80S ribosome from mouse bound to eEF2 (Class II)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7ls1
Q-score: 0.374
Smith PR, Loerch S, Kunder N, Stanowick AD, Lou TF, Campbell ZT
Nat Commun (2021) 12 pp. 6789-6789 [ DOI: doi:10.1038/s41467-021-27160-4 Pubmed: 34815424 ]
- 60s ribosomal protein l39 (6 kDa, Protein from Mouse)
- 60s ribosomal protein l21 (18 kDa, Protein from Mouse)
- 60s ribosomal protein l7a (30 kDa, Protein from Mouse)
- 28s rrna (603 kDa, RNA from Mus musculus)
- 60s ribosomal protein l26 (17 kDa, Protein from Mouse)
- 40s ribosomal protein s16 (16 kDa, Protein from Mouse)
- 60s ribosomal protein l23a (17 kDa, Protein from Mouse)
- 60s ribosomal protein l6 (33 kDa, Protein from Mouse)
- 60s ribosomal protein l41 (3 kDa, Protein from Mouse)
- 80s ribosome from mous ebound to eef2 (4 MDa, Complex from Mus musculus)
- 60s ribosomal protein l35 (14 kDa, Protein from Mouse)
- 40s ribosomal protein s10 (18 kDa, Protein from Mouse)
- 60s ribosomal protein l11 (20 kDa, Protein from Mouse)
- 60s ribosomal protein l36a (12 kDa, Protein from Mouse)
- 60s ribosomal protein l28 (15 kDa, Protein from Mouse)
- 40s ribosomal protein sa (32 kDa, Protein from Mouse)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Mouse)
- 40s ribosomal protein s9 (22 kDa, Protein from Mouse)
- 40s ribosomal protein s8 (24 kDa, Protein from Mouse)
- Water (18 Da, Ligand)
- 60s ribosomal protein l23 (14 kDa, Protein from Mouse)
- 60s ribosomal protein l37a (10 kDa, Protein from Mouse)
- 40s ribosomal protein s2 (31 kDa, Protein from Mouse)
- 60s ribosomal protein l32 (15 kDa, Protein from Mouse)
- 40s ribosomal protein s3a (29 kDa, Protein from Mouse)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s12 (14 kDa, Protein from Mouse)
- 40s ribosomal protein s13 (17 kDa, Protein from Mouse)
- 40s ribosomal protein s30 (14 kDa, Protein from Mouse)
- 60s ribosomal protein l18 (21 kDa, Protein from Mouse)
- 60s ribosomal protein l15 (24 kDa, Protein from Mouse)
- 60s ribosomal protein l5 (34 kDa, Protein from Mouse)
- 60s ribosomal protein l17 (21 kDa, Protein from Mouse)
- 60s ribosomal protein l14 (23 kDa, Protein from Mouse)
- 60s ribosomal protein l12 (17 kDa, Protein from Mouse)
- 60s ribosomal protein l7 (31 kDa, Protein from Mouse)
- 60s ribosomal protein l27 (15 kDa, Protein from Mouse)
- 40s ribosomal protein s24 (15 kDa, Protein from Mouse)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Mouse)
- 60s ribosomal protein l9 (21 kDa, Protein from Mouse)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Mouse)
- 60s ribosomal protein l22 (14 kDa, Protein from Mouse)
- Trna (24 kDa, RNA from Mus musculus)
- 60s ribosomal protein l10-like (24 kDa, Protein from Mouse)
- 40s ribosomal protein s17 (15 kDa, Protein from Mouse)
- Elongation factor 2 (95 kDa, Protein from Mouse)
- 60s acidic ribosomal protein p0 (34 kDa, Protein from Mouse)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- 40s ribosomal protein s28 (7 kDa, Protein from Mouse)
- 5s rrna (38 kDa, RNA from Mus musculus)
- 28s rrna (1 MDa, RNA from Mus musculus)
- 40s ribosomal protein s27-like (9 kDa, Protein from Mouse)
- 60s ribosomal protein l3 (46 kDa, Protein from Mouse)
- 40s ribosomal protein s6 (28 kDa, Protein from Mouse)
- 60s ribosomal protein l18a (20 kDa, Protein from Mouse)
- Ubiquitin-40s ribosomal protein s27a (17 kDa, Protein from Mouse)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein s20 (13 kDa, Protein from Mouse)
- 60s ribosomal protein l35a (12 kDa, Protein from Mouse)
- 60s ribosomal protein l38 (8 kDa, Protein from Mouse)
- 40s ribosomal protein s23 (15 kDa, Protein from Mouse)
- 40s ribosomal protein s18 (17 kDa, Protein from Mouse)
- 60s ribosomal protein l37 (11 kDa, Protein from Mouse)
- 60s ribosomal protein l8 (28 kDa, Protein from Mouse)
- 60s ribosomal protein l31 (14 kDa, Protein from Mouse)
- 40s ribosomal protein s21 (9 kDa, Protein from Mouse)
- 40s ribosomal protein s26 (13 kDa, Protein from Mouse)
- 40s ribosomal protein s3 (26 kDa, Protein from Mouse)
- 40s ribosomal protein s15a (14 kDa, Protein from Mouse)
- 60s ribosomal protein l24 (17 kDa, Protein from Mouse)
- 60s ribosomal protein l13 (24 kDa, Protein from Mouse)
- 60s ribosomal protein l10a (24 kDa, Protein from Mouse)
- 40s ribosomal protein s15 (17 kDa, Protein from Mouse)
- 60s ribosomal protein l34 (13 kDa, Protein from Mouse)
- 40s ribosomal protein s14 (16 kDa, Protein from Mouse)
- 40s ribosomal protein s5 (22 kDa, Protein from Mouse)
- 60s ribosomal protein l27a (16 kDa, Protein from Mouse)
- 60s ribosomal protein l19 (23 kDa, Protein from Mouse)
- 60s ribosomal protein l30 (12 kDa, Protein from Mouse)
- 60s ribosomal protein l13a (23 kDa, Protein from Mouse)
- 40s ribosomal protein s19 (16 kDa, Protein from Mouse)
- 40s ribosomal protein s29 (6 kDa, Protein from Mouse)
- 60s ribosomal protein l36 (12 kDa, Protein from Mouse)
- 40s ribosomal protein s7 (22 kDa, Protein from Mouse)
- 40s ribosomal protein s25 (13 kDa, Protein from Mouse)
- 5.8s rrna (55 kDa, RNA from Mus musculus)
- 40s ribosomal protein s11 (18 kDa, Protein from Mouse)
- 60s ribosomal protein l4 (47 kDa, Protein from Mouse)
- 60s ribosomal protein l29 (17 kDa, Protein from Mouse)
- Isoform 3 of plasminogen activator inhibitor 1 rna-binding protein (42 kDa, Protein from Mouse)
80S ribosome from mouse bound to eEF2 (Class I)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7ls2
Q-score: 0.418
Smith PR, Loerch S, Kunder N, Stanowick AD, Lou TF, Campbell ZT
Nat Commun (2021) 12 pp. 6789-6789 [ DOI: doi:10.1038/s41467-021-27160-4 Pubmed: 34815424 ]
- 60s ribosomal protein l36 (12 kDa, Protein from Mus musculus)
- 40s ribosomal protein s2 (31 kDa, Protein from Mus musculus)
- 60s ribosomal protein l29 (17 kDa, Protein from Mus musculus)
- 60s ribosomal protein l7a (30 kDa, Protein from Mus musculus)
- 60s ribosomal protein l12 (17 kDa, Protein from Mus musculus)
- 60s ribosomal protein l22 (14 kDa, Protein from Mus musculus)
- 80s ribosome from mous ebound to eef2 (4 MDa, Complex from Mus musculus)
- 40s ribosomal protein s3a (29 kDa, Protein from Mus musculus)
- 40s ribosomal protein s12 (14 kDa, Protein from Mus musculus)
- 60s ribosomal protein l36a (12 kDa, Protein from Mus musculus)
- 60s ribosomal protein l8 (28 kDa, Protein from Mus musculus)
- 40s ribosomal protein s9 (22 kDa, Protein from Mus musculus)
- 60s ribosomal protein l5 (34 kDa, Protein from Mus musculus)
- 40s ribosomal protein s23 (15 kDa, Protein from Mus musculus)
- 60s ribosomal protein l7 (31 kDa, Protein from Mus musculus)
- Water (18 Da, Ligand)
- 60s ribosomal protein l27a (16 kDa, Protein from Mus musculus)
- 40s ribosomal protein s11 (18 kDa, Protein from Mus musculus)
- 40s ribosomal protein s5 (22 kDa, Protein from Mus musculus)
- 40s ribosomal protein sa (32 kDa, Protein from Mus musculus)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s16 (16 kDa, Protein from Mus musculus)
- 40s ribosomal protein s15a (14 kDa, Protein from Mus musculus)
- 40s ribosomal protein s28 (7 kDa, Protein from Mus musculus)
- 40s ribosomal protein s30 (14 kDa, Protein from Mus musculus)
- 60s ribosomal protein l18a (20 kDa, Protein from Mus musculus)
- 28s rrna (1 MDa, RNA from Mus musculus)
- 40s ribosomal protein s7 (22 kDa, Protein from Mus musculus)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Mus musculus)
- 60s ribosomal protein l38 (8 kDa, Protein from Mus musculus)
- 60s ribosomal protein l26 (17 kDa, Protein from Mus musculus)
- 40s ribosomal protein s18 (17 kDa, Protein from Mus musculus)
- 60s ribosomal protein l14 (23 kDa, Protein from Mus musculus)
- 60s ribosomal protein l19 (23 kDa, Protein from Mus musculus)
- Ubiquitin-40s ribosomal protein s27a (17 kDa, Protein from Mus musculus)
- 60s ribosomal protein l11 (20 kDa, Protein from Mus musculus)
- 40s ribosomal protein s26 (13 kDa, Protein from Mus musculus)
- 60s ribosomal protein l10a (24 kDa, Protein from Mus musculus)
- Trna (24 kDa, RNA from Mus musculus)
- 60s ribosomal protein l32 (15 kDa, Protein from Mus musculus)
- 60s ribosomal protein l10-like (24 kDa, Protein from Mus musculus)
- 60s ribosomal protein l9 (21 kDa, Protein from Mus musculus)
- 60s ribosomal protein l35a (12 kDa, Protein from Mus musculus)
- 60s ribosomal protein l21 (18 kDa, Protein from Mus musculus)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- 40s ribosomal protein s25 (13 kDa, Protein from Mus musculus)
- 40s ribosomal protein s3 (26 kDa, Protein from Mus musculus)
- 5s rrna (38 kDa, RNA from Mus musculus)
- 40s ribosomal protein s15 (17 kDa, Protein from Mus musculus)
- 40s ribosomal protein s8 (24 kDa, Protein from Mus musculus)
- 40s ribosomal protein s27-like (9 kDa, Protein from Mus musculus)
- 60s ribosomal protein l3 (46 kDa, Protein from Mus musculus)
- 60s ribosomal protein l6 (33 kDa, Protein from Mus musculus)
- 40s ribosomal protein s19 (16 kDa, Protein from Mus musculus)
- 40s ribosomal protein s14 (16 kDa, Protein from Mus musculus)
- 60s acidic ribosomal protein p0 (34 kDa, Protein from Mus musculus)
- 60s ribosomal protein l18 (21 kDa, Protein from Mus musculus)
- 60s ribosomal protein l34 (13 kDa, Protein from Mus musculus)
- 40s ribosomal protein s24 (15 kDa, Protein from Mus musculus)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein s6 (28 kDa, Protein from Mus musculus)
- 60s ribosomal protein l24 (17 kDa, Protein from Mus musculus)
- 60s ribosomal protein l31 (14 kDa, Protein from Mus musculus)
- 40s ribosomal protein s17 (15 kDa, Protein from Mus musculus)
- 60s ribosomal protein l35 (14 kDa, Protein from Mus musculus)
- 60s ribosomal protein l4 (47 kDa, Protein from Mus musculus)
- 60s ribosomal protein l37 (11 kDa, Protein from Mus musculus)
- 18s rrna (603 kDa, RNA from Mus musculus)
- 40s ribosomal protein s13 (17 kDa, Protein from Mus musculus)
- 60s ribosomal protein l30 (12 kDa, Protein from Mus musculus)
- 40s ribosomal protein s21 (9 kDa, Protein from Mus musculus)
- 60s ribosomal protein l28 (15 kDa, Protein from Mus musculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Mus musculus)
- 60s ribosomal protein l37a (10 kDa, Protein from Mus musculus)
- 40s ribosomal protein s29 (6 kDa, Protein from Mus musculus)
- 60s ribosomal protein l23a (17 kDa, Protein from Mus musculus)
- 40s ribosomal protein s20 (13 kDa, Protein from Mus musculus)
- 5.8s rrna (50 kDa, RNA from Mus musculus)
- 60s ribosomal protein l13a (23 kDa, Protein from Mus musculus)
- 60s ribosomal protein l17 (21 kDa, Protein from Mus musculus)
- Isoform 3 of plasminogen activator inhibitor 1 rna-binding protein (42 kDa, Protein from Mus musculus)
- 40s ribosomal protein s10 (18 kDa, Protein from Mus musculus)
- 60s ribosomal protein l39 (6 kDa, Protein from Mus musculus)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Mus musculus)
- 60s ribosomal protein l23 (14 kDa, Protein from Mus musculus)
- 60s ribosomal protein l15 (24 kDa, Protein from Mus musculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Mus musculus)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Mus musculus)
- Elongation factor 2 (95 kDa, Protein from Mus musculus)
- 60s ribosomal protein l13 (24 kDa, Protein from Mus musculus)
Cryo-EM of the SLFN12-PDE3A complex: PDE3A body refinement
Resolution: 2.97 Å
EM Method: Single-particle
Fitted PDBs: 7lrc
Q-score: 0.437
Garvie CW, Wu X, Papanastasiou M, Lee S, Fuller J, Schnitzler GR, Horner SW, Baker A, Zhang T, Mullahoo JP, Westlake L, Hoyt SH, Toetzl M, Ranaghan MJ, de Waal L, McGaunn J, Kaplan B, Piccioni F, Yang X, Lange M, Tersteegen A, Raymond D, Lewis TA, Carr SA, Cherniack AD, Lemke CT, Meyerson M, Greulich H
Nat Commun (2021) 12 pp. 4375-4375 [ Pubmed: 34272366 DOI: doi:10.1038/s41467-021-24495-w ]
- Cgmp-inhibited 3',5'-cyclic phosphodiesterase a (57 kDa, Protein from Homo sapiens)
- Schlafen family member 12 (67 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Manganese (ii) ion (54 Da, Ligand)
- (4~{r})-3-[4-(diethylamino)-3-[oxidanyl(oxidanylidene)-$l^{4}-azanyl]phenyl]-4-methyl-4,5-dihydro-1~{h}-pyridazin-6-one (305 Da, Ligand)
- Slfn12-pde3a complex, pde3a body with interacting peptide from slfn12 (Complex from Homo sapiens)
Cryo-EM of the SLFN12-PDE3A complex: Consensus subset model
Resolution: 3.22 Å
EM Method: Single-particle
Fitted PDBs: 7lrd
Q-score: 0.434
Garvie CW, Wu X, Papanastasiou M, Lee S, Fuller J, Schnitzler GR, Horner SW, Baker A, Zhang T, Mullahoo JP, Westlake L, Hoyt SH, Toetzl M, Ranaghan MJ, de Waal L, McGaunn J, Kaplan B, Piccioni F, Yang X, Lange M, Tersteegen A, Raymond D, Lewis TA, Carr SA, Cherniack AD, Lemke CT, Meyerson M, Greulich H
Nat Commun (2021) 12 pp. 4375-4375 [ Pubmed: 34272366 DOI: doi:10.1038/s41467-021-24495-w ]
- Slfn12-pde3a complex, consensus subset model (Complex from Homo sapiens)
- Cgmp-inhibited 3',5'-cyclic phosphodiesterase a (57 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Schlafen family member 12 (67 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Manganese (ii) ion (54 Da, Ligand)
- (4~{r})-3-[4-(diethylamino)-3-[oxidanyl(oxidanylidene)-$l^{4}-azanyl]phenyl]-4-methyl-4,5-dihydro-1~{h}-pyridazin-6-one (305 Da, Ligand)
Cryo-EM of the SLFN12-PDE3A complex: SLFN12 body refinement
Resolution: 2.76 Å
EM Method: Single-particle
Fitted PDBs: 7lre
Q-score: 0.509
Garvie CW, Wu X, Papanastasiou M, Lee S, Fuller J, Schnitzler GR, Horner SW, Baker A, Zhang T, Mullahoo JP, Westlake L, Hoyt SH, Toetzl M, Ranaghan MJ, de Waal L, McGaunn J, Kaplan B, Piccioni F, Yang X, Lange M, Tersteegen A, Raymond D, Lewis TA, Carr SA, Cherniack AD, Lemke CT, Meyerson M, Greulich H
Nat Commun (2021) 12 pp. 4375-4375 [ Pubmed: 34272366 DOI: doi:10.1038/s41467-021-24495-w ]
- Slfn12-pde3a complex, slfn12 body (Complex from Homo sapiens)
- Schlafen family member 12 (67 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
CryoEM structure of the LbCas12a-crRNA-AcrVA4 complex
Resolution: 3.38 Å
EM Method: Single-particle
Fitted PDBs: 6nma
Q-score: 0.489
Zhang H, Li Z, Daczkowski CM, Gabel C, Mesecar AD, Chang L
Cell Host Microbe (2019) 25 pp. 815- [ DOI: doi:10.1016/j.chom.2019.05.004 Pubmed: 31155345 ]
- Protein complex 4 (Complex from Lachnospiraceae bacterium ND2006)
- Acrva1 (27 kDa, Protein from Moraxella bovoculi)
- Magnesium ion (24 Da, Ligand)
- Rna (12 kDa, RNA from Lachnospiraceae bacterium ND2006)
- Cpf1 (143 kDa, Protein from Lachnospiraceae bacterium ND2006)
cryo-EM Structure of the LbCas12a-crRNA-AcrVA1 complex
Resolution: 3.49 Å
EM Method: Single-particle
Fitted PDBs: 6nmd
Q-score: 0.185
Zhang H, Li Z, Daczkowski CM, Gabel C, Mesecar AD, Chang L
Cell Host Microbe (2019) 25 pp. 815- [ DOI: doi:10.1016/j.chom.2019.05.004 Pubmed: 31155345 ]
- Water (18 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Crrna (12 kDa, RNA from Lachnospiraceae bacterium ND2006)
- Acrva1 (20 kDa, Protein from Moraxella bovoculi)
- Cpf1 (143 kDa, Protein from Lachnospiraceae bacterium ND2006)
- Protein complex 2 (Complex from Lachnospiraceae bacterium ND2006)
CryoEM structure of the LbCas12a-crRNA-AcrVA4 dimer
Resolution: 3.38 Å
EM Method: Single-particle
Fitted PDBs: 6nm9
Q-score: 0.411
Zhang H, Li Z, Daczkowski CM, Gabel C, Mesecar AD, Chang L
Cell Host Microbe (2019) 25 pp. 815- [ DOI: doi:10.1016/j.chom.2019.05.004 Pubmed: 31155345 ]
- Rna (25-mer) (12 kDa, RNA from Lachnospiraceae bacterium ND2006)
- Acrva4 (27 kDa, Protein from Moraxella bovoculi)
- Protein complex 5 (Complex from Lachnospiraceae bacterium ND2006)
- Magnesium ion (24 Da, Ligand)
- Cpf1 (143 kDa, Protein from Lachnospiraceae bacterium ND2006)