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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

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perform basic research in molecular biology

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Barcelona

Tissue biology and disease modelling

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Structural biology

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Structural biology

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Epigenetics and neurobiology

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* AND xref_links:"alphafold" AND natural_source_ncbi_code:"3055" AND author_name:"Schwartz T"

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EMD-14248

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Chlamydomonas reinhardtii TSP9 mutant small Photosystem I complex

Release date: Feb. 22, 2023
Resolution: 2.52 Å
EM Method: Single-particle
Fitted PDBs: 7r3k
Q-score: 0.633

Schwartz T, Fadeeva M, Klaiman D, Nelson N

Biomolecules (2023) 13 [ Pubmed: 36979472 DOI: doi:10.3390/biom13030537 ]

Sample:

Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem i reaction center subunit iv, chloroplastic (10 kDa, Protein from Chlamydomonas reinhardtii)
Phylloquinone (450 Da, Ligand)
Photosystem i iron-sulfur center (8 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem i reaction center subunit viii (10 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem i reaction center subunit ix (4 kDa, Protein from Chlamydomonas reinhardtii)
1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
1,2-diacyl-glycerol-3-sn-phosphate (704 Da, Ligand)
Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Chlamydomonas reinhardtii)
C. reinhardtii photosystem i supercomplex (780 kDa, Complex from Chlamydomonas reinhardtii)
Beta-carotene (536 Da, Ligand)
(3r)-beta,beta-caroten-3-ol (552 Da, Ligand)
Photosystem i reaction center subunit psak, chloroplastic (11 kDa, Protein from Chlamydomonas reinhardtii)
Ergosterol (396 Da, Ligand)
Photosystem i reaction center subunit v, chloroplastic (13 kDa, Protein from Chlamydomonas reinhardtii)
Chlorophyll b (907 Da, Ligand)
1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
Lauric acid (200 Da, Ligand)
Water (18 Da, Ligand)
Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from Chlamydomonas reinhardtii)
Palmitic acid (256 Da, Ligand)
Photosystem i reaction center subunit ii, chloroplastic (21 kDa, Protein from Chlamydomonas reinhardtii)
Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Chlamydomonas reinhardtii)
Chlorophyll a isomer (893 Da, Ligand)
Sphingosine (299 Da, Ligand)
1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (32 kDa, Protein from Chlamydomonas reinhardtii)
Diacyl glycerol (625 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas reinhardtii)
Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas reinhardtii)
Chlorophyll a-b binding protein, chloroplastic (lhca4) (28 kDa, Protein from Chlamydomonas reinhardtii)
Calcium ion (40 Da, Ligand)
Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
(3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
(1~{s})-3,5,5-trimethyl-4-[(1~{e},3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(4~{s})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol (568 Da, Ligand)
Iron/sulfur cluster (351 Da, Ligand)
Chlorophyll a (893 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlamydomonas reinhardtii)
Dodecyl-beta-d-maltoside (510 Da, Ligand)
Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Chlamydomonas reinhardtii)

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EMD-12227

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Photosystem I of a temperature sensitive mutant Chlamydomonas reinhardtii

Release date: Dec. 15, 2021
Resolution: 3.15 Å
EM Method: Single-particle
Fitted PDBs: 7blx
Q-score: 0.536

Caspy I, Schwartz T, Bayro-Kaiser V, Fadeeva M, Kessel A, Ben-Tal N, Nelson N

Commun Biol (2021) 4 pp. 1380- [ DOI: doi:10.1038/s42003-021-02911-7 ]

Sample:

Photosystem i p700 chlorophyll a apoprotein a2 (81 kDa, Protein from Chlamydomonas reinhardtii)
Chlorophyll a-b binding protein, chloroplastic (20 kDa, Protein from Chlamydomonas reinhardtii)
Phylloquinone (450 Da, Ligand)
1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
1,2-diacyl-glycerol-3-sn-phosphate (704 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem i iron-sulfur center (8 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem i reaction center subunit v, chloroplastic (9 kDa, Protein from Chlamydomonas reinhardtii)
Chlorophyll a-b binding protein, chloroplastic (24 kDa, Protein from Chlamydomonas reinhardtii)
Beta-carotene (536 Da, Ligand)
(3r)-beta,beta-caroten-3-ol (552 Da, Ligand)
Photosystem i reaction center subunit ix (4 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem i reaction center subunit psak, chloroplastic (8 kDa, Protein from Chlamydomonas reinhardtii)
Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlamydomonas reinhardtii)
Chlorophyll b (907 Da, Ligand)
(2s)-3-{[(r)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate (453 Da, Ligand)
1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
Lauric acid (200 Da, Ligand)
(2r)-2-hydroxy-3-(phosphonooxy)propyl (9e)-octadec-9-enoate (436 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Chlamydomonas reinhardtii)
Water (18 Da, Ligand)
Photosystem i of temperature sensitive chlamydomonas reinhardtii (890 kDa, Complex from Chlamydomonas reinhardtii)
Photosystem i reaction center subunit viii (3 kDa, Protein from Chlamydomonas reinhardtii)
Palmitic acid (256 Da, Ligand)
Photosystem i reaction center subunit iv, chloroplastic (7 kDa, Protein from Chlamydomonas reinhardtii)
(3~{e},5~{e},7~{e})-6-methyl-8-[(6~{r})-2,2,6-trimethylcyclohexyl]octa-3,5,7-trien-2-one (260 Da, Ligand)
Chlorophyll a isomer (893 Da, Ligand)
Sphingosine (299 Da, Ligand)
1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
Photosystem i reaction center subunit iii, chloroplastic (17 kDa, Protein from Chlamydomonas reinhardtii)
Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlamydomonas reinhardtii)
Octanoic acid (caprylic acid) (144 Da, Ligand)
Calcium ion (40 Da, Ligand)
Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
(3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
Psi subunit v (12 kDa, Protein from Chlamydomonas reinhardtii)
(1~{s})-3,5,5-trimethyl-4-[(1~{e},3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(4~{s})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol (568 Da, Ligand)
Photosystem i reaction center subunit ii, chloroplastic (16 kDa, Protein from Chlamydomonas reinhardtii)
Iron/sulfur cluster (351 Da, Ligand)
Chlorophyll a (893 Da, Ligand)
Diacyl glycerol (625 Da, Ligand)
Dodecyl-beta-d-maltoside (510 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlamydomonas reinhardtii)

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EMD-12672

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Dimeric Photosystem I of a temperature sensitive mutant Chlamydomonas reinhardtii

Release date: Dec. 15, 2021
Resolution: 17.1 Å
EM Method: Single-particle
Fitted PDBs: 7o01
Q-score: 0.036

Caspy I, Schwartz T, Bayro-Kaiser V, Fadeeva M, Kessel A, Ben-Tal N, Nelson N

Commun Biol (2021) 4 pp. 1380- [ DOI: doi:10.1038/s42003-021-02911-7 ]

Sample:

Photosystem i p700 chlorophyll a apoprotein a2 (81 kDa, Protein from Chlamydomonas reinhardtii)
Chlorophyll a-b binding protein, chloroplastic (20 kDa, Protein from Chlamydomonas reinhardtii)
Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem i iron-sulfur center (8 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem i reaction center subunit v, chloroplastic (9 kDa, Protein from Chlamydomonas reinhardtii)
Chlorophyll a-b binding protein, chloroplastic (21 kDa, Protein from Chlamydomonas reinhardtii)
Chlorophyll a-b binding protein, chloroplastic (24 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem i reaction center subunit ix (4 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem i reaction center subunit psak, chloroplastic (8 kDa, Protein from Chlamydomonas reinhardtii)
Psi subunit v (14 kDa, Protein from Chlamydomonas reinhardtii)
Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlamydomonas reinhardtii)
Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem i of temperature sensitive chlamydomonas reinhardtii (890 kDa, Complex from Chlamydomonas reinhardtii)
Photosystem i reaction center subunit viii (3 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem i reaction center subunit iv, chloroplastic (7 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem i reaction center subunit iii, chloroplastic (17 kDa, Protein from Chlamydomonas reinhardtii)
Chlorophyll a-b binding protein, chloroplastic (19 kDa, Protein from Chlamydomonas reinhardtii)
Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem i reaction center subunit ii, chloroplastic (16 kDa, Protein from Chlamydomonas reinhardtii)
Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlamydomonas reinhardtii)

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EMD-12180

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Photosystem I of a temperature sensitive mutant Chlamydomonas reinhardtii

Release date: Dec. 8, 2021
Resolution: 2.54 Å
EM Method: Single-particle
Fitted PDBs: 7bgi
Q-score: 0.629

Caspy I, Schwartz T, Bayro-Kaiser V, Fadeeva M, Kessel A, Ben-Tal N, Nelson N

Commun Biol (2021) 4 pp. 1380- [ DOI: doi:10.1038/s42003-021-02911-7 ]

Sample:

Photosystem i p700 chlorophyll a apoprotein a2 (81 kDa, Protein from Chlamydomonas reinhardtii)
Chlorophyll a-b binding protein, chloroplastic (20 kDa, Protein from Chlamydomonas reinhardtii)
Phylloquinone (450 Da, Ligand)
1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
Phosphatidylinositol (887 Da, Ligand)
1,2-diacyl-glycerol-3-sn-phosphate (704 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem i iron-sulfur center (8 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem i reaction center subunit v, chloroplastic (9 kDa, Protein from Chlamydomonas reinhardtii)
Chlorophyll a-b binding protein, chloroplastic (21 kDa, Protein from Chlamydomonas reinhardtii)
Chlorophyll a-b binding protein, chloroplastic (24 kDa, Protein from Chlamydomonas reinhardtii)
Beta-carotene (536 Da, Ligand)
(3r)-beta,beta-caroten-3-ol (552 Da, Ligand)
Photosystem i reaction center subunit ix (4 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem i reaction center subunit psak, chloroplastic (8 kDa, Protein from Chlamydomonas reinhardtii)
Psi subunit v (14 kDa, Protein from Chlamydomonas reinhardtii)
Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlamydomonas reinhardtii)
Chlorophyll b (907 Da, Ligand)
(2s)-3-{[(r)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate (453 Da, Ligand)
1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
Lauric acid (200 Da, Ligand)
(2r)-2-hydroxy-3-(phosphonooxy)propyl (9e)-octadec-9-enoate (436 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Chlamydomonas reinhardtii)
Water (18 Da, Ligand)
Photosystem i of temperature sensitive chlamydomonas reinhardtii (890 kDa, Complex from Chlamydomonas reinhardtii)
Photosystem i reaction center subunit viii (3 kDa, Protein from Chlamydomonas reinhardtii)
Palmitic acid (256 Da, Ligand)
Photosystem i reaction center subunit iv, chloroplastic (7 kDa, Protein from Chlamydomonas reinhardtii)
(3~{e},5~{e},7~{e})-6-methyl-8-[(6~{r})-2,2,6-trimethylcyclohexyl]octa-3,5,7-trien-2-one (260 Da, Ligand)
Chlorophyll a isomer (893 Da, Ligand)
Sphingosine (299 Da, Ligand)
1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
Photosystem i reaction center subunit iii, chloroplastic (17 kDa, Protein from Chlamydomonas reinhardtii)
Chlorophyll a-b binding protein, chloroplastic (19 kDa, Protein from Chlamydomonas reinhardtii)
Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlamydomonas reinhardtii)
Octanoic acid (caprylic acid) (144 Da, Ligand)
Calcium ion (40 Da, Ligand)
Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
(3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
(1~{s})-3,5,5-trimethyl-4-[(1~{e},3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(4~{s})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol (568 Da, Ligand)
Photosystem i reaction center subunit ii, chloroplastic (16 kDa, Protein from Chlamydomonas reinhardtii)
Iron/sulfur cluster (351 Da, Ligand)
Chlorophyll a (893 Da, Ligand)
Diacyl glycerol (625 Da, Ligand)
Dodecyl-beta-d-maltoside (510 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlamydomonas reinhardtii)

[Show more]

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Display: Statistics

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Select database:

EMDB [4]

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