Cryo-EM structure of ACE2-SIT1 complex with tiagabine
Resolution: 3.34 Å
EM Method: Single-particle
Fitted PDBs: 8wm3
Q-score: 0.366
Broer A, Hu Z, Kukulowicz J, Yadav A, Zhang T, Dai L, Bajda M, Yan R, Broer S
J Biol Chem (2024) 300 pp. 107687-107687 [ Pubmed: 39159813 DOI: doi:10.1016/j.jbc.2024.107687 ]
- Angiotensin-converting enzyme 2 (94 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sodium- and chloride-dependent transporter xtrp3 (68 kDa, Protein from Homo sapiens)
- Tiagabine (375 Da, Ligand)
- Ace2-sit1 compelx with tiagabine (Complex from Homo sapiens)
Resolution: 3.37 Å
EM Method: Single-particle
Fitted PDBs: 7yhs
Q-score: 0.404
Gao Z, Zhang L, Ge Z, Wang H, Yue Y, Jiang Z, Wang X, Xu C, Zhang Y, Yang M, Feng Y
J Biol Chem (2022) 298 pp. 102575-102575 [ Pubmed: 36209819 DOI: doi:10.1016/j.jbc.2022.102575 ]
- Dna (39-mer) (16 kDa, DNA from Pseudomonas aeruginosa)
- Dna (5'-d(p*ap*gp*cp*ap*gp*cp*tp*gp*cp*ap*cp*c)-3') (16 kDa, DNA from Pseudomonas aeruginosa)
- Dna (Complex)
- Csy-acrif4 (Complex from Pseudomonas aeruginosa)
- Csy4 (21 kDa, Protein from Pseudomonas aeruginosa)
- Type i-f crispr-associated protein csy1 (49 kDa, Protein from Pseudomonas aeruginosa)
- Rna (Complex from Pseudomonas aeruginosa)
- Acrif4 (11 kDa, Protein from Pseudomonas aeruginosa)
- Rna (58-mer) (19 kDa, RNA from Pseudomonas aeruginosa)
- Crispr-associated protein csy3 (37 kDa, Protein from Pseudomonas aeruginosa)
- Crispr type i-f/ypest-associated protein csy2 (36 kDa, Protein from Pseudomonas aeruginosa)
- Csy-acrif4-dsdna (Complex from Pseudomonas aeruginosa)
Structure of Arabidopsis thaliana CLCa
Resolution: 2.84 Å
EM Method: Single-particle
Fitted PDBs: 7xa9
Q-score: 0.583
He J, Wang M, Li S, Chen L, Zhang K, She J
J Biol Chem (2023) 299 pp. 102833-102833 [ Pubmed: 36581207 DOI: doi:10.1016/j.jbc.2022.102833 ]
- Atclca (Complex from Arabidopsis thaliana)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Chloride channel protein clc-a (88 kDa, Protein from Arabidopsis thaliana)
- Nitrate ion (62 Da, Ligand)
the apo structure of human mTORC2 complex
Resolution: 3.28 Å
EM Method: Single-particle
Fitted PDBs: 7tzo
Q-score: 0.353
Yu Z, Chen J, Takagi E, Wang F, Saha B, Liu X, Joubert LM, Gleason CE, Jin M, Li C, Nowotny C, Agard D, Cheng Y, Pearce D
J Biol Chem (2022) 298 pp. 102288-102288 [ DOI: doi:10.1016/j.jbc.2022.102288 Pubmed: 35926713 ]
- Serine/threonine-protein kinase mtor (302 kDa, Protein from Homo sapiens)
- Target of rapamycin complex subunit lst8 (37 kDa, Protein from Homo sapiens)
- Target of rapamycin complex 2 subunit mapkap1 (60 kDa, Protein from Homo sapiens)
- Rapamycin-insensitive companion of mtor (193 kDa, Protein from Homo sapiens)
- Apostate of mtorc2 complex, composed of mtor, rictor, mlst8 and msin1 (Complex from Homo sapiens)
Photobacterium phosphoreum fatty acid reductase complex LuxC-LuxE
Resolution: 2.79 Å
EM Method: Single-particle
Fitted PDBs: 7xc6
Q-score: 0.43
Tian Q, Wu J, Xu H, Hu Z, Huo Y, Wang L
J Biol Chem (2022) 298 pp. 102006-102006 [ DOI: doi:10.1016/j.jbc.2022.102006 Pubmed: 35504354 ]
- Luxe (42 kDa, Protein from Photobacterium phosphoreum)
- Long-chain acyl-protein thioester reductase (54 kDa, Protein from Photobacterium phosphoreum)
- Fatty acid reductase complex (Complex from Photobacterium phosphoreum)
The acetogenin-bound complex I of Mus musculus resolved to 3.4 angstroms
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7psa
Q-score: 0.516
Grba DN, Blaza JN, Bridges HR, Agip AA, Yin Z, Murai M, Miyoshi H, Hirst J
J Biol Chem (2022) 298 pp. 101602-101602 [ Pubmed: 35063503 DOI: doi:10.1016/j.jbc.2022.101602 ]
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial (30 kDa, Protein from Mouse)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial (42 kDa, Protein from Mouse)
- Acyl carrier protein, mitochondrial (17 kDa, Protein from Mouse)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial (52 kDa, Protein from Mouse)
- Nadh-ubiquinone oxidoreductase chain 4l (10 kDa, Protein from house mouse)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 (13 kDa, Protein from Mouse)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 (20 kDa, Protein from Mouse)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1 (6 kDa, Protein from Mouse)
- Cardiolipin (1 kDa, Ligand)
- Mitochondrial nadh:ubiquinone oxidoreductase from mus musculus (Complex from Mus musculus)
- Nadh dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial (50 kDa, Protein from Mouse)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 5 (12 kDa, Protein from Mouse)
- Nadh dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial (11 kDa, Protein from Mouse)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial (24 kDa, Protein from Mouse)
- Nadh-ubiquinone oxidoreductase chain 6 (18 kDa, Protein from Mouse)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 (16 kDa, Protein from Mouse)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial (13 kDa, Protein from Mouse)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 (16 kDa, Protein from Mouse)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11 (15 kDa, Protein from Mouse)
- Nadh-ubiquinone oxidoreductase chain 1 (36 kDa, Protein from house mouse)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 (15 kDa, Protein from Mouse)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 (17 kDa, Protein from Mouse)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial (11 kDa, Protein from Mouse)
- Nadh dehydrogenase [ubiquinone] 1 subunit c1, mitochondrial (8 kDa, Protein from Mouse)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial (24 kDa, Protein from Mouse)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial (19 kDa, Protein from Mouse)
- Nadh-ubiquinone oxidoreductase chain 2 (38 kDa, Protein from Mouse)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial (21 kDa, Protein from Mouse)
- Nadh-ubiquinone oxidoreductase chain 5 (68 kDa, Protein from Mouse)
- Nadh dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial (27 kDa, Protein from Mouse)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6 (15 kDa, Protein from Mouse)
- Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate (745 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial (40 kDa, Protein from Mouse)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 (22 kDa, Protein from Mouse)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10 (21 kDa, Protein from Mouse)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial (21 kDa, Protein from Mouse)
- Zinc ion (65 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 (11 kDa, Protein from Mouse)
- 1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 subunit c2 (14 kDa, Protein from house mouse)
- Flavin mononucleotide (456 Da, Ligand)
- Nadh-ubiquinone oxidoreductase 75 kda subunit, mitochondrial (79 kDa, Protein from Mouse)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 (10 kDa, Protein from Mouse)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3 (9 kDa, Protein from Mouse)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 (8 kDa, Protein from Mouse)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 (15 kDa, Protein from Mouse)
- ~{s}-[2-[3-[[(2~{r})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (3~{s})-3-oxidanyltetradecanethioate (584 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial (17 kDa, Protein from Mouse)
- Iron/sulfur cluster (351 Da, Ligand)
- (3~{s},5~{s})-5-methyl-3-[(13~{r})-13-oxidanyl-13-[(2~{r},5~{r})-5-[(2~{r},5~{r})-5-[(1~{r})-1-oxidanylundecyl]oxolan-2-yl]oxolan-2-yl]tridecyl]oxolan-2-one (608 Da, Ligand)
- Nadh-ubiquinone oxidoreductase chain 3 (13 kDa, Protein from house mouse)
- Nadh-ubiquinone oxidoreductase chain 4 (51 kDa, Protein from house mouse)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7 (12 kDa, Protein from Mouse)
Structure of Drosophila melanogaster GlcNAc-1-phosphotransferase
Resolution: 3.53 Å
EM Method: Single-particle
Fitted PDBs: 7dxi
Q-score: 0.486
Du S, Wang G, Zhang Z, Ma C, Gao N, Xiao J
J Biol Chem (2022) 298 pp. 101702-101702 [ Pubmed: 35148990 DOI: doi:10.1016/j.jbc.2022.101702 ]
- Gnpt (Complex from Drosophila melanogaster)
- Fi02838p (67 kDa, Protein from Drosophila melanogaster)
- Calcium ion (40 Da, Ligand)
Activated filamentous SgrAI endonuclease with Ca2+ and intact primary site DNA
Resolution: 2.7 Å
EM Method: Helical reconstruction
Fitted PDBs: 7ss5
Q-score: 0.544
Shan Z, Ghadirian N, Lyumkis D, Horton NC
J Biol Chem (2022) 298 pp. 101760-101760 [ DOI: doi:10.1016/j.jbc.2022.101760 Pubmed: 35202658 ]
- Dna (5'-d(p*gp*gp*tp*cp*tp*tp*cp*ap*cp*ap*cp*cp*gp*gp*tp*gp*tp*gp*ap*ap*gp*ap*cp*c)-3') (12 kDa, DNA from Streptomyces griseus)
- Calcium ion (40 Da, Ligand)
- Sgrair restriction enzyme (39 kDa, Protein from Streptomyces griseus)
- Water (18 Da, Ligand)
- Activated filamentous sgrai endonuclease with ca2+ and intact primary site dna (74 MDa, Complex from Streptomyces griseus)
Structure of an endocytic receptor
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7jpt
Q-score: 0.456
Gully BS, Venugopal H, Fulcher AJ, Fu Z, Li J, Deuss FA, Llerena C, Heath WR, Lahoud MH, Caminschi I, Rossjohn J, Berry R
J Biol Chem (2020) 296 pp. 100127-100127 [ DOI: doi:10.1074/jbc.RA120.016451 Pubmed: 33257321 ]
- Lymphocyte antigen 75, dec205, cd205 (200 kDa, Cellular component from Homo sapiens)
- Lymphocyte antigen 75 (195 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Structure of an endocytic receptor
Resolution: 5.0 Å
EM Method: Single-particle
Fitted PDBs: 7jpu
Q-score: 0.161
Gully BS, Venugopal H, Fulcher AJ, Fu Z, Li J, Deuss FA, Llerena C, Heath WR, Lahoud MH, Caminschi I, Rossjohn J, Berry R
J Biol Chem (2020) 296 pp. 100127-100127 [ DOI: doi:10.1074/jbc.RA120.016451 Pubmed: 33257321 ]
- Lymphocyte antigen 75, dec205, cd205 (200 kDa, Cellular component from Homo sapiens)
- Lymphocyte antigen 75 (198 kDa, Protein from Homo sapiens)