Bangaru S, Jackson AM, Copps J, Fernandez-Quintero ML, Torres JL, Richey ST, Nogal B, Sewall LM, de la Pena AT, Rehman A, Guebre-Xabier M, Girard B, Das R, Corbett-Helaire KS, Seder RA, Graham BS, Edwards DK, Patel N, Smith G, Ward AB
bioRxiv (2024) [ DOI: doi:10.1101/2024.12.11.628030 Pubmed: 39713412 ]
Resolution: 4.01 Å
EM Method: Single-particle
Fitted PDBs: 8rfb
Q-score: 0.371
Monnens Y, Theodoropoulou A, Rosier K, Bhalla K, Mahy A, Vanhoutte R, Meulemans S, Cavani E, Antanasijevic A, Lemmens I, Lee JA, Spellicy CJ, Schroer RJ, Maselli RA, Laverty CG, Agostinis P, Pagliarini DJ, Verhelst S, Marcaida MJ, Rochtus A, Dal Peraro M, Creemers JW
JCI Insight (2024) 9 [ Pubmed: 39078710 DOI: doi:10.1172/jci.insight.179276 ]
Cryo-EM structure of TRNM-f*01 Fab in complex with HIV-1 Env trimer ConC SOSIP
Resolution: 4.03 Å
EM Method: Single-particle
Fitted PDBs: 8to9
Q-score: 0.305
Wang H, Cheng C, Dal Santo JL, Shen CH, Bylund T, Henry AR, Howe CA, Hwang J, Morano NC, Morris DJ, Pletnev S, Roark RS, Zhou T, Hansen BT, Hoyt FH, Johnston TS, Wang S, Zhang B, Ambrozak DR, Becker JE, Bender MF, Changela A, Chaudhary R, Corcoran M, Corrigan AR, Foulds KE, Guo Y, Lee M, Li Y, Lin BC, Liu T, Louder MK, Mandolesi M, Mason RD, McKee K, Nair V, O'Dell S, Olia AS, Ou L, Pegu A, Raju N, Rawi R, Roberts-Torres J, Sarfo EK, Sastry M, Schaub AJ, Schmidt SD, Schramm CA, Schwartz CL, Smith SC, Stephens T, Stuckey J, Teng IT, Todd JP, Tsybovsky Y, Van Wazer DJ, Wang S, Doria-Rose NA, Fischer ER, Georgiev IS, Karlsson Hedestam GB, Sheng Z, Woodward RA, Douek DC, Koup RA, Pierson TC, Shapiro L, Shaw GM, Mascola JR, Kwong PD
Cell (2024) 187 pp. 7214-7231.e23 [ Pubmed: 39471811 DOI: doi:10.1016/j.cell.2024.10.003 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Trnm-f*01 light chain (11 kDa, Protein from Macaca mulatta)
- Envelope glycoprotein gp120 (52 kDa, Protein from Homo sapiens)
- Trnm-f*01 heavy chain (13 kDa, Protein from Macaca mulatta)
- Envelope glycoprotein gp41 (17 kDa, Protein from Homo sapiens)
- Trnm-f*01 fab in complex with hiv-1 env trimer conc sosip (Complex from Macaca mulatta)
Consensus map of 96nm repeat of human respiratory doublet microtubule, RS1-2 region
Walton T, Gui M, Velkova S, Fassad MR, Hirst RA, Haarman E, O'Callaghan C, Bottier M, Burgoyne T, Mitchison HM, Brown A
Nature (2023) 618 pp. 625-633 [ DOI: doi:10.1038/s41586-023-06140-2 Pubmed: 37258679 ]
- Axonemal complex (Complex from Homo sapiens)
Structure of the 55LCC ATPase complex
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 8rhn
Q-score: 0.361
Krishnamoorthy V, Foglizzo M, Dilley RL, Wu A, Datta A, Dutta P, Campbell LJ, Degtjarik O, Musgrove LJ, Calabrese AN, Zeqiraj E, Greenberg RA
Cell (2024) 187 pp. 2250- [ DOI: doi:10.1016/j.cell.2024.03.002 Pubmed: 38554706 ]
- Cyclin-dependent kinase 2-interacting protein (27 kDa, Protein from Homo sapiens)
- Atpase family gene 2 protein homolog b (83 kDa, Protein from Homo sapiens)
- Cdna flj55172 (29 kDa, Protein from Homo sapiens)
- Structure of the 55lcc atpase complex (649 kDa, Complex from Homo sapiens)
- Atpase family gene 2 protein homolog a (101 kDa, Protein from Homo sapiens)
Cryo-EM structure of full-length human NLRC4 inflammasome with C12 symmetry
Resolution: 4.46 Å
EM Method: Single-particle
Fitted PDBs: 8fw9
Q-score: 0.24
Consensus map of 96nm repeat of human respiratory doublet microtubule, RS3 region
Walton T, Gui M, Velkova S, Fassad MR, Hirst RA, Haarman E, O'Callaghan C, Bottier M, Burgoyne T, Mitchison HM, Brown A
Nature (2023) 618 pp. 625-633 [ DOI: doi:10.1038/s41586-023-06140-2 Pubmed: 37258679 ]
- Axonemal complex (Complex from Homo sapiens)
96nm repeat of human respiratory doublet microtubule and associated axonemal complexes
Walton T, Gui M, Velkova S, Fassad MR, Hirst RA, Haarman E, O'Callaghan C, Bottier M, Burgoyne T, Mitchison HM, Brown A
Nature (2023) 618 pp. 625-633 [ DOI: doi:10.1038/s41586-023-06140-2 Pubmed: 37258679 ]
- Dynein axonemal heavy chain 12 (454 kDa, Protein from human)
- Cilia- and flagella-associated protein 58 (103 kDa, Protein from human)
- Acta2 (42 kDa, Protein from human)
- Cilia- and flagella-associated protein 61 (141 kDa, Protein from human)
- Dynein axonemal heavy chain 3 (471 kDa, Protein from human)
- Enkurin (29 kDa, Protein from human)
- Cytochrome b5 domain-containing protein 1 (26 kDa, Protein from human)
- Dynein regulatory complex protein 11 (95 kDa, Protein from human)
- Dynein axonemal intermediate chain 2 (68 kDa, Protein from human)
- Cilia- and flagella-associated protein 20 (22 kDa, Protein from human)
- Cilia- and flagella-associated protein 44 (214 kDa, Protein from human)
- Dynein axonemal intermediate chain 4 (94 kDa, Protein from human)
- Morn repeat-containing protein 3 (27 kDa, Protein from human)
- Thioredoxin domain-containing protein 6 (36 kDa, Protein from human)
- Dynein axonemal heavy chain 2 (508 kDa, Protein from human)
- Ropporin-1-like protein (26 kDa, Protein from human)
- Parkin coregulated gene protein (29 kDa, Protein from human)
- Meiosis-specific nuclear structural protein 1 (60 kDa, Protein from human)
- Cilia- and flagella-associated protein 53 (61 kDa, Protein from human)
- Ef-hand domain-containing family member c2 (87 kDa, Protein from human)
- Dynein axonemal heavy chain 1 (488 kDa, Protein from human)
- Radial spoke head protein 3 homolog (63 kDa, Protein from human)
- Protein flattop (19 kDa, Protein from human)
- Probable inactive peptidyl-prolyl cis-trans isomerase-like 6 (35 kDa, Protein from human)
- Sperm surface protein sp17 (17 kDa, Protein from human)
- Cilia- and flagella-associated protein 276 (19 kDa, Protein from human)
- Tektin-1 (48 kDa, Protein from human)
- Cilia- and flagella-associated protein 299 (26 kDa, Protein from human)
- Dpy30 domain-containing protein 2 (20 kDa, Protein from human)
- Radial spoke head protein 9 homolog (31 kDa, Protein from human)
- Cilia- and flagella-associated protein 57 (145 kDa, Protein from human)
- Dynein axonemal heavy chain 5 (529 kDa, Protein from human)
- Dynein light chain tctex-type 1 (12 kDa, Protein from human)
- Tubulin alpha-1a chain (50 kDa, Protein from human)
- Dynein regulatory complex protein 10 (52 kDa, Protein from human)
- Cilia- and flagella- associated protein 210 (66 kDa, Protein from human)
- Piercer of microtubule wall 1 protein (15 kDa, Protein from human)
- Dynein regulatory complex subunit 7 (103 kDa, Protein from human)
- Iq and ubiquitin-like domain-containing protein (92 kDa, Protein from human)
- Coiled-coil domain-containing protein 39 (110 kDa, Protein from human)
- Protein fam166c (23 kDa, Protein from human)
- Outer dynein arm-docking complex subunit 2 (115 kDa, Protein from human)
- Dynein axonemal heavy chain 7 (461 kDa, Protein from human)
- Dynein regulatory complex subunit 5 (55 kDa, Protein from human)
- Cilia- and flagella-associated protein 77 (33 kDa, Protein from human)
- Dynein regulatory complex subunit 2 (57 kDa, Protein from human)
- Dynein regulatory complex subunit 4 (56 kDa, Protein from human)
- Coiled-coil domain-containing protein 113 (44 kDa, Protein from human)
- Cilia- and flagella-associated protein 45 (65 kDa, Protein from human)
- Cilia- and flagella-associated protein 73 (35 kDa, Protein from human)
- Tetratricopeptide repeat protein 29 (55 kDa, Protein from human)
- Dynein axonemal heavy chain 6 (476 kDa, Protein from human)
- Cilia- and flagella-associated protein 91 (90 kDa, Protein from human)
- Sperm acrosome-associated protein 9 (25 kDa, Protein from human)
- Dynein axonemal light chain 1 (21 kDa, Protein from human)
- Leucine-rich repeat-containing protein 34 (51 kDa, Protein from human)
- Outer dynein arm-docking complex subunit 4 (76 kDa, Protein from human)
- Dynein light chain roadblock-type 2 (10 kDa, Protein from human)
- Coiled-coil domain-containing protein 40 (130 kDa, Protein from human)
- Protein fam166b (30 kDa, Protein from human)
- Dynein axonemal intermediate chain 3 (103 kDa, Protein from human)
- Dynein regulatory complex protein 1 (87 kDa, Protein from human)
- Cilia- and flagella-associated protein 161 (34 kDa, Protein from human)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Dynein regulatory complex protein 9 (52 kDa, Protein from human)
- Cilia- and flagella-associated protein 144 (16 kDa, Protein from human)
- Outer dynein arm-docking complex subunit 1 (75 kDa, Protein from human)
- Unknown (6 kDa, Protein from human)
- Dynein axonemal intermediate chain 7 (83 kDa, Protein from human)
- Axonemal complex (Complex from Homo sapiens)
- Axonemal dynein light intermediate polypeptide 1 (29 kDa, Protein from human)
- Dynein axonemal intermediate chain 1 (79 kDa, Protein from human)
- Dnaj homolog subfamily b member 13 (36 kDa, Protein from human)
- Coiled-coil domain-containing protein 96 (62 kDa, Protein from human)
- Magnesium ion (24 Da, Ligand)
- Tektin-2 (49 kDa, Protein from human)
- Dynein regulatory complex protein 8 (29 kDa, Protein from human)
- Cilia- and flagella-associated protein 43 (192 kDa, Protein from human)
- Radial spoke head 14 homolog (38 kDa, Protein from human)
- Radial spoke head protein 4 homolog a (80 kDa, Protein from human)
- Uncharacterized protein cfap68 (17 kDa, Protein from human)
- Dynein regulatory complex subunit 3 (61 kDa, Protein from human)
- Cilia- and flagella-associated protein 100 (71 kDa, Protein from human)
- Calmodulin-1 (16 kDa, Protein from human)
- Uncharacterized protein cfap90 (17 kDa, Protein from human)
- Nucleoside diphosphate kinase homolog 5 (24 kDa, Protein from human)
- Dynll1 (10 kDa, Protein from human)
- Rib43a-like with coiled-coils protein 2 (45 kDa, Protein from human)
- Zinc finger mynd domain-containing protein 12 (41 kDa, Protein from human)
- Outer dynein arm-docking complex subunit 3 (69 kDa, Protein from human)
- Rib43a-like with coiled-coils protein 1 (44 kDa, Protein from human)
- Cilia- and flagella-associated protein 95 (26 kDa, Protein from human)
- Centrin-2 (19 kDa, Protein from human)
- Piercer of microtubule wall 2 protein (13 kDa, Protein from human)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Cilia- and flagella-associated protein 107 (23 kDa, Protein from human)
- Cilia- and flagella-associated protein 251 (130 kDa, Protein from human)
- Dynein light chain roadblock-type 1 (10 kDa, Protein from human)
- Ef-hand domain-containing protein 1 (74 kDa, Protein from human)
- Calaxin (24 kDa, Protein from human)
- Nucleoside diphosphate kinase 7 (42 kDa, Protein from human)
- Radial spoke head 1 homolog (35 kDa, Protein from human)
- Dynein light chain tctex-type protein 2b (16 kDa, Protein from human)
- Cilia- and flagella-associated protein 141 (12 kDa, Protein from human)
- Tubulin beta-4b chain (49 kDa, Protein from human)
- Sperm-associated antigen 8 (51 kDa, Protein from human)
- Cilia- and flagella-associated protein 52 (68 kDa, Protein from human)
- Dynein axonemal heavy chain 9 (512 kDa, Protein from human)
- Ef-hand domain-containing family member b (93 kDa, Protein from human)
- Dynein axonemal heavy chain 10 (529 kDa, Protein from human)
SARS-CoV-2 Omicron BA.1 Spike in complex with IY-2A
Resolution: 4.28 Å
EM Method: Single-particle
Fitted PDBs: 8hhz
Q-score: 0.207
Huang KA, Chen X, Mohapatra A, Nguyen HTV, Schimanski L, Tan TK, Rijal P, Vester SK, Hills RA, Howarth M, Keeffe JR, Cohen AA, Kakutani LM, Wu YM, Shahed-Al-Mahmud M, Chou YC, Bjorkman PJ, Townsend AR, Ma C
Nat Commun (2023) 14 pp. 311-311 [ Pubmed: 36658148 DOI: doi:10.1038/s41467-023-35949-8 ]
- Iy-2a fab heavy chain (23 kDa, Protein from Homo sapiens)
- Sars-cov-2 delta spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Iy-2a fab light chain (23 kDa, Protein from Homo sapiens)
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Complex of delta spike and iy-2a with two fabs bound to one spike in 3-rbd-up conformation (550 kDa, Complex)
- Iy-2a (Complex from Homo sapiens)
Subtomogram Average of Soluble and ER Membrane-Associated Ribosomes in the Decoding-Sampling State
Gemmer M, Chaillet ML, van Loenhout J, Cuevas Arenas R, Vismpas D, Grollers-Mulderij M, Koh FA, Albanese P, Scheltema RA, Howes SC, Kotecha A, Fedry J, Forster F
Nature (2023) 614 pp. 160-167 [ DOI: doi:10.1038/s41586-022-05638-5 Pubmed: 36697828 ]