Human p97/VCP R155H mutant structure with a triazole inhibitor (NSC804515)
Nandi P, DeVore K, Wang F, Li S, Walker JD, Truong TT, LaPorte MG, Wipf P, Schlager H, McCleerey J, Paquette W, Columbres RCA, Gan T, Poh YP, Fromme P, Flint AJ, Wolf M, Huryn DM, Chou TF, Chiu PL
Commun Chem (2024) 7 pp. 177-177 [ DOI: doi:10.1038/s42004-024-01267-3 Pubmed: 39122922 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- N-[3-(2,5-difluoro-4-{[(4m)-5-(hexylsulfanyl)-4-(pyridin-3-yl)-4h-1,2,4-triazol-3-yl]methoxy}phenyl)prop-2-yn-1-yl]propanamide (513 Da, Ligand)
- Transitional endoplasmic reticulum atpase (89 kDa, Protein from Homo sapiens)
- P97/vcp aaa+ atpase r155h mutant/nsc804515 (536 kDa, Complex from Homo sapiens)
D-cycloserine and glutamate bound Human GluN1a-GluN2C NMDA receptor in intact conformation
Resolution: 3.96 Å
EM Method: Single-particle
Fitted PDBs: 8e92
Q-score: 0.397
Chou TH, Kang H, Simorowski N, Traynelis SF, Furukawa H
Mol Cell (2022) 82 pp. 4548- [ DOI: doi:10.1016/j.molcel.2022.10.008 Pubmed: 36309015 ]
- Glutamate receptor ionotropic, nmda 2c (96 kDa, Protein from Homo sapiens)
- Hetero-tetrameric glun1a-glun2c nmda receptors (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Glutamate receptor ionotropic, nmda 1 (95 kDa, Protein from Homo sapiens)
D-cycloserine and glutamate bound Human GluN1a-GluN2C NMDA receptor in splayed conformation
Resolution: 3.71 Å
EM Method: Single-particle
Fitted PDBs: 8e93
Q-score: 0.443
Chou TH, Kang H, Simorowski N, Traynelis SF, Furukawa H
Mol Cell (2022) 82 pp. 4548- [ DOI: doi:10.1016/j.molcel.2022.10.008 Pubmed: 36309015 ]
- Glutamate receptor ionotropic, nmda 2c (96 kDa, Protein from Homo sapiens)
- Hetero-tetrameric glun1a-glun2c nmda receptors (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Glutamate receptor ionotropic, nmda 1 (95 kDa, Protein from Homo sapiens)
PYD-106-bound Human GluN1a-GluN2C NMDA receptor in intact conformation
Resolution: 3.72 Å
EM Method: Single-particle
Fitted PDBs: 8e94
Q-score: 0.47
Chou TH, Kang H, Simorowski N, Traynelis SF, Furukawa H
Mol Cell (2022) 82 pp. 4548- [ DOI: doi:10.1016/j.molcel.2022.10.008 Pubmed: 36309015 ]
- Methyl 4-[(2~{r})-3-ethanoyl-1-[2-(2-methyl-1~{h}-indol-3-yl)ethyl]-4-oxidanyl-5-oxidanylidene-2~{h}-pyrrol-2-yl]benzoate (432 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Glutamate receptor ionotropic, nmda 2c (96 kDa, Protein from Homo sapiens)
- Glutamate receptor ionotropic, nmda 1 (95 kDa, Protein from Homo sapiens)
- Hetero-tetrameric glun1a-glun2c nmda receptors (Complex from Homo sapiens)
S-(+)-ketamine bound GluN1a-GluN2B NMDA receptors at 3.69 Angstrom resolution
Resolution: 3.69 Å
EM Method: Single-particle
Fitted PDBs: 7sac
Q-score: 0.419
Chou TH, Epstein M, Michalski K, Fine E, Biggin PC, Furukawa H
Nat Struct Mol Biol (2022) 29 pp. 507-518 [ Pubmed: 35637422 DOI: doi:10.1038/s41594-022-00772-0 ]
- Glutamate receptor ionotropic, nmda 2b (98 kDa, Protein from Rattus norvegicus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- (2~{s})-2-(2-chlorophenyl)-2-(methylamino)cyclohexan-1-one (237 Da, Ligand)
- Glutamate receptor ionotropic, nmda 1 (95 kDa, Protein from Rattus norvegicus)
- Glutamic acid (147 Da, Ligand)
- Glycine (75 Da, Ligand)
- Hetero-tetrameric glun1a-glun2b nmda receptors (Complex from Rattus norvegicus)
Memantine-bound GluN1a-GluN2B NMDA receptors
Resolution: 3.96 Å
EM Method: Single-particle
Fitted PDBs: 7sad
Q-score: 0.376
Chou TH, Epstein M, Michalski K, Fine E, Biggin PC, Furukawa H
Nat Struct Mol Biol (2022) 29 pp. 507-518 [ Pubmed: 35637422 DOI: doi:10.1038/s41594-022-00772-0 ]
- Glutamate receptor ionotropic, nmda 2b (98 kDa, Protein from Rattus norvegicus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Glutamate receptor ionotropic, nmda 1 (95 kDa, Protein from Rattus norvegicus)
- Memantine (179 Da, Ligand)
- Hetero-tetrameric glun1a-glun2b nmda receptors (Complex from Rattus norvegicus)
Structure of human TRPA1 in complex with antagonist compound 21
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 7jup
Q-score: 0.522
Terrett JA, Chen H, Shore DG, Villemure E, Larouche-Gauthier R, Dery M, Beaumier F, Constantineau-Forget L, Grand-Maitre C, Lepissier L, Ciblat S, Sturino C, Chen Y, Hu B, Lu A, Wang Y, Cridland AP, Ward SI, Hackos DH, Reese RM, Shields SD, Chen J, Balestrini A, Riol-Blanco L, Lee WP, Liu J, Suto E, Wu X, Zhang J, Ly JQ, La H, Johnson K, Baumgardner M, Chou KJ, Rohou A, Rouge L, Safina BS, Magnuson S, Volgraf M
J Med Chem (2021) 64 pp. 3843-3869 [ Pubmed: 33749283 DOI: doi:10.1021/acs.jmedchem.0c02023 ]
GluN1b-GluN2B NMDA receptor in non-active 2 conformation at 4 angstrom resolution
Resolution: 3.99 Å
EM Method: Single-particle
Fitted PDBs: 6whr
Q-score: 0.411
Chou TH, Tajima N, Romero-Hernandez A, Furukawa H
Cell (2020) 182 pp. 357-371.e13 [ DOI: doi:10.1016/j.cell.2020.05.052 Pubmed: 32610085 ]
- Glutamate receptor ionotropic, nmda 2b (98 kDa, Protein from Rattus norvegicus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Glutamate receptor ionotropic, nmda 1 (108 kDa, Protein from Rattus norvegicus)
- Nmda receptor glun1b/2b functional ion channel complex (Complex from Rattus norvegicus)
GluN1b-GluN2B NMDA receptor in complex with SDZ 220-040 and L689,560, class 1
Resolution: 3.93 Å
EM Method: Single-particle
Fitted PDBs: 6whu
Q-score: 0.42
Chou TH, Tajima N, Romero-Hernandez A, Furukawa H
Cell (2020) 182 pp. 357-371.e13 [ DOI: doi:10.1016/j.cell.2020.05.052 Pubmed: 32610085 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- (2s)-2-amino-3-[2',4'-dichloro-4-hydroxy-5-(phosphonomethyl)biphenyl-3-yl]propanoic acid (420 Da, Ligand)
- (2r,4s)-5,7-dichloro-4-[(phenylcarbamoyl)amino]-1,2,3,4-tetrahydroquinoline-2-carboxylic acid (380 Da, Ligand)
- Glutamate receptor ionotropic, nmda 1 (108 kDa, Protein from Rattus norvegicus)
- Glutamate receptor ionotropic, nmda 2b (98 kDa, Protein from Rattus norvegicus)
- Nmda receptor glun1b/2b functional ion channel complex (Complex from Rattus norvegicus)
Resolution: 3.62 Å
EM Method: Single-particle
Fitted PDBs: 6wi1
Q-score: 0.404
Chou TH, Tajima N, Romero-Hernandez A, Furukawa H
Cell (2020) 182 pp. 357-371.e13 [ DOI: doi:10.1016/j.cell.2020.05.052 Pubmed: 32610085 ]
- Ionotropic glutamate receptor , nmda receptor glun1b (97 kDa, Protein from Rattus norvegicus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Ionotropic glutamate receptor , nmda receptor glun2b (98 kDa, Protein from Rattus norvegicus)
- Nmda receptor glun1b/2b functional ion channel complex (Complex from Rattus norvegicus)