CryoEM structure of GroEL-GroES-ADP.AlF3-Rubisco, class II.
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 8baa
Q-score: 0.273
Gardner S, Lukyanova N, Darrow MC, Thalassinos K, Saibil HR
To Be Published
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Aluminum fluoride (83 Da, Ligand)
- Ribulose bisphosphate carboxylase (50 kDa, Protein from Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIMB 8255 / S1))
- Co-chaperonin groes (10 kDa, Protein from Escherichia coli (strain K12))
- Potassium ion (39 Da, Ligand)
- Groel-groes-adp.alf3-rubisco (802 kDa, Complex from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Chaperonin groel (57 kDa, Protein from Escherichia coli (strain K12))
Cryo-EM structure of E. coli FimH lectin domain bound to Fabs 440-2 and 454-3
Resolution: 4.24 Å
EM Method: Single-particle
Fitted PDBs: 9d6f
Q-score: 0.412
Silmon de Monerri NC, Che Y, Lees JA, Jasti J, Wu H, Griffor MC, Kodali S, Hawkins JC, Lypowy J, Ponce C, Curley K, Esadze A, Carcamo J, Keeney D, Illenberger A, Matsuka YV, Shanker S, Chorro L, Gribenko AV, Han S, Anderson AS, Donald RGK
To Be Published
- Fimh-dsg tm (Complex from Escherichia coli)
- Fab 440-2 (Complex from Mus musculus)
- 440-2 fab light chain (24 kDa, Protein from Mus musculus)
- Fimh-dsg tm in complex with fabs 440-2 and 445-3 (Complex)
- 445-3 fab heavy chain (24 kDa, Protein from Mus musculus)
- Fab 445-3 (Complex from Mus musculus)
- 440-2 fab heavy chain (24 kDa, Protein from Mus musculus)
- 445-3 fab light chain (23 kDa, Protein from Mus musculus)
- Type 1 fimbrin d-mannose specific adhesin fimh, donor strand complemented with fimg peptide 'triple mutant' (32 kDa, Protein from Escherichia coli)
Cryo-EM structure of E. coli FimH lectin domain bound to Fabs 329-2 and 454-3
Resolution: 3.12 Å
EM Method: Single-particle
Fitted PDBs: 8v93
Q-score: 0.26
Che Y, Lees JA, Jasti J, Griffor MC, Kodali S, Lypowy J, Hawkins JC, Curley K, Carcamo J, Esadze A, Keeney D, Illenberger A, Matsuka Y, Shanker S, Chorro L, Gribenko AV, Han S, Anderson AS, Donald RGK, Silmon de Monerri NC
To Be Published
- Fab 329-2 light chain (23 kDa, Protein from Mus musculus)
- Fab 454-3 heavy chain (23 kDa, Protein from Mus musculus)
- Ternary complex of e. coli fimh with fabs 329-2 and 454-3 (Complex from Escherichia coli)
- Fab 329-2 heavy chain (24 kDa, Protein from Mus musculus)
- Fab 454-3 light chain (23 kDa, Protein from Mus musculus)
- Type 1 fimbrin d-mannose specific adhesin fimh, donor strand complemented with fimg peptide 'triple mutant' (32 kDa, Protein from Escherichia coli)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 9gcs
Q-score: 0.276
Gjorgjevikj D, Kumar N, Wang B, Hilal T, Said N, Loll B, Artsimovitch I, Sen R, Wahl MC
Nat Commun (2025) 16 pp. 550-550 [ DOI: doi:10.1038/s41467-025-55897-9 Pubmed: 39788982 ]
- Transcription termination factor rho (Complex from Escherichia coli)
- Complex of e. coli transcription termination factor rho with atp and p4 polarity suppression protein psu (Complex)
- Transcription termination factor rho (47 kDa, Protein from Escherichia coli)
- Polarity suppression protein (Complex from Enterobacteria phage P4)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Polarity suppression protein (21 kDa, Protein from Enterobacteria phage P4)
Rho-ATP-Psu complex II expanded
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 9gct
Q-score: 0.274
Gjorgjevikj D, Kumar N, Wang B, Hilal T, Said N, Loll B, Artsimovitch I, Sen R, Wahl MC
Nat Commun (2025) 16 pp. 550-550 [ DOI: doi:10.1038/s41467-025-55897-9 Pubmed: 39788982 ]
- Transcription termination factor rho (Complex from Escherichia coli)
- Complex of e. coli transcription termination factor rho with atp and p4 polarity suppression protein psu (Complex)
- Transcription termination factor rho (47 kDa, Protein from Escherichia coli)
- Polarity suppression protein (Complex from Enterobacteria phage P4)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Polarity suppression protein (21 kDa, Protein from Enterobacteria phage P4)
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 9gcu
Q-score: 0.475
Gjorgjevikj D, Kumar N, Wang B, Hilal T, Said N, Loll B, Artsimovitch I, Sen R, Wahl MC
Nat Commun (2025) 16 pp. 550-550 [ DOI: doi:10.1038/s41467-025-55897-9 Pubmed: 39788982 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Transcription termination factor rho (47 kDa, Protein from Escherichia coli)
- Complex of e. coli transcription termination factor rho p167l variant with atp gamma s (Complex)
- Transcription termination factor rho p167l variant (Complex from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Water (18 Da, Ligand)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8peu
Q-score: 0.294
Gjorgjevikj D, Kumar N, Wang B, Hilal T, Said N, Loll B, Artsimovitch I, Sen R, Wahl MC
Nat Commun (2025) 16 pp. 550-550 [ DOI: doi:10.1038/s41467-025-55897-9 Pubmed: 39788982 ]
- Complex of e. coli transcription termination factor rho with the atp analog, atpgammas and p4 polarity suppression protein psu (Complex)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Transcription termination factor rho (Complex from Escherichia coli)
- Transcription termination factor rho (47 kDa, Protein from Escherichia coli)
- Polarity suppression protein (Complex from Enterobacteria phage P4)
- Magnesium ion (24 Da, Ligand)
- Polarity suppression protein (21 kDa, Protein from Enterobacteria phage P4)
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 8pew
Q-score: 0.216
Gjorgjevikj D, Kumar N, Wang B, Hilal T, Said N, Loll B, Artsimovitch I, Sen R, Wahl MC
Nat Commun (2025) 16 pp. 550-550 [ DOI: doi:10.1038/s41467-025-55897-9 Pubmed: 39788982 ]
- Complex of e. coli transcription termination factor rho with the atp analog, atpgammas and p4 polarity suppression protein psu (Complex)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Transcription termination factor rho (Complex from Escherichia coli)
- Transcription termination factor rho (47 kDa, Protein from Escherichia coli)
- Polarity suppression protein (Complex from Enterobacteria phage P4)
- Magnesium ion (24 Da, Ligand)
- Polarity suppression protein (21 kDa, Protein from Enterobacteria phage P4)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8pex
Q-score: 0.373
Gjorgjevikj D, Kumar N, Wang B, Hilal T, Said N, Loll B, Artsimovitch I, Sen R, Wahl MC
Nat Commun (2025) 16 pp. 550-550 [ DOI: doi:10.1038/s41467-025-55897-9 Pubmed: 39788982 ]
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Transcription termination factor rho (Complex from Escherichia coli)
- Transcription termination factor rho (47 kDa, Protein from Escherichia coli)
- Complex of e. coli transcription termination factor rho p167l variant with the atp analog, atpgammas and p4 polarity suppression protein psu (Complex)
- Polarity suppression protein (Complex from Enterobacteria phage P4)
- Magnesium ion (24 Da, Ligand)
- Polarity suppression protein (21 kDa, Protein from Enterobacteria phage P4)
Rho P167L-ATPgS-Psu complex II
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8pey
Q-score: 0.407
Gjorgjevikj D, Kumar N, Wang B, Hilal T, Said N, Loll B, Artsimovitch I, Sen R, Wahl MC
Nat Commun (2025) 16 pp. 550-550 [ DOI: doi:10.1038/s41467-025-55897-9 Pubmed: 39788982 ]
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Transcription termination factor rho (Complex from Escherichia coli)
- Transcription termination factor rho (47 kDa, Protein from Escherichia coli)
- Complex of e. coli transcription termination factor rho p167l variant with the atp analog, atpgammas and p4 polarity suppression protein psu (Complex)
- Polarity suppression protein (Complex from Enterobacteria phage P4)
- Magnesium ion (24 Da, Ligand)
- Polarity suppression protein (21 kDa, Protein from Enterobacteria phage P4)