Tetrameric cryo-EM structure of E. coli BcsZ
Resolution: 2.65 Å
EM Method: Single-particle
Fitted PDBs: 9b87
Q-score: 0.449
Verma P, Ho R, Chambers SA, Cegelski L, Zimmer J
Nat Commun (2024) 15 pp. 7798-7798 [ DOI: doi:10.1038/s41467-024-51838-0 Pubmed: 39242554 ]
Cryo-EM structure of E. coli cellulose synthase subunit C
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 9b8a
Q-score: 0.49
Verma P, Ho R, Chambers SA, Cegelski L, Zimmer J
Nat Commun (2024) 15 pp. 7798-7798 [ DOI: doi:10.1038/s41467-024-51838-0 Pubmed: 39242554 ]
Cryo-EM structure of E. coli cellulose synthase subunit C with cellotetraose
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 9b8h
Q-score: 0.414
Verma P, Ho R, Chambers SA, Cegelski L, Zimmer J
Nat Commun (2024) 15 pp. 7798-7798 [ DOI: doi:10.1038/s41467-024-51838-0 Pubmed: 39242554 ]
Cryo-EM structure of the E. coli cellulose synthase BcsB-BcsC fusion protein
Resolution: 3.18 Å
EM Method: Single-particle
Fitted PDBs: 9b8i
Q-score: 0.501
Verma P, Ho R, Chambers SA, Cegelski L, Zimmer J
Nat Commun (2024) 15 pp. 7798-7798 [ Pubmed: 39242554 DOI: doi:10.1038/s41467-024-51838-0 ]
Cryo-EM map of the E. coli cellulose synthase BcsAG3B6 complex
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 9b8v
Q-score: 0.257
Verma P, Ho R, Chambers SA, Cegelski L, Zimmer J
Nat Commun (2024) 15 pp. 7798-7798 [ Pubmed: 39242554 DOI: doi:10.1038/s41467-024-51838-0 ]
- Cellulose biosynthesis protein bcsg (63 kDa, Protein from Escherichia coli)
- Cellulose synthase operon protein b (84 kDa, Protein from Escherichia coli)
- Cellulose synthase catalytic subunit [udp-forming] (101 kDa, Protein from Escherichia coli)
- Bacterial cellulose synthase bcsa-bcsg3-bcsb6 complex (Complex from Escherichia coli)
CryoEM structure of GroEL-GroES-ADP.AlF3-Rubisco, class II.
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 8baa
Q-score: 0.273
Gardner S, Lukyanova N, Darrow MC, Thalassinos K, Saibil HR
To Be Published
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Aluminum fluoride (83 Da, Ligand)
- Ribulose bisphosphate carboxylase (50 kDa, Protein from Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIMB 8255 / S1))
- Co-chaperonin groes (10 kDa, Protein from Escherichia coli (strain K12))
- Potassium ion (39 Da, Ligand)
- Groel-groes-adp.alf3-rubisco (802 kDa, Complex from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Chaperonin groel (57 kDa, Protein from Escherichia coli (strain K12))
Assimilatory NADPH-dependent sulfite reductase minimal dimer
Resolution: 2.78 Å
EM Method: Single-particle
Fitted PDBs: 9c91
Q-score: -0.012
Ghazi Esfahani B, Walia N, Neselu K, Aragon M, Askenasy I, Wei A, Mendez JH, Stroupe ME
To Be Published
- Phosphate ion (94 Da, Ligand)
- Siroheme (916 Da, Ligand)
- Sulfite reductase [nadph] flavoprotein alpha-component (64 kDa, Protein from Escherichia coli)
- Sulfite reductase [nadph] hemoprotein beta-component (64 kDa, Protein from Escherichia coli)
- Potassium ion (39 Da, Ligand)
- Sulfite reductase minimal dimer (124 kDa, Complex from Escherichia coli)
- Flavin mononucleotide (456 Da, Ligand)
- Flavin-adenine dinucleotide (785 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
Structure of the HrpA-bound E. coli disome, Class I
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9gft
Q-score: 0.385
Campbell A, Esser HF, Burroughs AM, Berninghausen O, Aravind L, Becker T, Green R, Beckmann R, Buskirk AR
Mol Cell (2025) [ DOI: doi:10.1016/j.molcel.2025.01.018 Pubmed: 39922193 ]
- 23s rna (941 kDa, RNA from Escherichia coli)
- Small ribosomal subunit protein us7 (20 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl25 (10 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein bs18 (9 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us14 (11 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul4 (22 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein bs16 (9 kDa, Protein from Escherichia coli)
- P-site trna (24 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul6 (18 kDa, Protein from Escherichia coli)
- E. coli disome (Complex from Escherichia coli)
- Large ribosomal subunit protein bl17 (14 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us9 (14 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul22 (12 kDa, Protein from Escherichia coli)
- Hrpa-bound e. coli disome (Complex)
- Large ribosomal subunit protein bl28 (9 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl19 (13 kDa, Protein from Escherichia coli)
- A-site trna (24 kDa, RNA from Escherichia coli)
- Large ribosomal subunit protein bl32 (6 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul15 (15 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl36a (4 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us11 (13 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl20 (13 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us12 (13 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein bs6, fully modified isoform (15 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul24 (11 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us3 (26 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl34 (5 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us5 (17 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us15 (10 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul13 (16 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul18 (12 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl31a (7 kDa, Protein from Escherichia coli)
- A-site trna (24 kDa, RNA from Escherichia coli)
- Vemp nascent chain (20 kDa, Protein from Vibrio alginolyticus)
- Small ribosomal subunit protein us2 (26 kDa, Protein from Escherichia coli)
- Messenger rna (Complex from Vibrio alginolyticus)
- Large ribosomal subunit protein ul29 (7 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us4 (23 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul30 (6 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul10 (17 kDa, Protein from Escherichia coli)
- Vemp nascent chain (Complex from Vibrio alginolyticus)
- Small ribosomal subunit protein bs20 (9 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul14 (13 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl27 (9 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul23 (11 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl35 (7 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us19 (10 kDa, Protein from Escherichia coli)
- Atp-dependent rna helicase hrpa (152 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us10 (11 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl32 (6 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein bs21 (8 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl33 (6 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul2 (29 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us13 (13 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul5 (20 kDa, Protein from Escherichia coli)
- 5s ribosomal rna (38 kDa, RNA from Escherichia coli)
- 16s ribosomal rna (499 kDa, RNA from Escherichia coli)
- P-site trna (24 kDa, RNA from Escherichia coli)
- Large ribosomal subunit protein ul1 (24 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us17 (9 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl9 (15 kDa, Protein from Escherichia coli)
- Messenger rna (223 kDa, RNA from Vibrio alginolyticus)
- Large ribosomal subunit protein bl21 (11 kDa, Protein from Escherichia coli)
Structure of the HrpA-bound E. coli disome, Class II
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9ggr
Q-score: 0.311
Campbell A, Esser HF, Burroughs AM, Berninghausen O, Aravind L, Becker T, Green R, Beckmann R, Buskirk AR
Mol Cell (2025) [ DOI: doi:10.1016/j.molcel.2025.01.018 Pubmed: 39922193 ]
- Small ribosomal subunit protein us7 (20 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- Atp-dependent rna helicase hrpa (149 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl25 (10 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein bs18 (9 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us14 (11 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul4 (22 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein bs16 (9 kDa, Protein from Escherichia coli)
- P-site trna (24 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul6 (18 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl17 (14 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us9 (14 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul22 (12 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl28 (9 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl19 (13 kDa, Protein from Escherichia coli)
- A-site trna (24 kDa, RNA from Escherichia coli)
- Large ribosomal subunit protein ul15 (15 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl36a (4 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us11 (13 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl20 (13 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us12 (13 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein bs6, fully modified isoform (15 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul24 (11 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us3 (26 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl34 (5 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us5 (17 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us15 (10 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul13 (16 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul18 (12 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl31a (7 kDa, Protein from Escherichia coli)
- A-site trna (24 kDa, RNA from Escherichia coli)
- Vemp nascent chain (20 kDa, Protein from Vibrio alginolyticus)
- Small ribosomal subunit protein us2 (26 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul29 (7 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us4 (23 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul30 (6 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul10 (17 kDa, Protein from Escherichia coli)
- 23s ribosomal rna (941 kDa, RNA from Escherichia coli)
- Small ribosomal subunit protein bs20 (9 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul14 (13 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl27 (9 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul23 (11 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl35 (7 kDa, Protein from Escherichia coli)
- Hrpa-bound e. coli disome (Complex from Escherichia coli)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us19 (10 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us10 (11 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl32 (6 kDa, Protein from Escherichia coli)
- Atp-dependent rna helicase hrpa (152 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein bs21 (8 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl33 (6 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul2 (29 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us13 (13 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul5 (20 kDa, Protein from Escherichia coli)
- 5s ribosomal rna (38 kDa, RNA from Escherichia coli)
- 16s ribosomal rna (499 kDa, RNA from Escherichia coli)
- P-site trna (24 kDa, RNA from Escherichia coli)
- Large ribosomal subunit protein ul1 (24 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us17 (9 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl9 (15 kDa, Protein from Escherichia coli)
- Messenger rna (17 kDa, RNA from Vibrio alginolyticus)
- Large ribosomal subunit protein bl21 (11 kDa, Protein from Escherichia coli)
cryo-EM structure of a nanobody bound heliorhodopsin
Resolution: 3.23 Å
EM Method: Single-particle
Fitted PDBs: 9ljj
Q-score: 0.531
Xia R, Sun M, Lu Y, Wang N, Zhang A, Guo C, Xu Z, Cai X, He Y
Biochem Biophys Res Commun (2025) 750 pp. 151398-151398 [ Pubmed: 39889627 DOI: doi:10.1016/j.bbrc.2025.151398 ]
- 1,2-dilauroyl-sn-glycero-3-phosphate (535 Da, Ligand)
- Palmitic acid (256 Da, Ligand)
- Nanobody b4 (13 kDa, Protein from Vicugna pacos)
- Heliorhodopsin (28 kDa, Protein from Escherichia coli)
- Retinal (284 Da, Ligand)
- Dimer complex (Complex from Escherichia coli)
- Acetate ion (59 Da, Ligand)