, Nishio S, Han L, Yamakawa N, Carroni M, Tunyasuvunakool K, Jumper J, de Sanctis D, Wu B, Jovine L
Nat Struct Mol Biol (2022) 29 pp. 190-193 [ Pubmed: 35273390 DOI: doi:10.1038/s41594-022-00729-3 ]
- Uromodulin (umod)/tamm-horsfall protein (thp) (Complex from Homo sapiens)
- Uromodulin (69 kDa, Protein from Homo sapiens)
14pf microtubule decorated with EML1-GFP
Jijumon AS, Bodakuntla S, Genova M, Bangera M, Sackett V, Besse L, Maksut F, Henriot V, Magiera MM, Sirajuddin M, Janke C
Nat Cell Biol (2022) 24 pp. 253-267 [ DOI: doi:10.1038/s41556-021-00825-4 Pubmed: 35102268 ]
Cryo-EM structure of the Lin28B nucleosome core particle
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7nl0
Q-score: 0.519
Roberts GA, Ozkan B, Gachulincova I, O'Dwyer MR, Hall-Ponsele E, Saxena M, Robinson PJ, Soufi A
Nat Cell Biol (2021) 23 pp. 834-845 [ Pubmed: 34354236 DOI: doi:10.1038/s41556-021-00727-5 ]
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h3.1 (Complex from Homo sapiens)
- Histone h2a type 1-b/e (Complex from Homo sapiens)
- Histone h4 (Complex from Homo sapiens)
- Histone h2a type 1-b/e (14 kDa, Protein from Homo sapiens)
- Histone h2b type 1-j (13 kDa, Protein from Homo sapiens)
- Histone h2b type 1-j (Complex from Homo sapiens)
- Dna (131-mer) (50 kDa, DNA from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Dna (Complex from Homo sapiens)
- Lin28b nucleosome core particle (209 kDa, Complex)
- Dna (131-mer) (49 kDa, DNA from Homo sapiens)
Cryo-EM of native human uromodulin (UMOD)/Tamm-Horsfall protein (THP) filament
Resolution: 3.35 Å
EM Method: Helical reconstruction
Fitted PDBs: 6tqk
Q-score: 0.391
Stsiapanava A, Xu C, Brunati M, Zamora-Caballero S, Schaeffer C, Bokhove M, Han L, Hebert H, Carroni M, Yasumasu S, Rampoldi L, Wu B, Jovine L
EMBO J (2020) 39 pp. e106807-e106807 [ DOI: doi:10.15252/embj.2020106807 Pubmed: 33196145 ]
- Uromodulin (61 kDa, Protein from Homo sapiens)
- Uromodulin (umod)/tamm-horsfall protein (thp) (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Cryo-EM of elastase-treated human uromodulin (UMOD)/Tamm-Horsfall protein (THP) filament
Resolution: 3.96 Å
EM Method: Helical reconstruction
Fitted PDBs: 6tql
Q-score: 0.289
Stsiapanava A, Xu C, Brunati M, Zamora-Caballero S, Schaeffer C, Bokhove M, Han L, Hebert H, Carroni M, Yasumasu S, Rampoldi L, Wu B, Jovine L
EMBO J (2020) 39 pp. e106807-e106807 [ DOI: doi:10.15252/embj.2020106807 Pubmed: 33196145 ]
- Uromodulin (umod)/tamm-horsfall protein (thp) (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Uromodulin (33 kDa, Protein from Homo sapiens)
Guesdon A, Bazile F, Buey RM, Mohan R, Monier S, Angevin M, Heichette C, Tampe R, Duchesne L, Akhmanova A, Steinmetz MO, Chretien D
Nat Cell Biol (2016) 18 pp. 1102-1108 [ Pubmed: 27617931 DOI: doi:10.1038/ncb3412 ]
- Eb1 conjugated to 6.5 nm gold nanoparticles, in interaction with a microtubule growing end (Sample)
- Tubulin beta chain (498 kDa, Protein from Sus scrofa)
- Tubulin alpha chain (500 kDa, Protein from Sus scrofa)
- End-binding protein one (30 kDa, Protein from Homo sapiens)
Guesdon A, Bazile F, Buey RM, Mohan R, Monier S, Angevin M, Heichette C, Tampe R, Duchesne L, Akhmanova A, Steinmetz MO, Chretien D
Nat Cell Biol (2016) 18 pp. 1102-1108 [ Pubmed: 27617931 DOI: doi:10.1038/ncb3412 ]
- Tubulin beta chain (498 kDa, Protein from Sus scrofa)
- Tubulin alpha chain (500 kDa, Protein from Sus scrofa)
- End-binding protein one (30 kDa, Protein from Homo sapiens)
- Eb1 conjugated to 9.8 nm gold nanoparticles, in interaction with a microtubule growing end (Sample)