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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

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perform basic research in molecular biology

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offer vital services to scientists in the member states

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scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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* AND software_ft:"CISTEM" AND natural_source_ncbi_code:"4932" AND author_name:"Aa"

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EMD-44463

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80S ribosome with angiogenin and tRNAAla

Release date: July 24, 2024
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9bdn
Q-score: 0.469

Loveland AB, Koh CS, Ganesan R, Jacobson A, Korostelev AA

Nature (2024) 630 pp. 769-776 [ DOI: doi:10.1038/s41586-024-07508-8 Pubmed: 38718836 ]

Sample:

60s ribosomal protein l8 (26 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l18a (20 kDa, Protein from Oryctolagus cuniculus)
Mrna (8 kDa, RNA from Homo sapiens)
60s ribosomal protein l14 (16 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s13 (17 kDa, Protein from Oryctolagus cuniculus)
28s rrna (1 MDa, RNA from Oryctolagus cuniculus)
60s acidic ribosomal protein p0 (21 kDa, Protein from Oryctolagus cuniculus)
Small ribosomal subunit protein es19 (15 kDa, Protein from Oryctolagus cuniculus)
Es26 (11 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l30 (10 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l5 (34 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s9 (21 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s18 (16 kDa, Protein from Oryctolagus cuniculus)
18s rrna (602 kDa, RNA from Oryctolagus cuniculus)
60s ribosomal protein l35 (14 kDa, Protein from Oryctolagus cuniculus)
Trnafmet (24 kDa, RNA from Escherichia coli)
40s ribosomal protein s15 (14 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l3 (45 kDa, Protein from Oryctolagus cuniculus)
Large ribosomal subunit protein el29 (26 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s29 (6 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l35a (12 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l36 (11 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l31 (12 kDa, Protein from Oryctolagus cuniculus)
Large ribosomal subunit protein ul23 (13 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l4 (41 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s2 (24 kDa, Protein from Oryctolagus cuniculus)
Large ribosomal subunit protein el40 (6 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s23 (15 kDa, Protein from Oryctolagus cuniculus)
Angiogenin (16 kDa, Protein from Homo sapiens)
40s ribosomal protein s4 (29 kDa, Protein from Oryctolagus cuniculus)
Large ribosomal subunit protein ul13 (23 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s17 (15 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s6 (27 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s15a (14 kDa, Protein from Oryctolagus cuniculus)
40s_sa_c domain-containing protein (24 kDa, Protein from Oryctolagus cuniculus)
Large ribosomal subunit protein el18 (21 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l7 (26 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s11 (17 kDa, Protein from Oryctolagus cuniculus)
El41 (3 kDa, Protein from Oryctolagus cuniculus)
El42 (12 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l24 (14 kDa, Protein from Oryctolagus cuniculus)
Small ribosomal subunit protein us11 (14 kDa, Protein from Oryctolagus cuniculus)
80s ribosome with angiogenin and trnaala (4 MDa, Complex)
Ribosomal protein s5 (21 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s25 (8 kDa, Protein from Oryctolagus cuniculus)
5s rrna (38 kDa, RNA from Oryctolagus cuniculus)
60s ribosomal protein l21 (18 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l39 (6 kDa, Protein from Oryctolagus cuniculus)
Ul11 (16 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s10 (11 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l9 (21 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l23 (13 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l34 (12 kDa, Protein from Oryctolagus cuniculus)
Large ribosomal subunit protein el22 (11 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
Large ribosomal subunit protein el13 (24 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s24 (14 kDa, Protein from Oryctolagus cuniculus)
Receptor of activated protein c kinase 1 (34 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l26 (15 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l37 (10 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s20 (11 kDa, Protein from Oryctolagus cuniculus)
Trnaala (24 kDa, RNA from Saccharomyces cerevisiae)
40s ribosomal protein s3a (24 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s12 (13 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l19 (21 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l27a (16 kDa, Protein from Oryctolagus cuniculus)
Large ribosomal subunit protein el38 (8 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s3 (25 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l17 (17 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l37a (10 kDa, Protein from Oryctolagus cuniculus)
Large ribosomal subunit protein el32 (15 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s28 (7 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l6 (28 kDa, Protein from Oryctolagus cuniculus)
Es21 (9 kDa, Protein from Oryctolagus cuniculus)
Large ribosomal subunit protein el8 (27 kDa, Protein from Oryctolagus cuniculus)
5.8s rrna (50 kDa, RNA from Oryctolagus cuniculus)
60s ribosomal protein l11 (19 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l28 (14 kDa, Protein from Oryctolagus cuniculus)
Small ribosomal subunit protein us9 (16 kDa, Protein from Oryctolagus cuniculus)
Small ribosomal subunit protein es7 (21 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s30 (6 kDa, Protein from Oryctolagus cuniculus)

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EMD-44464

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80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Release date: July 24, 2024
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 9bdp
Q-score: 0.371

Loveland AB, Koh CS, Ganesan R, Jacobson A, Korostelev AA

Nature (2024) 630 pp. 769-776 [ DOI: doi:10.1038/s41586-024-07508-8 Pubmed: 38718836 ]

Sample:

60s ribosomal protein l8 (26 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l18a (20 kDa, Protein from Oryctolagus cuniculus)
Mrna (8 kDa, RNA from Homo sapiens)
60s ribosomal protein l14 (16 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s13 (17 kDa, Protein from Oryctolagus cuniculus)
28s rrna (1 MDa, RNA from Oryctolagus cuniculus)
60s acidic ribosomal protein p0 (21 kDa, Protein from Oryctolagus cuniculus)
Small ribosomal subunit protein es19 (15 kDa, Protein from Oryctolagus cuniculus)
Es26 (11 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l30 (10 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l5 (34 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s9 (21 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s18 (16 kDa, Protein from Oryctolagus cuniculus)
18s rrna (602 kDa, RNA from Oryctolagus cuniculus)
60s ribosomal protein l35 (14 kDa, Protein from Oryctolagus cuniculus)
Trnafmet (24 kDa, RNA from Escherichia coli)
40s ribosomal protein s15 (14 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l3 (45 kDa, Protein from Oryctolagus cuniculus)
Large ribosomal subunit protein el29 (26 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s29 (6 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l35a (12 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l36 (11 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l31 (12 kDa, Protein from Oryctolagus cuniculus)
Large ribosomal subunit protein ul23 (13 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l4 (41 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s2 (24 kDa, Protein from Oryctolagus cuniculus)
Large ribosomal subunit protein el40 (6 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s23 (15 kDa, Protein from Oryctolagus cuniculus)
Angiogenin (16 kDa, Protein from Homo sapiens)
40s ribosomal protein s25 (29 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s4 (29 kDa, Protein from Oryctolagus cuniculus)
Large ribosomal subunit protein ul13 (23 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s17 (15 kDa, Protein from Oryctolagus cuniculus)
80s ribosome bound with angiogenin and complex of eef1a and ala-trnaala (4 MDa, Complex)
40s ribosomal protein s6 (27 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s15a (14 kDa, Protein from Oryctolagus cuniculus)
40s_sa_c domain-containing protein (24 kDa, Protein from Oryctolagus cuniculus)
Large ribosomal subunit protein el18 (21 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l7 (26 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s11 (17 kDa, Protein from Oryctolagus cuniculus)
El41 (3 kDa, Protein from Oryctolagus cuniculus)
El42 (12 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l24 (14 kDa, Protein from Oryctolagus cuniculus)
Small ribosomal subunit protein us11 (14 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein s5 (21 kDa, Protein from Oryctolagus cuniculus)
5s rrna (38 kDa, RNA from Oryctolagus cuniculus)
60s ribosomal protein l21 (18 kDa, Protein from Oryctolagus cuniculus)
Elongation factor 1-alpha (50 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l39 (6 kDa, Protein from Oryctolagus cuniculus)
Ul11 (16 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s10 (11 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l9 (21 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l23 (13 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l34 (12 kDa, Protein from Oryctolagus cuniculus)
Large ribosomal subunit protein el22 (11 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
Large ribosomal subunit protein el13 (24 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s24 (14 kDa, Protein from Oryctolagus cuniculus)
Receptor of activated protein c kinase 1 (34 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l26 (15 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l37 (10 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s20 (11 kDa, Protein from Oryctolagus cuniculus)
Trnaala (24 kDa, RNA from Saccharomyces cerevisiae)
40s ribosomal protein s3a (24 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s12 (13 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l19 (21 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l27a (16 kDa, Protein from Oryctolagus cuniculus)
Large ribosomal subunit protein el38 (8 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s3 (25 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l17 (17 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l37a (10 kDa, Protein from Oryctolagus cuniculus)
Large ribosomal subunit protein el32 (15 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s28 (7 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l6 (28 kDa, Protein from Oryctolagus cuniculus)
Es21 (9 kDa, Protein from Oryctolagus cuniculus)
Large ribosomal subunit protein el8 (27 kDa, Protein from Oryctolagus cuniculus)
5.8s rrna (50 kDa, RNA from Oryctolagus cuniculus)
60s ribosomal protein l11 (19 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l28 (14 kDa, Protein from Oryctolagus cuniculus)
Small ribosomal subunit protein us9 (16 kDa, Protein from Oryctolagus cuniculus)
Small ribosomal subunit protein es7 (21 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s30 (6 kDa, Protein from Oryctolagus cuniculus)

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EMD-10657

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E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Release date: Nov. 4, 2020
Resolution: 2.54 Å
EM Method: Single-particle
Fitted PDBs: 6xzb
Q-score: 0.432

Pichkur EB, Paleskava A, Tereshchenkov AG, Kasatsky P, Komarova ES, Shiriaev DI, Bogdanov AA, Dontsova OA, Osterman IA, Sergiev PV, Polikanov YS, Myasnikov AG, Konevega AL

RNA (2020) 26 pp. 715-723 [ DOI: doi:10.1261/rna.073817.119 Pubmed: 32144191 ]

Sample:

50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli (strain K12))
16s rrna (497 kDa, RNA from Escherichia coli K-12)
50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli (strain K12))
E. coli 70s ribosome in complex with dirithromycin, fmet-phe-trna(phe) and deacylated trna(imet). (2 MDa, Complex)
Fmet-phe-trna(phe) (Complex from Saccharomyces cerevisiae)
50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli (strain K12))
Dirithromycin (835 Da, Ligand)
50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l27 (8 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli (strain K12))
Fmet-phe-trna(phe) (25 kDa, RNA from Saccharomyces cerevisiae)
50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s18 (6 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s7 (16 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s6 (12 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l10 (14 kDa, Protein from Escherichia coli (strain K12))
E. coli 70s ribosome (Complex from Escherichia coli (strain K12))
30s ribosomal protein s19 (9 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s5 (16 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli (strain K12))
Deacylated trnai(met) (24 kDa, RNA from Escherichia coli K-12)
50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s3 (23 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s11 (12 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l23 (10 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli (strain K12))
23s rrna (939 kDa, RNA from Escherichia coli K-12)
50s ribosomal protein l33 (5 kDa, Protein from Escherichia coli (strain K12))
5s rrna (38 kDa, RNA from Escherichia coli K-12)
30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s2 (24 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s21 (6 kDa, Protein from Escherichia coli (strain K12))

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Sort by: Download

Showing 1 - 3 of 3. Page 1 of 1

Display: Statistics

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Select database:

EMDB [3]

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