Cryo-EM structure of the E. coli BrxX methyltransferase complexed with Ocr
Cryo-EM structure of Cas5-HNH Cascade bound with sDNA, Conf2
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8zp9
Q-score: 0.459
Liu YN, Wang L, Zhang H, Zhu H
To Be Published
- Crispr system cascade subunit casc (41 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Dna (60-mer) (18 kDa, DNA from Escherichia coli)
- Rna (61-mer) (19 kDa, RNA from Escherichia coli)
- Cas5-hnh cascade (400 MDa, Complex from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Crispr system cascade subunit casd (43 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
Cryo-EM structure of Cas5-HNH Cascade bound with dsDNA
Resolution: 2.93 Å
EM Method: Single-particle
Fitted PDBs: 9jxs
Q-score: 0.446
Liu YN, Wang L, Zhang H, Zhu H
To Be Published
- Crispr system cascade subunit casc (41 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Cas5-hnh cascade complex bound with dna (400 MDa, Complex from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Non-target dna (16 kDa, DNA from Escherichia coli)
- Dna (54-mer) (16 kDa, DNA from Escherichia coli)
- Rna (61-mer) (19 kDa, RNA from Escherichia coli)
- Crispr system cascade subunit casd (43 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Magnesium ion (24 Da, Ligand)
- Crispr-associated protein cse2 (crispr_cse2) (20 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Crispr-associated protein cse1 (crispr_cse1) (60 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Crispr-associated endoribonuclease cse3 (31 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
Cryo-EM structure of Cas5-HNH Cascade bound with sDNA, Conf1
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8zp7
Q-score: 0.517
Liu YN, Wang L, Zhang H, Zhu H
To Be Published
- Crispr system cascade subunit casc (41 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Dna (60-mer) (18 kDa, DNA from Escherichia coli)
- Rna (61-mer) (19 kDa, RNA from Escherichia coli)
- Crispr-associated protein cse1 (crispr_cse1) (62 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Crispr system cascade subunit casd (43 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Magnesium ion (24 Da, Ligand)
- Cas5-hnh cascade (400 MDa, Complex from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Crispr-associated protein cse2 (crispr_cse2) (20 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Crispr-associated endoribonuclease cse3 (31 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
E.coli GroEL + PBZ1587 inhibitor
Resolution: 3.26 Å
EM Method: Single-particle
Fitted PDBs: 9c0b
Q-score: 0.486
Godek J, Sivinski J, Watson ER, Lebario F, Xu W, Stevens M, Zerio CJ, Ambrose AJ, Zhu X, Trindl CA, Zhang DD, Johnson SM, Lander GC, Chapman E
J Am Chem Soc (2024) 146 pp. 20845-20856 [ DOI: doi:10.1021/jacs.4c05057 Pubmed: 39041457 ]
Resolution: 3.41 Å
EM Method: Single-particle
Fitted PDBs: 9c0c
Q-score: 0.486
Godek J, Sivinski J, Watson ER, Lebario F, Xu W, Stevens M, Zerio CJ, Ambrose AJ, Zhu X, Trindl CA, Zhang DD, Johnson SM, Lander GC, Chapman E
J Am Chem Soc (2024) 146 pp. 20845-20856 [ DOI: doi:10.1021/jacs.4c05057 Pubmed: 39041457 ]
- 60 kda chaperonin (57 kDa, Protein from Escherichia coli)
- E.coli groel apoenzyme (Complex from Escherichia coli)
Cryo-EM Structure of CdnG-E2 complex from Serratia marcescens (UltrAuFoil)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8hsb
Q-score: 0.38
Yan Y, Xiao J, Huang F, Xian W, Yu B, Cheng R, Wu H, Lu X, Wang X, Huang W, Li J, Oyejobi GK, Robinson CV, Wu H, Wu D, Liu X, Wang L, Zhu B
Nat Microbiol (2024) 9 pp. 1566-1578 [ Pubmed: 38649411 DOI: doi:10.1038/s41564-024-01684-z ]
- Cdng (45 kDa, Protein from Serratia marcescens)
- Cdng-e2 binary complex (Complex from Serratia marcescens)
- Type vi secretion protein (18 kDa, Protein from Serratia marcescens)
Negative stain EM assembly of MYC, JAZ, and NINJA complex
Resolution: 10.4 Å
EM Method: Single-particle
Fitted PDBs: 8t2i
Q-score: 0.038
Zhou XE, Zhang Y, Yao J, Zheng J, Zhou Y, He Q, Moreno J, Lam VQ, Cao X, Sugimoto K, Vanegas-Cano L, Kariapper L, Suino-Powell K, Zhu Y, Novick S, Griffin PR, Zhang F, Howe GA, Melcher K
Plant Commun. (2023) 4 pp. 100639-100639 [ Pubmed: 37322867 DOI: doi:10.1016/j.xplc.2023.100639 ]
- Transcription factor myc3 (20 kDa, Protein from Arabidopsis thaliana)
- Maltose/maltodextrin-binding periplasmic protein (44 kDa, Protein from Escherichia coli)
- Mbp fused myc jaz ninja complex (Complex from Arabidopsis thaliana)
- Protein tify 10a (27 kDa, Protein from Arabidopsis thaliana)
- Afp homolog 2 (44 kDa, Protein from Arabidopsis thaliana)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8ips
Q-score: 0.472
Zhu C, Shi Y, Yu J, Zhao W, Li L, Liang J, Yang X, Zhang B, Zhao Y, Gao Y, Chen X, Yang X, Zhang L, Guddat LW, Liu L, Yang H, Rao Z, Li J
Protein Cell (2023) 14 pp. 919-923 [ DOI: doi:10.1093/procel/pwad022 Pubmed: 37144855 ]
- Abc transporter, cyddc cysteine exporter (cyddc-e) family, permease/atp-binding protein cydc (64 kDa, Protein from Escherichia coli (strain B / BL21-DE3))
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Abc transporter, cyddc cysteine exporter (cyddc-e) family, permease/atp-binding protein cydd (65 kDa, Protein from Escherichia coli (strain B / BL21-DE3))
- Cyddc (Complex from Escherichia coli)
Cryo-EM structure of heme transporter CydDC from Escherichia coli in the occluded ATP bound state
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8ipt
Q-score: 0.456
Zhu C, Shi Y, Yu J, Zhao W, Li L, Liang J, Yang X, Zhang B, Zhao Y, Gao Y, Chen X, Yang X, Zhang L, Guddat LW, Liu L, Yang H, Rao Z, Li J
Protein Cell (2023) 14 pp. 919-923 [ DOI: doi:10.1093/procel/pwad022 Pubmed: 37144855 ]
- Abc transporter, cyddc cysteine exporter (cyddc-e) family, permease/atp-binding protein cydc (62 kDa, Protein from Escherichia coli)
- Abc transporter, cyddc cysteine exporter (cyddc-e) family, permease/atp-binding protein cydd (65 kDa, Protein from Escherichia coli)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Cyddc (Complex from Escherichia coli)