Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 7u94
Q-score: 0.534
Mietzsch M, Hull JA, Makal VE, Jimenez Ybargollin A, Yu JC, McKissock K, Bennett A, Penzes J, Lins-Austin B, Yu Q, Chipman P, Bhattacharya N, Sousa D, Strugatsky D, Tijssen P, McKenna R, Agbandje-McKenna M
J Virol (2022) 96 pp. e0033522-e0033522 [ DOI: doi:10.1128/jvi.00335-22 Pubmed: 35532224 ]
Cryo-EM structure of AAV True Type
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 7na6
Q-score: 0.531
Bennett A, Hull J, Jolinon N, Tordo J, Moss K, Binns E, Mietzsch M, Hagemann C, Linden RM, Serio A, Chipman P, Sousa D, Broecker F, Seeberger P, Henckaerts E, McKenna R, Agbandje-McKenna M
J Struct Biol (2021) 213 pp. 107795-107795 [ DOI: doi:10.1016/j.jsb.2021.107795 Pubmed: 34509611 ]
- Capsid protein vp1 (58 kDa, Protein from Adeno-associated virus)
- Adeno-associated virus (4 MDa, Virus from Adeno-associated virus)
Cryo-EM of the SLFN12-PDE3A complex: Consensus subset model
Resolution: 3.22 Å
EM Method: Single-particle
Fitted PDBs: 7lrd
Q-score: 0.434
Garvie CW, Wu X, Papanastasiou M, Lee S, Fuller J, Schnitzler GR, Horner SW, Baker A, Zhang T, Mullahoo JP, Westlake L, Hoyt SH, Toetzl M, Ranaghan MJ, de Waal L, McGaunn J, Kaplan B, Piccioni F, Yang X, Lange M, Tersteegen A, Raymond D, Lewis TA, Carr SA, Cherniack AD, Lemke CT, Meyerson M, Greulich H
Nat Commun (2021) 12 pp. 4375-4375 [ DOI: doi:10.1038/s41467-021-24495-w Pubmed: 34272366 ]
- Magnesium ion (24 Da, Ligand)
- Manganese (ii) ion (54 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- (4~{r})-3-[4-(diethylamino)-3-[oxidanyl(oxidanylidene)-$l^{4}-azanyl]phenyl]-4-methyl-4,5-dihydro-1~{h}-pyridazin-6-one (305 Da, Ligand)
- Schlafen family member 12 (67 kDa, Protein from Homo sapiens)
- Slfn12-pde3a complex, consensus subset model (Complex from Homo sapiens)
- Cgmp-inhibited 3',5'-cyclic phosphodiesterase a (57 kDa, Protein from Homo sapiens)
Resolution: 2.76 Å
EM Method: Single-particle
Fitted PDBs: 7lnk
Q-score: 0.635
Yu JC, Mietzsch M, Singh A, Jimenez Ybargollin A, Kailasan S, Chipman P, Bhattacharya N, Fakhiri J, Grimm D, Kapoor A, Kucinskaite-Kodze I, Zvirbliene A, Soderlund-Venermo M, McKenna R, Agbandje-McKenna M
Viruses (2021) 13 [ DOI: doi:10.3390/v13020330 Pubmed: 33672786 ]
- Capsid protein (57 kDa, Protein from Bocavirus gorilla/GBoV1/2009)
- Gorilla bocavirus (Virus from Gorilla bocavirus)
Resolution: 3.07 Å
EM Method: Single-particle
Fitted PDBs: 6shb
Q-score: 0.442
Sofos N, Feng M, Stella S, Pape T, Fuglsang A, Lin J, Huang Q, Li Y, She Q, Montoya G
Mol Cell (2020) 79 pp. 741-757.e7 [ DOI: doi:10.1016/j.molcel.2020.07.008 Pubmed: 32730741 ]
- Cognate target rna (43-mer) (14 kDa, RNA from synthetic construct)
- Crispr-associated protein, cmr5 family (17 kDa, Protein from Sulfolobus islandicus REY15A)
- Cmr1,crispr-associated ramp protein, cmr1 family (Complex from Sulfolobus islandicus REY15A)
- Crispr-associated protein, cmr2 family (Complex from Sulfolobus islandicus REY15A)
- Crispr-associated protein cmrx (Complex from Sulfolobus islandicus REY15A)
- Crispr-associated ramp protein, cmr6 family (Complex from Sulfolobus islandicus REY15A)
- Crispr-associated protein, cmr2 family (120 kDa, Protein from Sulfolobus islandicus REY15A)
- Crispr-associated protein, cmr3 family (Complex from Sulfolobus islandicus REY15A)
- Crispr-associated protein cmrx (19 kDa, Protein from Sulfolobus islandicus REY15A)
- Manganese (ii) ion (54 Da, Ligand)
- Type iii-b cmr-beta ternary complex, cognate target rna and amppnp bound, in the presence of ssdna (900 kDa, Complex)
- Crispr-associated ramp protein, cmr6 family (33 kDa, Protein from Sulfolobus islandicus REY15A)
- Zinc ion (65 Da, Ligand)
- Crispr-associated ramp protein, cmr4 family (32 kDa, Protein from Sulfolobus islandicus REY15A)
- Crrna (49-mer) (16 kDa, RNA from Sulfolobus islandicus REY15A)
- Crispr-associated ramp protein, cmr4 family (Complex from Sulfolobus islandicus REY15A)
- Crispr-associated protein, cmr3 family (36 kDa, Protein from Sulfolobus islandicus REY15A)
- Cmr1,crispr-associated ramp protein, cmr1 family (55 kDa, Protein from Sulfolobus islandicus REY15A)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Cognate target rna (43-mer) (Complex from synthetic construct)
- Crrna (49-mer) (Complex from Sulfolobus islandicus REY15A)
- Crispr-associated protein, cmr5 family (Complex from Sulfolobus islandicus REY15A)