Resolution: 3.06 Å
EM Method: Single-particle
Fitted PDBs: 8znz
Q-score: 0.547
Xu JG, Chen S, He Y, Zhu X, Wang Y, Ye Z, Zhou JC, Wu X, Zhang L, Ren X, Jia H, Yu H, Wei X, Feng Y, Chen X, Cui X, Pan X, Wang S, Xia S, Shang H, Pu Y, Xu W, Li H, Chen Q, Chen Z, Wang M, Yan X, Shi H, Li M, Xia Y, Bellelli R, Dong S, He J, Huang J, Cai CL, Zhu X, Zhan Y, Wan L
Nat Commun (2024) 15 pp. 10872-10872 [ DOI: doi:10.1038/s41467-024-55207-9 Pubmed: 39738003 ]
- Zinc ion (65 Da, Ligand)
- Hb0038 fab light chain (11 kDa, Protein from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- Hb0038 fab heavy chain (13 kDa, Protein from Homo sapiens)
- Hb0039 fab light chain (11 kDa, Protein from Homo sapiens)
- Sodium ion (22 Da, Ligand)
- Hb0039 fab heavy chain (13 kDa, Protein from Homo sapiens)
- Cd73 complexed with hb0017 antibody coaktail (630 kDa, Complex from Homo sapiens)
- 5'-nucleotidase (58 kDa, Protein from Homo sapiens)
Resolution: 3.04 Å
EM Method: Single-particle
Fitted PDBs: 8yvc
Q-score: 0.533
Wang P, Li J, Li T, Li K, Ng PC, Wang S, Chriscoli V, Basle A, Marles-Wright J, Zhang YZ, Liu LN
Sci Adv (2024) 10 pp. eadr4227-eadr4227 [ Pubmed: 39612341 DOI: doi:10.1126/sciadv.adr4227 ]
- Carboxysomal midi-shell:icosahedral assembly from csos4a/4b/1a/1b/1c/1d and csos2 c-terminal co-expression (t = 19) (Complex from Halothiobacillus neapolitanus)
- Carboxysome assembly protein csos2b (29 kDa, Protein from Halothiobacillus neapolitanus)
- Major carboxysome shell protein csos1a (9 kDa, Protein from Halothiobacillus neapolitanus)
- Carboxysome shell vertex protein csos4a (8 kDa, Protein from Halothiobacillus neapolitanus)
Resolution: 2.75 Å
EM Method: Single-particle
Fitted PDBs: 8yvd
Q-score: 0.606
Wang P, Li J, Li T, Li K, Ng PC, Wang S, Chriscoli V, Basle A, Marles-Wright J, Zhang YZ, Liu LN
Sci Adv (2024) 10 pp. eadr4227-eadr4227 [ Pubmed: 39612341 DOI: doi:10.1126/sciadv.adr4227 ]
- Major carboxysome shell protein csos1a (9 kDa, Protein from Halothiobacillus neapolitanus)
- Carboxysome assembly protein csos2b (29 kDa, Protein from Halothiobacillus neapolitanus)
- Cryo-em structure of carboxysomal midi-shell: icosahedral assembly from csos4a/4b/1a/1b/1c/1d and csos2 c-terminal co-expression (t = 16) (Complex from Halothiobacillus neapolitanus)
- Carboxysome shell vertex protein csos4a (8 kDa, Protein from Halothiobacillus neapolitanus)
Resolution: 2.3 Å
EM Method: Single-particle
Fitted PDBs: 8yve
Q-score: 0.734
Wang P, Li J, Li T, Li K, Ng PC, Wang S, Chriscoli V, Basle A, Marles-Wright J, Zhang YZ, Liu LN
Sci Adv (2024) 10 pp. eadr4227-eadr4227 [ Pubmed: 39612341 DOI: doi:10.1126/sciadv.adr4227 ]
- Carboxysome shell vertex protein csos4a (8 kDa, Protein from Halothiobacillus neapolitanus)
- Carboxysome assembly protein csos2b (29 kDa, Protein from Halothiobacillus neapolitanus)
- Major carboxysome shell protein csos1a (9 kDa, Protein from Halothiobacillus neapolitanus)
- Carboxysomal midi-shell:icosahedral assembly from csos4a/4b/1a/1b/1c/1d and csos2 c-terminal co-expression (t = 9) (Complex from Halothiobacillus neapolitanus)
Resolution: 2.99 Å
EM Method: Single-particle
Fitted PDBs: 8yvf
Q-score: 0.569
Wang P, Li J, Li T, Li K, Ng PC, Wang S, Chriscoli V, Basle A, Marles-Wright J, Zhang YZ, Liu LN
Sci Adv (2024) 10 pp. eadr4227-eadr4227 [ Pubmed: 39612341 DOI: doi:10.1126/sciadv.adr4227 ]
- Major carboxysome shell protein csos1a (9 kDa, Protein from Halothiobacillus neapolitanus)
- Carboxysome assembly protein csos2b (29 kDa, Protein from Halothiobacillus neapolitanus)
- Cryo-em structure of carboxysomal midi-shell: assembly from csos4a/4b/1a/1b/1c/1d and csos2 c-terminal co-expression (t = 9 q=12) (Complex from Halothiobacillus neapolitanus)
- Carboxysome shell vertex protein csos4a (8 kDa, Protein from Halothiobacillus neapolitanus)
Resolution: 2.93 Å
EM Method: Single-particle
Fitted PDBs: 8yvi
Q-score: 0.587
Wang P, Li J, Li T, Li K, Ng PC, Wang S, Chriscoli V, Basle A, Marles-Wright J, Zhang YZ, Liu LN
Sci Adv (2024) 10 pp. eadr4227-eadr4227 [ Pubmed: 39612341 DOI: doi:10.1126/sciadv.adr4227 ]
- Carboxysome assembly protein csos2b (29 kDa, Protein from Halothiobacillus neapolitanus)
- Major carboxysome shell protein csos1a (9 kDa, Protein from Halothiobacillus neapolitanus)
- Carboxysome shell vertex protein csos4a (8 kDa, Protein from Halothiobacillus neapolitanus)
- Cryo-em structure of carboxysomal midi-shell: icosahedral assembly from csos4a/4b/1a/1b/1c/1d and csos2 c-terminal co-expression (t = 13) (Complex from Halothiobacillus neapolitanus)
Cryo-EM Structure of the Arabidopsis thaliana TIC Complex
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 8z9y
Q-score: 0.531
Liang K, Jin Z, Zhan X, Li Y, Xu Q, Xie Y, Yang Y, Wang S, Wu J, Yan Z
Cell (2024) 187 pp. 5651-5664.e18 [ DOI: doi:10.1016/j.cell.2024.08.003 Pubmed: 39197452 ]
- Nucleusenvelope protein (30 kDa, Protein from Arabidopsis thaliana)
- Protein tic 214 (214 kDa, Protein from Arabidopsis thaliana)
- Protein tic 20-i, chloroplastic (31 kDa, Protein from Arabidopsis thaliana)
- Actin t1-like protein (12 kDa, Protein from Arabidopsis thaliana)
- Arabidopsis thaliana tic complex (Complex from Arabidopsis thaliana)
- Protein tic 56, chloroplastic (61 kDa, Protein from Arabidopsis thaliana)
- Protein tic 100 (100 kDa, Protein from Arabidopsis thaliana)
Resolution: 3.01 Å
EM Method: Single-particle
Fitted PDBs: 8v32
Q-score: 0.454
Wang S, Siddique R, Hall MC, Rice PA, Chang L
Cell (2024) 187 pp. 6865-6881.e16 [ DOI: doi:10.1016/j.cell.2024.09.023 Pubmed: 39383864 ]
- Ternary complex of tnsc, tnsd, and dna in type i-b2 crispr-associated transposon system (Complex from Peltigera membranacea)
- Zinc ion (65 Da, Ligand)
- Dna (41-mer) (24 kDa, DNA from Peltigera membranacea)
- Tnsc (43 kDa, Protein from Peltigera membranacea)
- Water (18 Da, Ligand)
- Tnsd (52 kDa, Protein from Peltigera membranacea)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Dna (41-mer) (24 kDa, DNA from Peltigera membranacea)
Resolution: 3.65 Å
EM Method: Single-particle
Fitted PDBs: 9bw1
Q-score: 0.349
Wang S, Siddique R, Hall MC, Rice PA, Chang L
Cell (2024) 187 pp. 6865- [ DOI: doi:10.1016/j.cell.2024.09.023 Pubmed: 39383864 ]
- Trna_le_luego (48 kDa, DNA from Peltigera membranacea)
- Zinc ion (65 Da, Ligand)
- Tnsabcd-dna complex (Complex)
- Target_val (21 kDa, DNA from Peltigera membranacea)
- Tnsc (43 kDa, Protein from Peltigera membranacea)
- Tnsabcd (Complex from Peltigera membranacea)
- Target_downstream (11 kDa, DNA from Peltigera membranacea)
- Tnsd (52 kDa, Protein from Peltigera membranacea)
- Le_polya (26 kDa, DNA from Peltigera membranacea)
- Re_polya (53 kDa, DNA from Peltigera membranacea)
- Dna (Complex from Peltigera membranacea)
- Integrase (103 kDa, Protein from Peltigera membranacea)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Re_target (61 kDa, DNA from Peltigera membranacea)
- Water (18 Da, Ligand)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8qz0
Q-score: 0.293
Jalal ASB, Girvan P, Chua EYD, Liu L, Wang S, McCormack EA, Skehan MT, Knight CL, Rueda DS, Wigley DB
Mol Cell (2024) 84 pp. 3871- [ Pubmed: 39226902 DOI: doi:10.1016/j.molcel.2024.08.015 ]
- Dna (113-mer) (36 kDa, DNA from synthetic construct)
- Histone h4 (11 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna (113-mer) (36 kDa, DNA from synthetic construct)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Histone h2a.z (14 kDa, Protein from Saccharomyces cerevisiae S288C)
- Histone h3 (15 kDa, Protein from Saccharomyces cerevisiae S288C)
- Histone h2a.z-specific chaperone chz1 (17 kDa, Protein from Saccharomyces cerevisiae S288C)
- Swr1-hexasome-dimer complex (Complex from Saccharomyces cerevisiae S288C)
- Actin-like protein arp6 (50 kDa, Protein from Saccharomyces cerevisiae S288C)
- Vacuolar protein sorting-associated protein 71 (32 kDa, Protein from Saccharomyces cerevisiae S288C)
- Ruvb-like protein 2 (51 kDa, Protein from Saccharomyces cerevisiae S288C)
- Histone h2a.1 (14 kDa, Protein from Saccharomyces cerevisiae S288C)
- Vacuolar protein sorting-associated protein 72 (90 kDa, Protein from Saccharomyces cerevisiae S288C)
- Magnesium ion (24 Da, Ligand)
- Helicase swr1 (174 kDa, Protein from Saccharomyces cerevisiae S288C)
- Zinc ion (65 Da, Ligand)
- Histone h2b.1 (14 kDa, Protein from Saccharomyces cerevisiae S288C)
- Histone h2b.1 (14 kDa, Protein from Saccharomyces cerevisiae S288C)
- Ruvb-like protein 1 (50 kDa, Protein from Saccharomyces cerevisiae S288C)
- Beryllium trifluoride ion (66 Da, Ligand)
- Swr1-complex protein 5 (34 kDa, Protein from Saccharomyces cerevisiae S288C)