Bangaru S, Jackson AM, Copps J, Fernandez-Quintero ML, Torres JL, Richey ST, Nogal B, Sewall LM, de la Pena AT, Rehman A, Guebre-Xabier M, Girard B, Das R, Corbett-Helaire KS, Seder RA, Graham BS, Edwards DK, Patel N, Smith G, Ward AB
bioRxiv (2024) [ DOI: doi:10.1101/2024.12.11.628030 Pubmed: 39713412 ]
Map focused on RYBP/Ub of ncPRC1RYBP bound to symmetric H2AK119Ub dinucleosome
Lopez VG, Valencia-Sanchez MI, Abini-Agbomson S, Thomas JF, Lee R, De Ioannes P, Sosa BA, Armache JP, Armache KJ
Nature (2024) 636 pp. 755-761 [ DOI: doi:10.1038/s41586-024-08183-5 Pubmed: 39537923 ]
- Ring1 and yy1-binding protein (Complex from Homo sapiens)
- Dna (309-mer) (Complex from synthetic construct)
- Histones octamer (Complex from Xenopus laevis)
- Ncprc1-rybp (Complex from Homo sapiens)
- Histone h4 (Complex from Xenopus laevis)
- Histone h2b 1.1 (Complex from Xenopus laevis)
- Polycomb complex protein bmi-1 (Complex from Homo sapiens)
- E3 ubiquitin-protein ligase ring2, ubiquitin-conjugating enzyme e2 d3 (Cellular component from Homo sapiens)
- Ubiquitin (Complex from Homo sapiens)
- Histone h3.2 (Complex from Xenopus laevis)
- Dna (Complex from synthetic construct)
- Histone h2a (Complex from Xenopus laevis)
- Ncprc1rybp bound to symmetric h2ak119ub dinucleosome (Complex from Homo sapiens)
Map focused on RING1B/BMI1 of ncPRC1RYBP bound to symmetric H2AK119Ub dinucleosome
Lopez VG, Valencia-Sanchez MI, Abini-Agbomson S, Thomas JF, Lee R, De Ioannes P, Sosa BA, Armache JP, Armache KJ
Nature (2024) 636 pp. 755-761 [ DOI: doi:10.1038/s41586-024-08183-5 Pubmed: 39537923 ]
- Ring1 and yy1-binding protein (Complex from Homo sapiens)
- Dna (309-mer) (Complex from synthetic construct)
- Histones octamer (Complex from Xenopus laevis)
- Ncprc1-rybp (Complex from Homo sapiens)
- Histone h4 (Complex from Xenopus laevis)
- Histone h2b 1.1 (Complex from Xenopus laevis)
- Polycomb complex protein bmi-1 (Complex from Homo sapiens)
- E3 ubiquitin-protein ligase ring2, ubiquitin-conjugating enzyme e2 d3 (Cellular component from Homo sapiens)
- Ubiquitin (Complex from Homo sapiens)
- Histone h3.2 (Complex from Xenopus laevis)
- Dna (Complex from synthetic construct)
- Histone h2a (Complex from Xenopus laevis)
- Ncprc1rybp bound to symmetric h2ak119ub dinucleosome (Complex from Homo sapiens)
Human DNA methyltransferase 1 productive DNA complex in presence of H3Ub2-peptide
De I, Weidenhausen J, Concha N, Muller CW
PLoS One (2024) 19 pp. e0307850-e0307850 [ Pubmed: 39226277 DOI: doi:10.1371/journal.pone.0307850 ]
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 9fgs
Q-score: 0.451
To Be Published
- Spike glycoprotein,fibritin (142 kDa, Protein from Enterobacteria phage T4)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Single chain fragment scfv41n (27 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike protein in complex with the single chain fragment scfv76 (510 kDa, Complex)
- Scfv76-77 single chain fragment (Complex from Homo sapiens)
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 9fgu
Q-score: 0.349
To Be Published
- Spike glycoprotein,fibritin (135 kDa, Protein from Enterobacteria phage T4)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 spike protein in complex with the single chain fragment scfv76-77 (510 kDa, Complex)
- Sars-cov-2 (b.1.1.529/omicron variant) spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Scfv76-77 single chain fragment (28 kDa, Protein from Homo sapiens)
- Scfv76-77 single chain fragment (Complex from Homo sapiens)
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 9fgr
Q-score: 0.446
To Be Published
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Scfv76-77 single chain fragment (28 kDa, Protein from Homo sapiens)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike protein in complex with the single chain fragment scfv76 (510 kDa, Complex)
- Water (18 Da, Ligand)
- Scfv76-77 single chain fragment (Complex from Homo sapiens)
Resolution: 4.41 Å
EM Method: Single-particle
Fitted PDBs: 8c89
Q-score: 0.131
de Campos-Mata L, Trinite B, Modrego A, Tejedor Vaquero S, Pradenas E, Pons-Grifols A, Rodrigo Melero N, Carlero D, Marfil S, Santiago C, Raich-Regue D, Bueno-Carrasco MT, Tarres-Freixas F, Abanco F, Urrea V, Izquierdo-Useros N, Riveira-Munoz E, Ballana E, Perez M, Vergara-Alert J, Segales J, Carolis C, Arranz R, Blanco J, Magri G
Nat Commun (2024) 15 pp. 1051-1051 [ Pubmed: 38316751 DOI: doi:10.1038/s41467-024-45171-9 ]
- 17t2 fab heavy chain (24 kDa, Protein from Homo sapiens)
- Sars-cov-2 omicron variant spike trimer in complex with three 17t2 fabs (Complex)
- Spike protein s2' (23 kDa, Protein from Severe acute respiratory syndrome coronavirus)
- 17t2 fab (Complex from Homo sapiens)
- 17t2 fab light chain (23 kDa, Protein from Homo sapiens)
- Spike glycoprotein rbd (Complex from Severe acute respiratory syndrome coronavirus)
Structure of tissue-specific lipid scramblase ATG9B homotrimer, refined with C3 symmetry applied
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 8poe
Q-score: 0.333
Chiduza GN, Garza-Garcia A, Almacellas E, De Tito S, Pye VE, van Vliet AR, Cherepanov P, Tooze SA
Autophagy (2024) 20 pp. 557-576 [ DOI: doi:10.1080/15548627.2023.2275905 Pubmed: 37938170 ]
- Homotrimer of atg9b (303 kDa, Complex from Homo sapiens)
- Autophagy-related protein 9b (105 kDa, Protein from Homo sapiens)
Structure of tissue-specific lipid scramblase ATG9B homotrimer, refined without imposing symmetry
Chiduza GN, Garza-Garcia A, Almacellas E, De Tito S, Pye VE, van Vliet AR, Cherepanov P, Tooze SA
Autophagy (2024) 20 pp. 557-576 [ DOI: doi:10.1080/15548627.2023.2275905 Pubmed: 37938170 ]
- Homotrimer of atg9b (303 kDa, Complex from Homo sapiens)
- Autophagy-related protein 9b (Protein from Homo sapiens)