Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 7u94
Q-score: 0.534
Mietzsch M, Hull JA, Makal VE, Jimenez Ybargollin A, Yu JC, McKissock K, Bennett A, Penzes J, Lins-Austin B, Yu Q, Chipman P, Bhattacharya N, Sousa D, Strugatsky D, Tijssen P, McKenna R, Agbandje-McKenna M
J Virol (2022) 96 pp. e0033522-e0033522 [ Pubmed: 35532224 DOI: doi:10.1128/jvi.00335-22 ]
Cryo-EM structure of AAV True Type
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 7na6
Q-score: 0.531
Bennett A, Hull J, Jolinon N, Tordo J, Moss K, Binns E, Mietzsch M, Hagemann C, Linden RM, Serio A, Chipman P, Sousa D, Broecker F, Seeberger P, Henckaerts E, McKenna R, Agbandje-McKenna M
J Struct Biol (2021) 213 pp. 107795-107795 [ DOI: doi:10.1016/j.jsb.2021.107795 Pubmed: 34509611 ]
- Adeno-associated virus (4 MDa, Virus from Adeno-associated virus)
- Capsid protein vp1 (58 kDa, Protein from Adeno-associated virus)
Cryo-EM of the SLFN12-PDE3A complex: Consensus subset model
Resolution: 3.22 Å
EM Method: Single-particle
Fitted PDBs: 7lrd
Q-score: 0.434
Garvie CW, Wu X, Papanastasiou M, Lee S, Fuller J, Schnitzler GR, Horner SW, Baker A, Zhang T, Mullahoo JP, Westlake L, Hoyt SH, Toetzl M, Ranaghan MJ, de Waal L, McGaunn J, Kaplan B, Piccioni F, Yang X, Lange M, Tersteegen A, Raymond D, Lewis TA, Carr SA, Cherniack AD, Lemke CT, Meyerson M, Greulich H
Nat Commun (2021) 12 pp. 4375-4375 [ Pubmed: 34272366 DOI: doi:10.1038/s41467-021-24495-w ]
- Slfn12-pde3a complex, consensus subset model (Complex from Homo sapiens)
- Cgmp-inhibited 3',5'-cyclic phosphodiesterase a (57 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Schlafen family member 12 (67 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Manganese (ii) ion (54 Da, Ligand)
- (4~{r})-3-[4-(diethylamino)-3-[oxidanyl(oxidanylidene)-$l^{4}-azanyl]phenyl]-4-methyl-4,5-dihydro-1~{h}-pyridazin-6-one (305 Da, Ligand)
Resolution: 2.76 Å
EM Method: Single-particle
Fitted PDBs: 7lnk
Q-score: 0.635
Yu JC, Mietzsch M, Singh A, Jimenez Ybargollin A, Kailasan S, Chipman P, Bhattacharya N, Fakhiri J, Grimm D, Kapoor A, Kucinskaite-Kodze I, Zvirbliene A, Soderlund-Venermo M, McKenna R, Agbandje-McKenna M
Viruses (2021) 13 [ Pubmed: 33672786 DOI: doi:10.3390/v13020330 ]
- Gorilla bocavirus (Virus from Gorilla bocavirus)
- Capsid protein (57 kDa, Protein from Bocavirus gorilla/GBoV1/2009)
Resolution: 2.51 Å
EM Method: Single-particle
Fitted PDBs: 7l0x
Q-score: 0.616
Luo M, Mietzsch M, Chipman P, Song K, Xu C, Spear J, Sousa D, McKenna R, Soderlund-Venermo M, Agbandje-McKenna M
J Virol (2021) 95 [ DOI: doi:10.1128/JVI.02329-20 Pubmed: 33472934 ]
- Human bocavirus 2 (Virus from Human bocavirus 2)
- Vp2 (58 kDa, Protein from Human bocavirus 2)
Resolution: 2.54 Å
EM Method: Single-particle
Fitted PDBs: 7l0y
Q-score: 0.629
Luo M, Mietzsch M, Chipman P, Song K, Xu C, Spear J, Sousa D, McKenna R, Soderlund-Venermo M, Agbandje-McKenna M
J Virol (2021) 95 [ DOI: doi:10.1128/JVI.02329-20 Pubmed: 33472934 ]
- Human bocavirus 1 (Virus from Human bocavirus 1)
- Vp2 (58 kDa, Protein from Primate bocaparvovirus 1 (strain Human bocavirus 1 type 1))
Resolution: 3.07 Å
EM Method: Single-particle
Fitted PDBs: 6shb
Q-score: 0.442
Sofos N, Feng M, Stella S, Pape T, Fuglsang A, Lin J, Huang Q, Li Y, She Q, Montoya G
Mol Cell (2020) 79 pp. 741-757.e7 [ DOI: doi:10.1016/j.molcel.2020.07.008 Pubmed: 32730741 ]
- Crispr-associated protein, cmr3 family (Complex from Sulfolobus islandicus REY15A)
- Crispr-associated ramp protein, cmr4 family (32 kDa, Protein from Sulfolobus islandicus REY15A)
- Cmr1,crispr-associated ramp protein, cmr1 family (55 kDa, Protein from Sulfolobus islandicus REY15A)
- Crispr-associated protein, cmr2 family (Complex from Sulfolobus islandicus REY15A)
- Crispr-associated protein cmrx (Complex from Sulfolobus islandicus REY15A)
- Cmr1,crispr-associated ramp protein, cmr1 family (Complex from Sulfolobus islandicus REY15A)
- Manganese (ii) ion (54 Da, Ligand)
- Crrna (49-mer) (Complex from Sulfolobus islandicus REY15A)
- Cognate target rna (43-mer) (Complex from synthetic construct)
- Crispr-associated protein cmrx (19 kDa, Protein from Sulfolobus islandicus REY15A)
- Crrna (49-mer) (16 kDa, RNA from Sulfolobus islandicus REY15A)
- Cognate target rna (43-mer) (14 kDa, RNA from synthetic construct)
- Type iii-b cmr-beta ternary complex, cognate target rna and amppnp bound, in the presence of ssdna (900 kDa, Complex)
- Crispr-associated protein, cmr5 family (Complex from Sulfolobus islandicus REY15A)
- Crispr-associated ramp protein, cmr6 family (33 kDa, Protein from Sulfolobus islandicus REY15A)
- Crispr-associated protein, cmr3 family (36 kDa, Protein from Sulfolobus islandicus REY15A)
- Crispr-associated protein, cmr2 family (120 kDa, Protein from Sulfolobus islandicus REY15A)
- Crispr-associated protein, cmr5 family (17 kDa, Protein from Sulfolobus islandicus REY15A)
- Zinc ion (65 Da, Ligand)
- Crispr-associated ramp protein, cmr6 family (Complex from Sulfolobus islandicus REY15A)
- Crispr-associated ramp protein, cmr4 family (Complex from Sulfolobus islandicus REY15A)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
The Cutavirus (CuV) capsid structure
Resolution: 2.87 Å
EM Method: Single-particle
Fitted PDBs: 6x2i
Q-score: 0.612
Mietzsch M, McKenna R, Vaisanen E, Yu JC, Ilyas M, Hull JA, Kurian J, Smith JK, Chipman P, Lasanajak Y, Smith D, Soderlund-Venermo M, Agbandje-McKenna M
Viruses (2020) 12 [ Pubmed: 32560452 DOI: doi:10.3390/v12060653 ]
The Tusavirus (TuV) capsid structure
Resolution: 2.88 Å
EM Method: Single-particle
Fitted PDBs: 6x2k
Q-score: 0.596
Mietzsch M, McKenna R, Vaisanen E, Yu JC, Ilyas M, Hull JA, Kurian J, Smith JK, Chipman P, Lasanajak Y, Smith D, Soderlund-Venermo M, Agbandje-McKenna M
Viruses (2020) 12 [ Pubmed: 32560452 DOI: doi:10.3390/v12060653 ]
- Vp2 (61 kDa, Protein from Tusavirus 1)
- Tusavirus 1 (Virus from Tusavirus 1)
Resolution: 3.03 Å
EM Method: Single-particle
Fitted PDBs: 6wfu
Q-score: 0.574
Mietzsch M, Li Y, Kurian J, Smith JK, Chipman P, McKenna R, Yang L, Agbandje-McKenna M
J Struct Biol (2020) 211 pp. 107547-107547 [ Pubmed: 32522552 DOI: doi:10.1016/j.jsb.2020.107547 ]
- Adeno-associated virus (Virus from Adeno-associated virus)
- Vp1 capsid (57 kDa, Protein from Bat adeno-associated virus)