The cryo-EM map of the core region from the X. laevis NPC CR subunit
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7fik
Q-score: 0.346
Zhu X, Huang G, Zeng C, Zhan X, Liang K, Xu Q, Zhao Y, Wang P, Wang Q, Zhou Q, Tao Q, Liu M, Lei J, Yan C, Shi Y
Science (2022) 376 pp. eabl8280-eabl8280 [ DOI: doi:10.1126/science.abl8280 Pubmed: 35679404 ]
- Nucleoporin nup88a (82 kDa, Protein from Xenopus laevis)
- Nucleoporin seh1-b (39 kDa, Protein from Xenopus laevis)
- Nup155-prov protein (154 kDa, Protein from Xenopus laevis)
- Nup358 complex, clamps (322 kDa, Protein from Xenopus laevis)
- Nup98 (13 kDa, Protein from Xenopus laevis)
- Mgc154553 protein (41 kDa, Protein from Xenopus laevis)
- Protein sec13 homolog (35 kDa, Protein from Xenopus laevis)
- Xenopus laevis nuclear pore complex (npc) (Complex from Xenopus laevis)
- Nuclear pore complex protein nup133 (111 kDa, Protein from Xenopus laevis)
- Mgc83926 protein (36 kDa, Protein from Xenopus laevis)
- Nuclear pore complex protein nup93 (93 kDa, Protein from Xenopus laevis)
- Outer nup133 (127 kDa, Protein from Xenopus laevis)
- Outer nup160 (162 kDa, Protein from Xenopus laevis)
- Nuclear pore complex protein nup85 (75 kDa, Protein from Xenopus laevis)
- Nuclear pore complex protein nup98-nup96 (191 kDa, Protein from Xenopus laevis)
- Nuclear pore complex protein (105 kDa, Protein from Xenopus laevis)
- Mgc83295 protein (227 kDa, Protein from Xenopus laevis)
SARS-CoV-2 Omicron variant spike protein in complex with Fab XGv282
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7we7
Q-score: 0.315
Wang K, Jia Z, Bao L, Wang L, Cao L, Chi H, Hu Y, Li Q, Zhou Y, Jiang Y, Zhu Q, Deng Y, Liu P, Wang N, Wang L, Liu M, Li Y, Zhu B, Fan K, Fu W, Yang P, Pei X, Cui Z, Qin L, Ge P, Wu J, Liu S, Chen Y, Huang W, Wang Q, Qin CF, Wang Y, Qin C, Wang X
Nature (2022) 603 pp. 919-925 [ Pubmed: 35090164 DOI: doi:10.1038/s41586-022-04466-x ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- The light chain of fab 282 (11 kDa, Protein from Homo sapiens)
- Heavy chain of fab 282 (13 kDa, Protein from Homo sapiens)
- Fab 282 (Complex from Homo sapiens)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 omicron mutation spike protein (Complex)
- Sars-cov-2 omicron mutation spike protein in complex with fab 265 (Complex from Homo sapiens)
SARS-CoV-2 Omicron variant spike protein in complex with Fab XGv265
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7we8
Q-score: 0.363
Wang K, Jia Z, Bao L, Wang L, Cao L, Chi H, Hu Y, Li Q, Zhou Y, Jiang Y, Zhu Q, Deng Y, Liu P, Wang N, Wang L, Liu M, Li Y, Zhu B, Fan K, Fu W, Yang P, Pei X, Cui Z, Qin L, Ge P, Wu J, Liu S, Chen Y, Huang W, Wang Q, Qin CF, Wang Y, Qin C, Wang X
Nature (2022) 603 pp. 919-925 [ Pubmed: 35090164 DOI: doi:10.1038/s41586-022-04466-x ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Fab 265 (Complex)
- Sars-cov-2 omicron mutation spike protein in complex with fab 265 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Light chain of fab 265 (11 kDa, Protein from Homo sapiens)
- Sars-cov-2 omicron mutation spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of fab 265 (13 kDa, Protein from Homo sapiens)
SARS-CoV-2 Omicron variant spike protein in complex with Fab XGv289
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7we9
Q-score: 0.349
Wang K, Jia Z, Bao L, Wang L, Cao L, Chi H, Hu Y, Li Q, Zhou Y, Jiang Y, Zhu Q, Deng Y, Liu P, Wang N, Wang L, Liu M, Li Y, Zhu B, Fan K, Fu W, Yang P, Pei X, Cui Z, Qin L, Ge P, Wu J, Liu S, Chen Y, Huang W, Wang Q, Qin CF, Wang Y, Qin C, Wang X
Nature (2022) 603 pp. 919-925 [ Pubmed: 35090164 DOI: doi:10.1038/s41586-022-04466-x ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- The heavy chain of fab xgv289 (13 kDa, Protein from Homo sapiens)
- Fab 289 (Complex)
- Sars-cov-2 omicron mutation spike protein in complex with fab 265 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 omicron mutation spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- The light chain of fab xgv289 (11 kDa, Protein from Homo sapiens)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7wea
Q-score: 0.421
Wang K, Jia Z, Bao L, Wang L, Cao L, Chi H, Hu Y, Li Q, Zhou Y, Jiang Y, Zhu Q, Deng Y, Liu P, Wang N, Wang L, Liu M, Li Y, Zhu B, Fan K, Fu W, Yang P, Pei X, Cui Z, Qin L, Ge P, Wu J, Liu S, Chen Y, Huang W, Wang Q, Qin CF, Wang Y, Qin C, Wang X
Nature (2022) 603 pp. 919-925 [ Pubmed: 35090164 DOI: doi:10.1038/s41586-022-04466-x ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- The heavy chain of fab xgv347 (13 kDa, Protein from Homo sapiens)
- Sars-cov-2 omicron mutation spike protein in complex with fab 265 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- The light chain of fab xgv347 (11 kDa, Protein from Homo sapiens)
- Sars-cov-2 omicron mutation spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Fab xgv347 (Complex)
SARS-CoV-2 Omicron variant spike protein with two XGv347 binding to two open state RBDs
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7web
Q-score: 0.337
Wang K, Jia Z, Bao L, Wang L, Cao L, Chi H, Hu Y, Li Q, Zhou Y, Jiang Y, Zhu Q, Deng Y, Liu P, Wang N, Wang L, Liu M, Li Y, Zhu B, Fan K, Fu W, Yang P, Pei X, Cui Z, Qin L, Ge P, Wu J, Liu S, Chen Y, Huang W, Wang Q, Qin CF, Wang Y, Qin C, Wang X
Nature (2022) 603 pp. 919-925 [ Pubmed: 35090164 DOI: doi:10.1038/s41586-022-04466-x ]
- Fab 347 (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- The heavy chain of fab xgv347 (13 kDa, Protein from Homo sapiens)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- The light chain of fab xgv347 (11 kDa, Protein from Homo sapiens)
- Sars-cov-2 omicron mutation spike protein (Complex)
- Sars-cov-2 omicron mutation spike protein in complex with fab 265 (Complex from Homo sapiens)
SARS-CoV-2 Omicron variant spike protein with three XGv347 Fabs binding to three closed state RBDs
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7wec
Q-score: 0.433
Wang K, Jia Z, Bao L, Wang L, Cao L, Chi H, Hu Y, Li Q, Zhou Y, Jiang Y, Zhu Q, Deng Y, Liu P, Wang N, Wang L, Liu M, Li Y, Zhu B, Fan K, Fu W, Yang P, Pei X, Cui Z, Qin L, Ge P, Wu J, Liu S, Chen Y, Huang W, Wang Q, Qin CF, Wang Y, Qin C, Wang X
Nature (2022) 603 pp. 919-925 [ Pubmed: 35090164 DOI: doi:10.1038/s41586-022-04466-x ]
- Fab 347 (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- The heavy chain of fab xgv347 (13 kDa, Protein from Homo sapiens)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- The light chain of fab xgv347 (11 kDa, Protein from Homo sapiens)
- Sars-cov-2 omicron mutation spike protein (Complex)
- Sars-cov-2 omicron mutation spike protein in complex with fab 265 (Complex from Homo sapiens)
SARS-CoV-2 Omicron variant spike RBD in complex with Fab XGv265
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7wee
Q-score: 0.415
Wang K, Jia Z, Bao L, Wang L, Cao L, Chi H, Hu Y, Li Q, Zhou Y, Jiang Y, Zhu Q, Deng Y, Liu P, Wang N, Wang L, Liu M, Li Y, Zhu B, Fan K, Fu W, Yang P, Pei X, Cui Z, Qin L, Ge P, Wu J, Liu S, Chen Y, Huang W, Wang Q, Qin CF, Wang Y, Qin C, Wang X
Nature (2022) 603 pp. 919-925 [ Pubmed: 35090164 DOI: doi:10.1038/s41586-022-04466-x ]
- Fab 265 (Complex)
- Sars-cov-2 omicron mutation spike protein in complex with fab 265 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 omicron mutation spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- The heavy chain of fab xgv265 (13 kDa, Protein from Homo sapiens)
- The light chain of fab xgv265 (11 kDa, Protein from Homo sapiens)
SARS-CoV-2 Omicron variant spike RBD in complex with Fab XGv289
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7wef
Q-score: 0.46
Wang K, Jia Z, Bao L, Wang L, Cao L, Chi H, Hu Y, Li Q, Zhou Y, Jiang Y, Zhu Q, Deng Y, Liu P, Wang N, Wang L, Liu M, Li Y, Zhu B, Fan K, Fu W, Yang P, Pei X, Cui Z, Qin L, Ge P, Wu J, Liu S, Chen Y, Huang W, Wang Q, Qin CF, Wang Y, Qin C, Wang X
Nature (2022) 603 pp. 919-925 [ Pubmed: 35090164 DOI: doi:10.1038/s41586-022-04466-x ]
- The heavy chain of fab xgv289 (13 kDa, Protein from Homo sapiens)
- Fab 289 (Complex from Homo sapiens)
- Spike protein s1 (22 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 omicron mutation spike protein (Complex)
- Sars-cov-2 omicron mutation spike protein in complex with fab 265 (Complex from Homo sapiens)
- The light chain of fab xgv289 (11 kDa, Protein from Homo sapiens)
SARS-CoV-2 Omicron variant spike RBD in complex with Fab XGv347
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7wed
Q-score: 0.467
Wang K, Jia Z, Bao L, Wang L, Cao L, Chi H, Hu Y, Li Q, Zhou Y, Jiang Y, Zhu Q, Deng Y, Liu P, Wang N, Wang L, Liu M, Li Y, Zhu B, Fan K, Fu W, Yang P, Pei X, Cui Z, Qin L, Ge P, Wu J, Liu S, Chen Y, Huang W, Wang Q, Qin CF, Wang Y, Qin C, Wang X
Nature (2022) 603 pp. 919-925 [ Pubmed: 35090164 DOI: doi:10.1038/s41586-022-04466-x ]
- Sars-cov-2 omicron mutation spike protein (Complex from Homo sapiens)
- Fab 265 (Complex)
- Spike protein s1 (22 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- The heavy chain of fab xgv347 (13 kDa, Protein from Homo sapiens)
- Sars-cov-2 omicron mutation spike protein in complex with fab 265 (Complex from Severe acute respiratory syndrome coronavirus 2)
- The light chain of fab xgv347 (11 kDa, Protein from Homo sapiens)