HIV-2 CA hexamer; assembled via liposome templating
Cook M, Freniere C, Wu C, Lozano F, Xiong Y
Cell Rep (2025) 44 pp. 115245-115245 [ DOI: doi:10.1016/j.celrep.2025.115245 Pubmed: 39864060 ]
HIV-2 CA hexamer bound with CPSF6 peptide; assembled via liposome templating
Cook M, Freniere C, Wu C, Lozano F, Xiong Y
Cell Rep (2025) 44 pp. 115245-115245 [ DOI: doi:10.1016/j.celrep.2025.115245 Pubmed: 39864060 ]
- Hiv-2 capsid protein (Complex from Human immunodeficiency virus 2)
- Isoform 2 of cleavage and polyadenylation specificity factor subunit 6 (1 kDa, Protein from Homo sapiens)
- Capsid protein p24 (26 kDa, Protein from Human immunodeficiency virus 2)
- Inositol hexakisphosphate (660 Da, Ligand)
- Hiv-2 capsid protein assembled into a lattice via liposome templating and then bound with cpsf6 peptide. (26 kDa, Complex)
- Cpsf6 peptide (Complex from Homo sapiens)
HIV-1 Global CA Pentamer Assembled by Liposome Templating on Small Unilamellar Vesicles
Cook M, Freniere C, Wu C, Lozano F, Xiong Y
Cell Rep (2025) 44 pp. 115245-115245 [ DOI: doi:10.1016/j.celrep.2025.115245 Pubmed: 39864060 ]
Structure of the HKU5 RBD bound to the P. abramus ACE2 receptor
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9d32
Q-score: 0.564
Park YJ, Liu C, Lee J, Brown JT, Ma CB, Liu P, Gen R, Xiong Q, Zepeda SK, Stewart C, Addetia A, Craig CJ, Tortorici MA, Alshukairi AN, Starr TN, Yan H, Veesler D
Cell (2025) [ Pubmed: 39922192 DOI: doi:10.1016/j.cell.2024.12.032 ]
- Spike glycoprotein (29 kDa, Protein from Pipistrellus bat coronavirus HKU5)
- Angiotensin-converting enzyme (89 kDa, Protein from Pipistrellus abramus)
- Zinc ion (65 Da, Ligand)
- Hku5 rbd bound to the p. abramus ace2 receptor (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Cas nuclease-CRISPR (cr)RNA ribonucleoprotein (RNP) complex
Wandera KG, Schmelz S, Migur A, Kibe A, Lukat P, Achmedov T, Caliskan N, Blankenfeldt W, Beisel CL
Mol Cell (2025) [ DOI: doi:10.1016/j.molcel.2025.01.020 Pubmed: 39965569 ]
- Phage head-tail adaptor (134 kDa, Protein from Segatella buccae)
- Crrna (25 kDa, RNA from synthetic construct)
- Cas13b (cr)rna complex (Complex from Segatella buccae)
Overall structure of the U11 snRNP
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8r7n
Q-score: 0.306
Zhao J, Peter D, Brandina I, Liu X, Galej WP
Mol Cell (2025) 85 pp. 652- [ Pubmed: 39809272 DOI: doi:10.1016/j.molcel.2024.12.017 ]
- Small nuclear ribonucleoprotein sm d2 (13 kDa, Protein from Homo sapiens)
- U11/u12 small nuclear ribonucleoprotein 48 kda protein (40 kDa, Protein from Homo sapiens)
- Small nuclear ribonucleoprotein g (8 kDa, Protein from Homo sapiens)
- Small nuclear ribonucleoprotein sm d1 (13 kDa, Protein from Homo sapiens)
- U11/u12 small nuclear ribonucleoprotein 35 kda protein (29 kDa, Protein from Homo sapiens)
- Zinc finger matrin-type protein 5 (20 kDa, Protein from Homo sapiens)
- Small nuclear ribonucleoprotein sm d3 (13 kDa, Protein from Homo sapiens)
- U11/u12 small nuclear ribonucleoprotein 25 kda protein (15 kDa, Protein from Homo sapiens)
- Overall structure of the apo-u11 snrnp (300 kDa, Complex from Homo sapiens)
- Small nuclear ribonucleoprotein e (10 kDa, Protein from Homo sapiens)
- Small nuclear ribonucleoprotein-associated proteins b and b' (24 kDa, Protein from Homo sapiens)
- Programmed cell death protein 7 (54 kDa, Protein from Homo sapiens)
- U11 snrna (43 kDa, RNA from Homo sapiens)
- Small nuclear ribonucleoprotein f (9 kDa, Protein from Homo sapiens)
Overall structure of the substrate-bound U11 snRNP
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 9gbw
Q-score: 0.32
Zhao J, Peter D, Brandina I, Liu X, Galej WP
Mol Cell (2025) 85 pp. 652- [ Pubmed: 39809272 DOI: doi:10.1016/j.molcel.2024.12.017 ]
- Small nuclear ribonucleoprotein sm d2 (13 kDa, Protein from Homo sapiens)
- U11/u12 small nuclear ribonucleoprotein 48 kda protein (40 kDa, Protein from Homo sapiens)
- Overall structure of the substrate-bound u11 snrnp (400 kDa, Complex from Homo sapiens)
- P120-5'ss (3 kDa, RNA from Homo sapiens)
- Small nuclear ribonucleoprotein sm d1 (13 kDa, Protein from Homo sapiens)
- U11/u12 small nuclear ribonucleoprotein 35 kda protein (29 kDa, Protein from Homo sapiens)
- Zinc finger matrin-type protein 5 (20 kDa, Protein from Homo sapiens)
- Small nuclear ribonucleoprotein sm d3 (13 kDa, Protein from Homo sapiens)
- Small nuclear ribonucleoprotein g (8 kDa, Protein from Homo sapiens)
- U11/u12 small nuclear ribonucleoprotein 25 kda protein (15 kDa, Protein from Homo sapiens)
- Small nuclear ribonucleoprotein e (10 kDa, Protein from Homo sapiens)
- Small nuclear ribonucleoprotein-associated proteins b and b' (24 kDa, Protein from Homo sapiens)
- Programmed cell death protein 7 (54 kDa, Protein from Homo sapiens)
- U11 snrna (43 kDa, RNA from Homo sapiens)
- Small nuclear ribonucleoprotein f (9 kDa, Protein from Homo sapiens)
5'-lobe of the substrate-bound U11 snRNP
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 9gbz
Q-score: 0.396
Zhao J, Peter D, Brandina I, Liu X, Galej WP
Mol Cell (2025) 85 pp. 652- [ Pubmed: 39809272 DOI: doi:10.1016/j.molcel.2024.12.017 ]
- 5'-lobe of the substrate-bound u11 snrnp (100 kDa, Complex from Homo sapiens)
- P120-5'ss (3 kDa, RNA from Homo sapiens)
- U11/u12 small nuclear ribonucleoprotein 35 kda protein (29 kDa, Protein from Homo sapiens)
- U11/u12 small nuclear ribonucleoprotein 25 kda protein (15 kDa, Protein from Homo sapiens)
- U11 snrna (43 kDa, RNA from Homo sapiens)
3'-lobe of the substrate-bound U11 snRNP
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9gc0
Q-score: 0.393
Zhao J, Peter D, Brandina I, Liu X, Galej WP
Mol Cell (2025) 85 pp. 652- [ Pubmed: 39809272 DOI: doi:10.1016/j.molcel.2024.12.017 ]
- Small nuclear ribonucleoprotein sm d2 (13 kDa, Protein from Homo sapiens)
- U11/u12 small nuclear ribonucleoprotein 48 kda protein (40 kDa, Protein from Homo sapiens)
- Small nuclear ribonucleoprotein g (8 kDa, Protein from Homo sapiens)
- Small nuclear ribonucleoprotein sm d1 (13 kDa, Protein from Homo sapiens)
- Zinc finger matrin-type protein 5 (20 kDa, Protein from Homo sapiens)
- Small nuclear ribonucleoprotein sm d3 (13 kDa, Protein from Homo sapiens)
- Programmed cell death protein 7 (54 kDa, Protein from Homo sapiens)
- Small nuclear ribonucleoprotein e (10 kDa, Protein from Homo sapiens)
- Small nuclear ribonucleoprotein-associated proteins b and b' (24 kDa, Protein from Homo sapiens)
- 3'-lobe of the substrate-bound u11 snrnp (300 kDa, Complex from Homo sapiens)
- U11 snrna (43 kDa, RNA from Homo sapiens)
- Small nuclear ribonucleoprotein f (9 kDa, Protein from Homo sapiens)
Structure of the U11 snRNP C-lobe
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 9gcl
Q-score: 0.413
Zhao J, Peter D, Brandina I, Liu X, Galej WP
Mol Cell (2025) 85 pp. 652- [ Pubmed: 39809272 DOI: doi:10.1016/j.molcel.2024.12.017 ]
- Small nuclear ribonucleoprotein sm d2 (13 kDa, Protein from Homo sapiens)
- U11 snrna (43 kDa, RNA from Homo sapiens)
- U11/u12 small nuclear ribonucleoprotein 48 kda protein (40 kDa, Protein from Homo sapiens)
- Small nuclear ribonucleoprotein g (8 kDa, Protein from Homo sapiens)
- Small nuclear ribonucleoprotein sm d1 (13 kDa, Protein from Homo sapiens)
- Zinc finger matrin-type protein 5 (20 kDa, Protein from Homo sapiens)
- Small nuclear ribonucleoprotein sm d3 (13 kDa, Protein from Homo sapiens)
- Small nuclear ribonucleoprotein e (10 kDa, Protein from Homo sapiens)
- Small nuclear ribonucleoprotein-associated proteins b and b' (24 kDa, Protein from Homo sapiens)
- Structure of the apo-u11 snrnp 3-lobe (300 kDa, Complex from Homo sapiens)
- Small nuclear ribonucleoprotein f (9 kDa, Protein from Homo sapiens)