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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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* AND xref_links:"alphafold" AND natural_source_ncbi_code:"197221" AND author_name:"F"

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EMD-31605

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Cryo-EM structure of cyanobacterial photosystem I in the presence of ferredoxin and cytochrome c6

Release date: Sept. 21, 2022
Resolution: 1.97 Å
EM Method: Single-particle
Fitted PDBs: 7fix
Q-score: 0.651

Li J, Hamaoka N, Makino F, Kawamoto A, Lin Y, Rogner M, Nowaczyk MM, Lee YH, Namba K, Gerle C, Kurisu G

Commun Biol (2022) 5 pp. 951-951 [ Pubmed: 36097054 DOI: doi:10.1038/s42003-022-03926-4 ]

Sample:

Phylloquinone (450 Da, Ligand)
Photosystem i p700 chlorophyll a apoprotein a2 (83 kDa, Protein from Thermosynechococcus vestitus BP-1)
Photosystem i reaction center subunit xii (3 kDa, Protein from Thermosynechococcus vestitus BP-1)
Ferredoxin-1 (10 kDa, Protein from Thermosynechococcus vestitus BP-1)
Beta-carotene (536 Da, Ligand)
Photosystem i reaction center subunit viii (4 kDa, Protein from Thermosynechococcus vestitus BP-1)
1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
Cryo-em map of cyanobacterial photosystem i in the presence of ferredoxin and cytochrome c6 (1 MDa, Complex from Thermosynechococcus elongatus BP-1)
Photosystem i reaction center subunit iv (8 kDa, Protein from Thermosynechococcus vestitus BP-1)
Water (18 Da, Ligand)
Ga-substituted ferredoxin (Complex from Thermosynechococcus elongatus BP-1)
Photosystem i trimer (Complex)
Photosystem i reaction center subunit xi (16 kDa, Protein from Thermosynechococcus vestitus BP-1)
Chlorophyll a isomer (893 Da, Ligand)
Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Thermosynechococcus vestitus BP-1)
Photosystem i reaction center subunit ix (4 kDa, Protein from Thermosynechococcus vestitus BP-1)
Photosystem i reaction center subunit ii (15 kDa, Protein from Thermosynechococcus vestitus BP-1)
Calcium ion (40 Da, Ligand)
Photosystem i iron-sulfur center (8 kDa, Protein from Thermosynechococcus vestitus BP-1)
Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
Photosystem i reaction center subunit iii (19 kDa, Protein from Thermosynechococcus vestitus BP-1)
Photosystem i reaction center subunit psak (8 kDa, Protein from Thermosynechococcus vestitus BP-1)
[2ga-2s] cluster (203 Da, Ligand)
Iron/sulfur cluster (351 Da, Ligand)
Chlorophyll a (893 Da, Ligand)
Unknown ligand (40 Da, Ligand)
Photosystem i 4.8k protein (4 kDa, Protein from Thermosynechococcus vestitus BP-1)

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EMD-10557

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Cryo- EM structure of the Thermosynechococcus elongatus photosystem I in the presence of cytochrome c6

Release date: Sept. 16, 2020
Resolution: 2.85 Å
EM Method: Single-particle
Fitted PDBs: 6tra
Q-score: 0.589

Koelsch A, Radon C, Golub M, Baumert A, Burger J, Miehlke T, Lisdat F, Feoktystov A, Pieper J, Zouni A, Wendler P

Curr Opin Struct Biol (2020) 2 pp. 171-179 [ DOI: doi:10.1016/j.crstbi.2020.08.003 ]

Sample:

Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
Photosystem i reaction center subunit iv (8 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
Phylloquinone (450 Da, Ligand)
1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
Photosystem i reaction center subunit xi (16 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
Beta-carotene (536 Da, Ligand)
Photosystem i (1 MDa, Complex from Thermosynechococcus elongatus BP-1)
Photosystem i reaction center subunit xii (3 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
Photosystem i reaction center subunit ii (15 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
Photosystem i reaction center subunit ix (4 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
Water (18 Da, Ligand)
Photosystem i p700 chlorophyll a apoprotein a2 (83 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
Chlorophyll a isomer (893 Da, Ligand)
Photosystem i reaction center subunit iii (15 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
Photosystem i reaction center subunit psak (8 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
Calcium ion (40 Da, Ligand)
Photosystem i reaction center subunit viii (4 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
Photosystem i iron-sulfur center (8 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
Iron/sulfur cluster (351 Da, Ligand)
Chlorophyll a (893 Da, Ligand)
Photosystem i 4.8k protein (4 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))

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EMD-10558

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Cryo- EM structure of the Thermosynechococcus elongatus photosystem I in the presence of cytochrome c6

Release date: Sept. 16, 2020
Resolution: 2.98 Å
EM Method: Single-particle
Fitted PDBs: 6trc
Q-score: 0.549

Koelsch A, Radon C, Golub M, Baumert A, Burger J, Miehlke T, Lisdat F, Feoktystov A, Pieper J, Zouni A, Wendler P

Curr Opin Struct Biol (2020) 2 pp. 171-179 [ DOI: doi:10.1016/j.crstbi.2020.08.003 ]

Sample:

Photosystem i p700 chlorophyll a apoprotein a2 (83 kDa, Protein from Thermosynechococcus elongatus BP-1)
Phylloquinone (450 Da, Ligand)
1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
Photosystem i reaction center subunit psak (8 kDa, Protein from Thermosynechococcus elongatus BP-1)
Photosystem i iron-sulfur center (8 kDa, Protein from Thermosynechococcus elongatus BP-1)
Photosystem i reaction center subunit iii (15 kDa, Protein from Thermosynechococcus elongatus BP-1)
Beta-carotene (536 Da, Ligand)
Photosystem i (1 MDa, Complex from Thermosynechococcus elongatus BP-1)
Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Thermosynechococcus elongatus BP-1)
Photosystem i 4.8k protein (4 kDa, Protein from Thermosynechococcus elongatus BP-1)
1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
Photosystem i reaction center subunit ix (4 kDa, Protein from Thermosynechococcus elongatus BP-1)
Water (18 Da, Ligand)
Photosystem i reaction center subunit ii (15 kDa, Protein from Thermosynechococcus elongatus BP-1)
Chlorophyll a isomer (893 Da, Ligand)
Photosystem i reaction center subunit viii (4 kDa, Protein from Thermosynechococcus elongatus BP-1)
Calcium ion (40 Da, Ligand)
Photosystem i reaction center subunit xi (16 kDa, Protein from Thermosynechococcus elongatus BP-1)
Iron/sulfur cluster (351 Da, Ligand)
Chlorophyll a (893 Da, Ligand)
Photosystem i reaction center subunit iv (8 kDa, Protein from Thermosynechococcus elongatus BP-1)
Photosystem i reaction center subunit xii (3 kDa, Protein from Thermosynechococcus elongatus BP-1)

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EMD-10559

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Cryo- EM structure of the Thermosynechococcus elongatus photosystem I in the presence of cytochrome c6

Release date: Sept. 16, 2020
Resolution: 3.16 Å
EM Method: Single-particle
Fitted PDBs: 6trd
Q-score: 0.45

Koelsch A, Radon C, Golub M, Baumert A, Burger J, Miehlke T, Lisdat F, Feoktystov A, Pieper J, Zouni A, Wendler P

Curr Opin Struct Biol (2020) 2 pp. 171-179 [ DOI: doi:10.1016/j.crstbi.2020.08.003 ]

Sample:

Photosystem i reaction center subunit xii (3 kDa, Protein from Thermosynechococcus elongatus BP-1)
Iron/sulfur cluster (351 Da, Ligand)
Photosystem i p700 chlorophyll a apoprotein a2 (83 kDa, Protein from Thermosynechococcus elongatus BP-1)
Phylloquinone (450 Da, Ligand)
Photosystem i reaction center subunit psak (8 kDa, Protein from Thermosynechococcus elongatus BP-1)
Photosystem i iron-sulfur center (8 kDa, Protein from Thermosynechococcus elongatus BP-1)
Beta-carotene (536 Da, Ligand)
Photosystem i (1 MDa, Complex from Thermosynechococcus elongatus BP-1)
Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Thermosynechococcus elongatus BP-1)
Photosystem i 4.8k protein (4 kDa, Protein from Thermosynechococcus elongatus BP-1)
Photosystem i reaction center subunit iii (15 kDa, Protein from Thermosynechococcus elongatus BP-1)
1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
Photosystem i reaction center subunit ix (4 kDa, Protein from Thermosynechococcus elongatus BP-1)
Water (18 Da, Ligand)
Photosystem i reaction center subunit viii (4 kDa, Protein from Thermosynechococcus elongatus BP-1)
Photosystem i reaction center subunit ii (15 kDa, Protein from Thermosynechococcus elongatus BP-1)
Chlorophyll a isomer (893 Da, Ligand)
1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
Calcium ion (40 Da, Ligand)
Photosystem i reaction center subunit xi (16 kDa, Protein from Thermosynechococcus elongatus BP-1)
Chlorophyll a (893 Da, Ligand)
Photosystem i reaction center subunit iv (8 kDa, Protein from Thermosynechococcus elongatus BP-1)

[Show more]

EMD-9989

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Supercomplex for cylic electron transport in cyanobacteria

Release date: Feb. 12, 2020
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6khi
Q-score: 0.525

Pan X, Cao D, Xie F, Xu F, Su X, Mi H, Zhang X, Li M

Nat Commun (2020) 11 pp. 610-610 [ Pubmed: 32001694 DOI: doi:10.1038/s41467-020-14456-0 ]

Sample:

Nad(p)h-quinone oxidoreductase subunit 4l (11 kDa, Protein from Thermosynechococcus elongatus BP-1)
Fe2/s2 (inorganic) cluster (175 Da, Ligand)
Nad(p)h-quinone oxidoreductase subunit h (45 kDa, Protein from Thermosynechococcus elongatus BP-1)
Nad(p)h-quinone oxidoreductase subunit l (8 kDa, Protein from Thermosynechococcus elongatus BP-1)
1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
Nad(p)h-quinone oxidoreductase subunit 2 (55 kDa, Protein from Thermosynechococcus elongatus BP-1)
Nad(p)h-quinone oxidoreductase subunit 3 (15 kDa, Protein from Thermosynechococcus elongatus BP-1)
Beta-carotene (536 Da, Ligand)
Nadh dehydrogenase subunit 5 (72 kDa, Protein from Thermosynechococcus elongatus BP-1)
Nad(p)h-quinone oxidoreductase subunit k (25 kDa, Protein from Thermosynechococcus elongatus BP-1)
Proton-translocating nadh-quinone dehydrogenase subunit q (4 kDa, Protein from Thermosynechococcus elongatus BP-1)
Nad(p)h-quinone oxidoreductase subunit n (16 kDa, Protein from Thermosynechococcus elongatus BP-1)
1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
Nad(p)h-quinone oxidoreductase subunit 1 (40 kDa, Protein from Thermosynechococcus elongatus BP-1)
Nad(p)h-quinone oxidoreductase subunit o (7 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
Ferredoxin-1 (10 kDa, Protein from Thermosynechococcus elongatus BP-1)
Tlr0472 protein (16 kDa, Protein from Thermosynechococcus elongatus BP-1)
Nad(p)h-quinone oxidoreductase subunit m (12 kDa, Protein from Thermosynechococcus elongatus BP-1)
Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
Nad(p)h-quinone oxidoreductase subunit i (22 kDa, Protein from Thermosynechococcus elongatus BP-1)
Tlr0636 protein (12 kDa, Protein from Thermosynechococcus elongatus BP-1)
Nad(p)h-quinone oxidoreductase subunit j (19 kDa, Protein from Thermosynechococcus elongatus BP-1)
Nadh-quinone oxidoreductase subunit j (21 kDa, Protein from Thermosynechococcus elongatus BP-1)
Iron/sulfur cluster (351 Da, Ligand)
Proton-translocating nadh-quinone dehydrogenase subunit p (4 kDa, Protein from Thermosynechococcus elongatus BP-1)
Nad(p)h-quinone oxidoreductase chain 4 1 (57 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
Electron transport complex ndh-fd from cyanobacteria (Complex from Thermosynechococcus elongatus BP-1)

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EMD-9990

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Supercomplex for electron transfer

Release date: Feb. 12, 2020
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6khj
Q-score: 0.562

Pan X, Cao D, Xie F, Xu F, Su X, Mi H, Zhang X, Li M

Nat Commun (2020) 11 pp. 610-610 [ Pubmed: 32001694 DOI: doi:10.1038/s41467-020-14456-0 ]

Sample:

Nad(p)h-quinone oxidoreductase subunit 4l (11 kDa, Protein from Thermosynechococcus elongatus BP-1)
Cylic electron transfer supercomplex from cyanobacteria (Complex from Thermosynechococcus elongatus BP-1)
Nad(p)h-quinone oxidoreductase subunit h (45 kDa, Protein from Thermosynechococcus elongatus BP-1)
Nad(p)h-quinone oxidoreductase subunit l (8 kDa, Protein from Thermosynechococcus elongatus BP-1)
1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
Nad(p)h-quinone oxidoreductase chain 4 1 (57 kDa, Protein from Thermosynechococcus elongatus BP-1)
Nad(p)h-quinone oxidoreductase subunit 2 (55 kDa, Protein from Thermosynechococcus elongatus BP-1)
2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
Nad(p)h-quinone oxidoreductase subunit 3 (15 kDa, Protein from Thermosynechococcus elongatus BP-1)
Beta-carotene (536 Da, Ligand)
Nadh dehydrogenase subunit 5 (72 kDa, Protein from Thermosynechococcus elongatus BP-1)
Nad(p)h-quinone oxidoreductase subunit k (25 kDa, Protein from Thermosynechococcus elongatus BP-1)
Proton-translocating nadh-quinone dehydrogenase subunit q (4 kDa, Protein from Thermosynechococcus elongatus BP-1)
Nad(p)h-quinone oxidoreductase subunit n (16 kDa, Protein from Thermosynechococcus elongatus BP-1)
1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
Nad(p)h-quinone oxidoreductase subunit 1 (40 kDa, Protein from Thermosynechococcus elongatus BP-1)
1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
Nad(p)h-quinone oxidoreductase subunit o (7 kDa, Protein from Thermosynechococcus elongatus BP-1)
Nad(p)h-quinone oxidoreductase subunit m (12 kDa, Protein from Thermosynechococcus elongatus BP-1)
Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
Nad(p)h-quinone oxidoreductase subunit i (22 kDa, Protein from Thermosynechococcus elongatus BP-1)
Tlr0636 protein (12 kDa, Protein from Thermosynechococcus elongatus BP-1)
Nad(p)h-quinone oxidoreductase subunit j (19 kDa, Protein from Thermosynechococcus elongatus BP-1)
Nadh-quinone oxidoreductase subunit j (21 kDa, Protein from Thermosynechococcus elongatus BP-1)
Iron/sulfur cluster (351 Da, Ligand)
Proton-translocating nadh-quinone dehydrogenase subunit p (4 kDa, Protein from Thermosynechococcus elongatus BP-1)
Dodecyl-beta-d-maltoside (510 Da, Ligand)

[Show more]

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Showing 1 - 6 of 6. Page 1 of 1

Display: Statistics

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Select database:

EMDB [6]

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Select the script type:

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Field: