Resolution: 26.8 Å
EM Method: Subtomogram averaging
Fitted PDBs: 8r1a
Q-score: 0.03
Weismehl M, Chu X, Kutsch M, Lauterjung P, Herrmann C, Kudryashev M, Daumke O
EMBO J (2024) 43 pp. 615-636 [ DOI: doi:10.1038/s44318-023-00023-y Pubmed: 38267655 ]
- Aluminum fluoride (83 Da, Ligand)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Membrane-bound oligomer of human guanylate-binding protein 1 (gbp1) (Complex from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Guanylate binding protein 1 (69 kDa, Protein from Homo sapiens)
Composite structure of dynein-dynactin-BICDR on microtubules
Resolution: 20.0 Å
EM Method: Single-particle
Fitted PDBs: 7z8f
Q-score: 0.215
Nature (2022) 610 pp. 212-216 [ Pubmed: 36071160 DOI: doi:10.1038/s41586-022-05186-y ]
- Bicdr1 (130 kDa, Cellular component from Mus musculus)
- Complex of dynein, dynactin, and bicdr1 bound to microtubules (4 MDa, Complex)
- Bicd family-like cargo adapter 1 (65 kDa, Protein from Mus musculus)
- Arp1 actin related protein 1 homolog a (42 kDa, Protein from Sus scrofa)
- Dynactin (1 MDa, Cellular component from Sus scrofa)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- F-actin capping protein beta subunit (30 kDa, Protein from Sus scrofa)
- Dynactin subunit 1 (142 kDa, Protein from Sus scrofa)
- Dynactin subunit 2 (44 kDa, Protein from Sus scrofa)
- Dynactin 6 (20 kDa, Protein from Sus scrofa)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Dynein light chain roadblock-type 1 (10 kDa, Protein from Homo sapiens)
- Cytoplasmic dynein 1 heavy chain 1 (533 kDa, Protein from Homo sapiens)
- Dynactin subunit 3 (21 kDa, Protein from Sus scrofa)
- Cytoplasmic dynein 1 light intermediate chain 2 (54 kDa, Protein from Homo sapiens)
- Actin, cytoplasmic 1 (41 kDa, Protein from Sus scrofa)
- Arp11 (46 kDa, Protein from Sus scrofa)
- Dynactin subunit 4 (52 kDa, Protein from Sus scrofa)
- Cytoplasmic dynein 1 intermediate chain 2 (71 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Dynactin subunit 5 (20 kDa, Protein from Sus scrofa)
- Zinc ion (65 Da, Ligand)
- Dynein, cytoplasmic 1 (1 MDa, Cellular component from Homo sapiens)
- Capping protein (actin filament) muscle z-line, alpha 1 (33 kDa, Protein from Sus scrofa)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
Sub-tomogram averaging of erythrocyte ankyrin-1 complex
Resolution: 25.0 Å
EM Method: Subtomogram averaging
Fitted PDBs: 8csl
Q-score: 0.046
Vallese F, Kim K, Yen LY, Johnston JD, Noble AJ, Cali T, Clarke OB
Nat Struct Mol Biol (2022) 29 pp. 706-718 [ DOI: doi:10.1038/s41594-022-00792-w Pubmed: 35835865 ]
- Band 3 anion transport protein (101 kDa, Protein from Homo sapiens)
- Ankyrin-1 (206 kDa, Protein from Homo sapiens)
- Glycophorin-a (16 kDa, Protein from Homo sapiens)
- Protein 4.2 (77 kDa, Protein from Homo sapiens)
- Blood group rh(ce) polypeptide (45 kDa, Protein from Homo sapiens)
- Ammonium transporter rh type a (44 kDa, Protein from Homo sapiens)
- Glycophorin-b (9 kDa, Protein from Homo sapiens)
- Sub-tomogram average of ankyrin-1 complexes from native erythrocyte vesicles (Complex from Homo sapiens)
Resolution: 21.0 Å
EM Method: Single-particle
Fitted PDBs: 7t62
Q-score: 0.055
Li N, Torres MB, Spetz MR, Wang R, Peng L, Tian M, Dower CM, Nguyen R, Sun M, Tai CH, de Val N, Cachau R, Wu X, Hewitt SM, Kaplan RN, Khan J, St Croix B, Thiele CJ, Ho M
Cell Rep Med (2021) 2 pp. 100297-100297 [ DOI: doi:10.1016/j.xcrm.2021.100297 Pubmed: 34195677 ]
- Ct3 (47 kDa, Protein from Mus musculus)
- Gpc2 het ct3 complex (Complex)
- Glypican-2 (61 kDa, Protein from Homo sapiens)
Resolution: 26.0 Å
EM Method: Subtomogram averaging
Fitted PDBs: 7a7d
Q-score: 0.019
Sikora M, Ermel UH, Seybold A, Kunz M, Calloni G, Reitz J, Vabulas RM, Hummer G, Frangakis AS
PNAS (2020) 117 pp. 27132-27140 [ Pubmed: 33067392 DOI: doi:10.1073/pnas.2004563117 ]
- Desmocollin-2 (60 kDa, Protein from Homo sapiens)
- Desmosome from mouse liver (Cellular component from Homo sapiens)
- Desmoglein-2 (61 kDa, Protein from Homo sapiens)
SAGA-TBP filtered to show the position of the DUB domain
Resolution: 20.0 Å
EM Method: Single-particle
Fitted PDBs: 6tbm
Q-score: 0.08
Papai G, Frechard A, Kolesnikova O, Crucifix C, Schultz P, Ben-Shem A
Nature (2020) 577 pp. 711-716 [ Pubmed: 31969704 DOI: doi:10.1038/s41586-020-1944-2 ]
- Saga complex (Complex from Komagataella phaffii GS115)
- Spt20 (59 kDa, Protein from Komagataella phaffii (strain GS115 / ATCC 20864))
- Subunit (17 kda) of tfiid and saga complexes, involved in rna polymerase ii transcription initiation (17 kDa, Protein from Komagataella phaffii (strain GS115 / ATCC 20864))
- Spt8 (34 kDa, Protein from Komagataella phaffii GS115)
- Subunit (61/68 kda) of tfiid and saga complexes (66 kDa, Protein from Komagataella phaffii (strain GS115 / ATCC 20864))
- Subunit of the saga transcriptional regulatory complex, involved in proper assembly of the complex (136 kDa, Protein from Komagataella phaffii (strain GS115 / ATCC 20864))
- Transcription and mrna export factor sus1 (11 kDa, Protein from Komagataella phaffii (strain GS115 / ATCC 20864))
- Transcription initiation factor tfiid subunit 10 (23 kDa, Protein from Komagataella phaffii (strain GS115 / ATCC 20864))
- Subunit (90 kda) of tfiid and saga complexes (80 kDa, Protein from Komagataella phaffii (strain GS115 / ATCC 20864))
- Subunit (60 kda) of tfiid and saga complexes (54 kDa, Protein from Komagataella phaffii (strain GS115 / ATCC 20864))
- Subunit of the saga and saga-like transcriptional regulatory complexes, interacts with spt15p to act (39 kDa, Protein from Komagataella phaffii (strain GS115 / ATCC 20864))
- Polyubiquitin-b (8 kDa, Protein from Homo sapiens)
- Saga component (Complex from Komagataella phaffii GS115)
- Water (18 Da, Ligand)
- Transcription-associated protein (438 kDa, Protein from Komagataella phaffii (strain GS115 / ATCC 20864))
- Subunit of saga histone acetyltransferase complex (79 kDa, Protein from Komagataella phaffii (strain GS115 / ATCC 20864))
- Transcriptional regulator involved in glucose repression of gal4p-regulated genes (81 kDa, Protein from Komagataella phaffii (strain GS115 / ATCC 20864))
- Tata-box binding protein (tbp) (27 kDa, Protein from Komagataella phaffii (strain GS115 / ATCC 20864))
- Tata-box binding protein (tbp) (Complex from Komagataella phaffii GS115)
- Saga-associated factor 11 (13 kDa, Protein from Komagataella phaffii (strain GS115 / ATCC 20864))
- Transcriptional coactivator hfi1/ada1 (49 kDa, Protein from Komagataella phaffii (strain GS115 / ATCC 20864))
- Ubiquitin carboxyl-terminal hydrolase (56 kDa, Protein from Komagataella phaffii (strain GS115 / ATCC 20864))
- Saga bound to tbp (1 MDa, Complex)
- Polyubiquitin-b (Complex from Homo sapiens)
Resolution: 20.0 Å
EM Method: Single-particle
Fitted PDBs: 6v92
Q-score: 0.053
Patel AB, Moore CM, Greber BJ, Luo J, Zukin SA, Ranish J, Nogales E
eLife (2019) 8 [ Pubmed: 31886770 DOI: doi:10.7554/eLife.54449 ]
- Chromatin structure-remodeling complex subunit rsc2 (102 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Unknown protein (1 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Chromatin structure-remodeling complex protein rsc14 (19 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Chromatin structure-remodeling complex protein rsc8 (63 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Unknown protein (1 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Uuknown protein (1 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Chromatin structure-remodeling complex subunit rsc7 (49 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Chromatin structure-remodeling complex subunit rsc9 (65 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone h2b type 1-k (13 kDa, Protein from Homo sapiens)
- Chromatin structure-remodeling complex subunit rsc4 (72 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Nuclear protein sth1/nps1 (156 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- High temperature lethal protein 1 (9 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone h2a type 1-b/e (14 kDa, Protein from Homo sapiens)
- Rsc-ncp complex (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Chromatin structure-remodeling complex protein rsc3 (101 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Chromatin structure-remodeling complex protein rsc58 (57 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Chromatin structure-remodeling complex subunit sfh1 (48 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Unknown protein (2 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Chromatin structure-remodeling complex protein rsc6 (54 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Zinc ion (65 Da, Ligand)
- Actin-related protein 7 (53 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Actin-like protein arp9 (53 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Chromatin structure-remodeling complex protein rsc30 (101 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna (146-mer) (45 kDa, DNA from synthetic construct)
- Unknown protein (4 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Regulator of ty1 transposition protein 102 (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
The asymmetric-reconstructed cryo-EM structure of Zika virus-FabZK2B10 complex
Resolution: 20.0 Å
EM Method: Single-particle
Fitted PDBs: 6jfh
Q-score: 0.045
Wang L, Wang R, Wang L, Ben H, Yu L, Gao F, Shi X, Yin C, Zhang F, Xiang Y, Zhang L
Cell Rep (2019) 26 pp. 3360-3368.e5 [ DOI: doi:10.1016/j.celrep.2019.02.062 Pubmed: 30893607 ]
- Fabzk2b10 light chain (22 kDa, Protein from Homo sapiens)
- Strutural protein m (8 kDa, Protein from Zika virus)
- Zikv complexed with fabzk2b10 (Complex from Zika virus)
- Zikv structural e protein (54 kDa, Protein from Zika virus)
- Fabzk2b10 heavy chain (25 kDa, Protein from Homo sapiens)
Resolution: 25.0 Å
EM Method: Single-particle
Fitted PDBs: 6idk
Q-score: 0.018
Wirawan M, Fibriansah G, Marzinek JK, Lim XX, Ng TS, Sim AYL, Zhang Q, Kostyuchenko VA, Shi J, Smith SA, Verma CS, Anand G, Crowe Jr JE, Bond PJ, Lok SM
Structure (2019) 27 pp. 253-267.e8 [ Pubmed: 30471923 DOI: doi:10.1016/j.str.2018.10.009 ]
- Dengue virus 3 in complex with human antibody (Complex)
- Fab 1h10 heavy chain (v-region) (15 kDa, Protein from Homo sapiens)
- Fab 1h10 light chain (v-region) (12 kDa, Protein from Homo sapiens)
- Envelope protein (53 kDa, Protein from Dengue virus 3)
- Premembrane protein (18 kDa, Protein from Dengue virus 3)
- Dengue virus 3 (Virus from Dengue virus 3)
- Fab 1h10 (Complex from Homo sapiens)
Resolution: 25.0 Å
EM Method: Single-particle
Fitted PDBs: 6idl
Q-score: 0.015
Wirawan M, Fibriansah G, Marzinek JK, Lim XX, Ng TS, Sim AYL, Zhang Q, Kostyuchenko VA, Shi J, Smith SA, Verma CS, Anand G, Crowe Jr JE, Bond PJ, Lok SM
Structure (2019) 27 pp. 253-267.e8 [ Pubmed: 30471923 DOI: doi:10.1016/j.str.2018.10.009 ]
- Fab 1h10 heavy chain (v-region) (15 kDa, Protein from Homo sapiens)
- Fab 1h10 light chain (v-region) (12 kDa, Protein from Homo sapiens)
- Envelope protein (53 kDa, Protein from Dengue virus 3)
- Dengue virus 3 in complex with human antibodies (Complex)
- Fab of antibody 1h10 (Complex from Homo sapiens)
- Premembrane protein (18 kDa, Protein from Dengue virus 3)
- Dengue virus 3 (Virus from Dengue virus 3)