HPV6 L1 pentamer in complex with Fab F5-77
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 8yef
Q-score: 0.337
To Be Published
- Hpv6 l1 pentamer in complex with fab f5-77 (Complex)
- Hpv6 l1 pentamer (Complex from Alphapapillomavirus 10)
- Heavy chain of f5-77 (13 kDa, Protein from Homo sapiens)
- Light chain of f5-77 (11 kDa, Protein from Homo sapiens)
- Fabf5-77 (Complex from Homo sapiens)
- Major capsid protein l1 (49 kDa, Protein from Alphapapillomavirus 10)
Cryo-EM structure of BAF-Lamin A/C IgF-H1-nucleosome complex
Resolution: 4.05 Å
EM Method: Single-particle
Fitted PDBs: 9j8o
Q-score: 0.292
Horikoshi N, Miyake R, Sogawa-Fujiwara C, Ogasawara M, Takizawa Y, Kurumizaka H
Nat Commun (2025) 16 pp. 1495-1495 [ Pubmed: 39929866 DOI: doi:10.1038/s41467-025-56823-9 ]
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Dna (193-mer) (59 kDa, DNA from synthetic construct)
- Histone h1.1 (22 kDa, Protein from Homo sapiens)
- Dna (193-mer) (59 kDa, DNA from synthetic construct)
- Barrier-to-autointegration factor (10 kDa, Protein from Homo sapiens)
- Lamin-a/c (17 kDa, Protein from Homo sapiens)
- Complex containing baf, lamin a/c igf, h1, and nucleosome (580 kDa, Complex from Homo sapiens)
- Histone h2b type 1-j (14 kDa, Protein from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Histone h2a type 1-b/e (14 kDa, Protein from Homo sapiens)
Structure of LAT1-CD98hc in complex with L-Phe, focused on TMD
Resolution: 4.12 Å
EM Method: Single-particle
Fitted PDBs: 8kdn
Q-score: 0.413
Lee Y, Jin C, Ohgaki R, Xu M, Ogasawara S, Warshamanage R, Yamashita K, Murshudov G, Nureki O, Murata T, Kanai Y
Nat Commun (2025) 16 pp. 1635-1635 [ DOI: doi:10.1038/s41467-025-56903-w Pubmed: 39952931 ]
- Phenylalanine (165 Da, Ligand)
- Lat1-cd98hc-fab170 (173 kDa, Complex from Homo sapiens)
- 4f2 cell-surface antigen heavy chain (68 kDa, Protein from Homo sapiens)
- Large neutral amino acids transporter small subunit 1 (56 kDa, Protein from Homo sapiens)
Structure of LAT1-CD98hc in complex with melphalan, focused on TMD
Resolution: 4.12 Å
EM Method: Single-particle
Fitted PDBs: 8kdo
Q-score: 0.417
Lee Y, Jin C, Ohgaki R, Xu M, Ogasawara S, Warshamanage R, Yamashita K, Murshudov G, Nureki O, Murata T, Kanai Y
Nat Commun (2025) 16 pp. 1635-1635 [ DOI: doi:10.1038/s41467-025-56903-w Pubmed: 39952931 ]
- (2~{s})-2-azanyl-3-[4-[bis(2-chloroethyl)amino]phenyl]propanoic acid (305 Da, Ligand)
- Lat1-cd98hc-fab170 (173 kDa, Complex from Homo sapiens)
- 4f2 cell-surface antigen heavy chain (68 kDa, Protein from Homo sapiens)
- Large neutral amino acids transporter small subunit 1 (56 kDa, Protein from Homo sapiens)
Structure of apo outward-open LAT1-CD98h in nanodisc, focused on TMD
Resolution: 4.12 Å
EM Method: Single-particle
Fitted PDBs: 8kdp
Q-score: 0.409
Lee Y, Jin C, Ohgaki R, Xu M, Ogasawara S, Warshamanage R, Yamashita K, Murshudov G, Nureki O, Murata T, Kanai Y
Nat Commun (2025) 16 pp. 1635-1635 [ DOI: doi:10.1038/s41467-025-56903-w Pubmed: 39952931 ]
- Lat1-cd98hc-fab170 (173 kDa, Complex from Homo sapiens)
- 4f2 cell-surface antigen heavy chain (68 kDa, Protein from Homo sapiens)
- Large neutral amino acids transporter small subunit 1 (56 kDa, Protein from Homo sapiens)
Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3 (state Deg1)
Huang Z, Diehl FF, Wang M, Li Y, Song A, Chen FX, Rosa-Mercado NA, Beckmann R, Green R, Cheng J
Mol Cell (2025) [ Pubmed: 39947183 DOI: doi:10.1016/j.molcel.2025.01.013 ]
Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3 (state Deg3)
Huang Z, Diehl FF, Wang M, Li Y, Song A, Chen FX, Rosa-Mercado NA, Beckmann R, Green R, Cheng J
Mol Cell (2025) [ Pubmed: 39947183 DOI: doi:10.1016/j.molcel.2025.01.013 ]
Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3 (state Deg4)
Huang Z, Diehl FF, Wang M, Li Y, Song A, Chen FX, Rosa-Mercado NA, Beckmann R, Green R, Cheng J
Mol Cell (2025) [ Pubmed: 39947183 DOI: doi:10.1016/j.molcel.2025.01.013 ]
Cryo-EM structure of the C1q A, B-crt, C peptide full assembly
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 9c9u
Q-score: 0.265
Kreutzberger MAB, Yu LT, Bui TH, Hancu MC, Purdy MD, Osinski T, Kasson PM, Egelman EH, Hartgerink JD
ACS Cent Sci (2025) [ DOI: doi:10.1021/acscentsci.5c00018 ]
- Complement c1q subcomponent subunit a (3 kDa, Protein from Homo sapiens)
- Complement c1q subcomponent subunit c (3 kDa, Protein from Homo sapiens)
- Complement c1q subcomponent subunit b (4 kDa, Protein from Homo sapiens)
- The c1q a, b-crt, c peptide assembly (Complex from Homo sapiens)