80S ribosome with angiogenin and tRNAAla
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9bdn
Q-score: 0.469
Loveland AB, Koh CS, Ganesan R, Jacobson A, Korostelev AA
Nature (2024) 630 pp. 769-776 [ DOI: doi:10.1038/s41586-024-07508-8 Pubmed: 38718836 ]
- 60s ribosomal protein l8 (26 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l18a (20 kDa, Protein from Oryctolagus cuniculus)
- Mrna (8 kDa, RNA from Homo sapiens)
- 60s ribosomal protein l14 (16 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s13 (17 kDa, Protein from Oryctolagus cuniculus)
- 28s rrna (1 MDa, RNA from Oryctolagus cuniculus)
- 60s acidic ribosomal protein p0 (21 kDa, Protein from Oryctolagus cuniculus)
- Small ribosomal subunit protein es19 (15 kDa, Protein from Oryctolagus cuniculus)
- Es26 (11 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l30 (10 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l5 (34 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s9 (21 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s18 (16 kDa, Protein from Oryctolagus cuniculus)
- 18s rrna (602 kDa, RNA from Oryctolagus cuniculus)
- 60s ribosomal protein l35 (14 kDa, Protein from Oryctolagus cuniculus)
- Trnafmet (24 kDa, RNA from Escherichia coli)
- 40s ribosomal protein s15 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l3 (45 kDa, Protein from Oryctolagus cuniculus)
- Large ribosomal subunit protein el29 (26 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s29 (6 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l35a (12 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (11 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l31 (12 kDa, Protein from Oryctolagus cuniculus)
- Large ribosomal subunit protein ul23 (13 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l4 (41 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s2 (24 kDa, Protein from Oryctolagus cuniculus)
- Large ribosomal subunit protein el40 (6 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s23 (15 kDa, Protein from Oryctolagus cuniculus)
- Angiogenin (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s4 (29 kDa, Protein from Oryctolagus cuniculus)
- Large ribosomal subunit protein ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s17 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s6 (27 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s15a (14 kDa, Protein from Oryctolagus cuniculus)
- 40s_sa_c domain-containing protein (24 kDa, Protein from Oryctolagus cuniculus)
- Large ribosomal subunit protein el18 (21 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l7 (26 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s11 (17 kDa, Protein from Oryctolagus cuniculus)
- El41 (3 kDa, Protein from Oryctolagus cuniculus)
- El42 (12 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l24 (14 kDa, Protein from Oryctolagus cuniculus)
- Small ribosomal subunit protein us11 (14 kDa, Protein from Oryctolagus cuniculus)
- 80s ribosome with angiogenin and trnaala (4 MDa, Complex)
- Ribosomal protein s5 (21 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s25 (8 kDa, Protein from Oryctolagus cuniculus)
- 5s rrna (38 kDa, RNA from Oryctolagus cuniculus)
- 60s ribosomal protein l21 (18 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l39 (6 kDa, Protein from Oryctolagus cuniculus)
- Ul11 (16 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s10 (11 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l9 (21 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l23 (13 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l34 (12 kDa, Protein from Oryctolagus cuniculus)
- Large ribosomal subunit protein el22 (11 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
- Large ribosomal subunit protein el13 (24 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s24 (14 kDa, Protein from Oryctolagus cuniculus)
- Receptor of activated protein c kinase 1 (34 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l26 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l37 (10 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s20 (11 kDa, Protein from Oryctolagus cuniculus)
- Trnaala (24 kDa, RNA from Saccharomyces cerevisiae)
- 40s ribosomal protein s3a (24 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s12 (13 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l19 (21 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27a (16 kDa, Protein from Oryctolagus cuniculus)
- Large ribosomal subunit protein el38 (8 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3 (25 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l17 (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l37a (10 kDa, Protein from Oryctolagus cuniculus)
- Large ribosomal subunit protein el32 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s28 (7 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l6 (28 kDa, Protein from Oryctolagus cuniculus)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
- Large ribosomal subunit protein el8 (27 kDa, Protein from Oryctolagus cuniculus)
- 5.8s rrna (50 kDa, RNA from Oryctolagus cuniculus)
- 60s ribosomal protein l11 (19 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l28 (14 kDa, Protein from Oryctolagus cuniculus)
- Small ribosomal subunit protein us9 (16 kDa, Protein from Oryctolagus cuniculus)
- Small ribosomal subunit protein es7 (21 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s30 (6 kDa, Protein from Oryctolagus cuniculus)
80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 9bdp
Q-score: 0.371
Loveland AB, Koh CS, Ganesan R, Jacobson A, Korostelev AA
Nature (2024) 630 pp. 769-776 [ DOI: doi:10.1038/s41586-024-07508-8 Pubmed: 38718836 ]
- 60s ribosomal protein l8 (26 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l18a (20 kDa, Protein from Oryctolagus cuniculus)
- Mrna (8 kDa, RNA from Homo sapiens)
- 60s ribosomal protein l14 (16 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s13 (17 kDa, Protein from Oryctolagus cuniculus)
- 28s rrna (1 MDa, RNA from Oryctolagus cuniculus)
- 60s acidic ribosomal protein p0 (21 kDa, Protein from Oryctolagus cuniculus)
- Small ribosomal subunit protein es19 (15 kDa, Protein from Oryctolagus cuniculus)
- Es26 (11 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l30 (10 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l5 (34 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s9 (21 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s18 (16 kDa, Protein from Oryctolagus cuniculus)
- 18s rrna (602 kDa, RNA from Oryctolagus cuniculus)
- 60s ribosomal protein l35 (14 kDa, Protein from Oryctolagus cuniculus)
- Trnafmet (24 kDa, RNA from Escherichia coli)
- 40s ribosomal protein s15 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l3 (45 kDa, Protein from Oryctolagus cuniculus)
- Large ribosomal subunit protein el29 (26 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s29 (6 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l35a (12 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (11 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l31 (12 kDa, Protein from Oryctolagus cuniculus)
- Large ribosomal subunit protein ul23 (13 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l4 (41 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s2 (24 kDa, Protein from Oryctolagus cuniculus)
- Large ribosomal subunit protein el40 (6 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s23 (15 kDa, Protein from Oryctolagus cuniculus)
- Angiogenin (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s25 (29 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s4 (29 kDa, Protein from Oryctolagus cuniculus)
- Large ribosomal subunit protein ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s17 (15 kDa, Protein from Oryctolagus cuniculus)
- 80s ribosome bound with angiogenin and complex of eef1a and ala-trnaala (4 MDa, Complex)
- 40s ribosomal protein s6 (27 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s15a (14 kDa, Protein from Oryctolagus cuniculus)
- 40s_sa_c domain-containing protein (24 kDa, Protein from Oryctolagus cuniculus)
- Large ribosomal subunit protein el18 (21 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l7 (26 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s11 (17 kDa, Protein from Oryctolagus cuniculus)
- El41 (3 kDa, Protein from Oryctolagus cuniculus)
- El42 (12 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l24 (14 kDa, Protein from Oryctolagus cuniculus)
- Small ribosomal subunit protein us11 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s5 (21 kDa, Protein from Oryctolagus cuniculus)
- 5s rrna (38 kDa, RNA from Oryctolagus cuniculus)
- 60s ribosomal protein l21 (18 kDa, Protein from Oryctolagus cuniculus)
- Elongation factor 1-alpha (50 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l39 (6 kDa, Protein from Oryctolagus cuniculus)
- Ul11 (16 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s10 (11 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l9 (21 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l23 (13 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l34 (12 kDa, Protein from Oryctolagus cuniculus)
- Large ribosomal subunit protein el22 (11 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
- Large ribosomal subunit protein el13 (24 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s24 (14 kDa, Protein from Oryctolagus cuniculus)
- Receptor of activated protein c kinase 1 (34 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l26 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l37 (10 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s20 (11 kDa, Protein from Oryctolagus cuniculus)
- Trnaala (24 kDa, RNA from Saccharomyces cerevisiae)
- 40s ribosomal protein s3a (24 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s12 (13 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l19 (21 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27a (16 kDa, Protein from Oryctolagus cuniculus)
- Large ribosomal subunit protein el38 (8 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3 (25 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l17 (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l37a (10 kDa, Protein from Oryctolagus cuniculus)
- Large ribosomal subunit protein el32 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s28 (7 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l6 (28 kDa, Protein from Oryctolagus cuniculus)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
- Large ribosomal subunit protein el8 (27 kDa, Protein from Oryctolagus cuniculus)
- 5.8s rrna (50 kDa, RNA from Oryctolagus cuniculus)
- 60s ribosomal protein l11 (19 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l28 (14 kDa, Protein from Oryctolagus cuniculus)
- Small ribosomal subunit protein us9 (16 kDa, Protein from Oryctolagus cuniculus)
- Small ribosomal subunit protein es7 (21 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s30 (6 kDa, Protein from Oryctolagus cuniculus)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7thj
Q-score: 0.423
Gaubitz C, Liu X, Pajak J, Stone NP, Hayes JA, Demo G, Kelch BA
eLife (2022) 11 [ Pubmed: 35179493 DOI: doi:10.7554/eLife.74175 ]
- Rfc5 (Protein from Saccharomyces cerevisiae)
- Pcna (Protein from Saccharomyces cerevisiae)
- Replication factor c (rfc), the eukaryotic clamp loader (336 kDa, Complex from Saccharomyces cerevisiae)
- Rfc1 (Protein from Saccharomyces cerevisiae)
- Rfc3 (RNA from Saccharomyces cerevisiae)
- Rfc4 (Protein from Saccharomyces cerevisiae)
- Rfc2 (Protein from Saccharomyces cerevisiae)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7tic
Q-score: 0.395
Gaubitz C, Liu X, Pajak J, Stone NP, Hayes JA, Demo G, Kelch PhD BA
eLife (2022) 11 [ Pubmed: 35179493 DOI: doi:10.7554/eLife.74175 ]
- Rfc5 (Protein from Saccharomyces cerevisiae)
- Pcna (Protein from Saccharomyces cerevisiae)
- Replication factor c (rfc), the eukaryotic clamp loader (336 kDa, Complex from Saccharomyces cerevisiae)
- Rfc1 (Protein from Saccharomyces cerevisiae)
- Rfc3 (Protein from Saccharomyces cerevisiae)
- Rfc4 (Protein from Saccharomyces cerevisiae)
- Rfc2 (Protein from Saccharomyces cerevisiae)
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7thv
Q-score: 0.406
Gaubitz C, Liu X, Pajak J, Stone NP, Hayes JA, Demo G, Kelch PhD BA
eLife (2022) 11 [ Pubmed: 35179493 DOI: doi:10.7554/eLife.74175 ]
- Pcna (Protein from Saccharomyces cerevisiae)
- Replication factor c (rfc), the eukaryotic clamp loader (336 kDa, Complex from Saccharomyces cerevisiae)
- Rfc1 (Protein from Saccharomyces cerevisiae)
- Rfc5 (RNA from Saccharomyces cerevisiae)
- Rfc3 (Protein from Saccharomyces cerevisiae)
- Rfc4 (Protein from Saccharomyces cerevisiae)
- Rfc2 (Protein from Saccharomyces cerevisiae)
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7tku
Q-score: 0.405
Gaubitz C, Liu X, Pajak J, Stone NP, Hayes JA, Demo G, Kelch PhD BA
eLife (2022) 11 [ Pubmed: 35179493 DOI: doi:10.7554/eLife.74175 ]
- Rfc5 (Protein from Saccharomyces cerevisiae)
- Pcna (Protein from Saccharomyces cerevisiae)
- Rfc1 (Protein from Saccharomyces cerevisiae)
- Rfc3 (Protein from Saccharomyces cerevisiae)
- Rfc4 (Protein from Saccharomyces cerevisiae)
- Rfc2 (Protein from Saccharomyces cerevisiae)
- Structure of the yeast clamp loader (replication factor c rfc) bound to the open sliding clamp (proliferating cell nuclear antigen pcna) (336 kDa, Complex from Saccharomyces cerevisiae)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7tib
Q-score: 0.452
Gaubitz C, Liu X, Pajak J, Stone NP, Hayes JA, Demo G, Kelch PhD BA
eLife (2022) 11 [ Pubmed: 35179493 DOI: doi:10.7554/eLife.74175 ]
- Template (DNA from Saccharomyces cerevisiae)
- Replication factor c (rfc) bound to the open sliding clamp proliferating cell nuclear antigen (pcna) (336 kDa, Complex from Saccharomyces cerevisiae)
- Rfc5 (Protein from Saccharomyces cerevisiae)
- Pcna (Protein from Saccharomyces cerevisiae)
- Rfc1 (Protein from Saccharomyces cerevisiae)
- Primer (DNA from Saccharomyces cerevisiae)
- Rfc3 (Protein from Saccharomyces cerevisiae)
- Rfc4 (Protein from Saccharomyces cerevisiae)
- Rfc2 (Protein from Saccharomyces cerevisiae)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7tid
Q-score: 0.463
Gaubitz C, Liu X, Pajak J, Stone NP, Hayes JA, Demo G, Kelch PhD BA
eLife (2022) 11 [ Pubmed: 35179493 DOI: doi:10.7554/eLife.74175 ]
- Template (DNA from Saccharomyces cerevisiae)
- Replication factor c (rfc) bound to the open sliding clamp proliferating cell nuclear antigen (pcna) (336 kDa, Complex from Saccharomyces cerevisiae)
- Rfc5 (Protein from Saccharomyces cerevisiae)
- Pcna (Protein from Saccharomyces cerevisiae)
- Rfc1 (Protein from Saccharomyces cerevisiae)
- Primer (DNA from Saccharomyces cerevisiae)
- Rfc3 (Protein from Saccharomyces cerevisiae)
- Rfc4 (Protein from Saccharomyces cerevisiae)
- Rfc2 (Protein from Saccharomyces cerevisiae)
Engineered disulfide cross-linked closed conformation of the Yeast gamma-TuRC(SS)
Resolution: 3.0 Å
EM Method: Helical reconstruction
Fitted PDBs: 7m2w
Q-score: 0.435
Brilot AF, Lyon AS, Zelter A, Viswanath S, Maxwell A, MacCoss MJ, Muller EG, Sali A, Davis TN, Agard DA
eLife (2021) 10 [ DOI: doi:10.7554/eLife.65168 Pubmed: 33949948 ]
- Spindle pole body component spc98 (98 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Engineered disulfide cross-linked closed conformation of the yeast gamma-turc(ss) (Complex from Saccharomyces cerevisiae)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Tubulin gamma chain (52 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Spindle pole body component spc97 (96 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Spindle pole body component 110 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))