Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7bl5
Q-score: 0.363
Nikolay R, Hilal T, Schmidt S, Qin B, Schwefel D, Vieira-Vieira CH, Mielke T, Burger J, Loerke J, Amikura K, Flugel T, Ueda T, Selbach M, Deuerling E, Spahn CMT
Mol Cell (2021) 81 pp. 1200-1215.e9 [ DOI: doi:10.1016/j.molcel.2021.02.006 Pubmed: 33639093 ]
- 23s ribosomal rna (946 kDa, RNA from Escherichia coli str. K-12 substr. MG1655)
- Upf0307 protein yjga (21 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- Ribosomal large subunit pseudouridine synthase d (37 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- 50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- Assembly intermediate complex 3 (1 MDa, Complex from Escherichia coli str. K-12 substr. MG1655)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 5s ribosomal rna (38 kDa, RNA from Escherichia coli str. K-12 substr. MG1655)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- Water (18 Da, Ligand)
- 50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- Gtpase obge/cgta (43 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- Ribosomal silencing factor rsfs (11 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 50s ribosomal protein l10 (17 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
Transcription termination intermediate complex 3 delta NusG
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7adc
Q-score: 0.259
Said N, Hilal T, Sunday ND, Khatri A, Burger J, Mielke T, Belogurov GA, Loll B, Sen R, Artsimovitch I, Wahl MC
Science (2021) 371 [ DOI: doi:10.1126/science.abd1673 Pubmed: 33243850 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Transcription termination intermediate complex 3 delta nusg (Complex from Escherichia coli)
- Beryllium trifluoride ion (66 Da, Ligand)
- Ntdna, tdna and rut rna (Complex from synthetic construct)
- Transcription termination factor rho (47 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli)
- Ntdna (15 kDa, DNA from synthetic construct)
- Rut rna (31 kDa, RNA from synthetic construct)
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit omega (10 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Transcription termination intermediate complex 3 delta nusg (800 kDa, Complex)
- Tdna (15 kDa, DNA from synthetic construct)
- Dna-directed rna polymerase subunit beta' (156 kDa, Protein from Escherichia coli)
- Water (18 Da, Ligand)
- Transcription termination/antitermination protein nusa (55 kDa, Protein from Escherichia coli)
Transcription termination intermediate complex IIIa
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 7add
Q-score: 0.217
Said N, Hilal T, Sunday ND, Khatri A, Burger J, Mielke T, Belogurov GA, Loll B, Sen R, Artsimovitch I, Wahl MC
Science (2021) 371 [ DOI: doi:10.1126/science.abd1673 Pubmed: 33243850 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Beryllium trifluoride ion (66 Da, Ligand)
- Ntdna, tdna and rut rna (Complex from synthetic construct)
- Transcription termination factor rho (47 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli)
- Ntdna (15 kDa, DNA from synthetic construct)
- Transcription termination intermediate complex iiia (800 kDa, Complex)
- Rut rna (31 kDa, RNA from synthetic construct)
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit omega (10 kDa, Protein from Escherichia coli)
- Transcription termination intermediate complex iiia (Complex from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Tdna (15 kDa, DNA from synthetic construct)
- Dna-directed rna polymerase subunit beta' (156 kDa, Protein from Escherichia coli)
- Water (18 Da, Ligand)
- Transcription termination/antitermination protein nusa (55 kDa, Protein from Escherichia coli)
Transcription termination intermediate complex 1 delta NusG
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 7adb
Q-score: 0.186
Said N, Hilal T, Sunday ND, Khatri A, Burger J, Mielke T, Belogurov GA, Loll B, Sen R, Artsimovitch I, Wahl MC
Science (2021) 371 [ DOI: doi:10.1126/science.abd1673 Pubmed: 33243850 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Beryllium trifluoride ion (66 Da, Ligand)
- Ntdna (15 kDa, DNA from synthetic construct)
- Rna, dna (Complex from synthetic construct)
- Transcription termination factor rho (47 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli)
- Transcription termination intermediate complex 1 delta nusg (Complex from Escherichia coli)
- Transcription termination intermediate complex 1 delta nusg (800 kDa, Complex)
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit omega (10 kDa, Protein from Escherichia coli)
- Rut rna (31 kDa, RNA from synthetic construct)
- Magnesium ion (24 Da, Ligand)
- Tdna (15 kDa, DNA from synthetic construct)
- Dna-directed rna polymerase subunit beta' (156 kDa, Protein from Escherichia coli)
- Water (18 Da, Ligand)
- Transcription termination/antitermination protein nusa (55 kDa, Protein from Escherichia coli)
Resolution: 3.16 Å
EM Method: Single-particle
Fitted PDBs: 6trd
Q-score: 0.45
Koelsch A, Radon C, Golub M, Baumert A, Burger J, Miehlke T, Lisdat F, Feoktystov A, Pieper J, Zouni A, Wendler P
Curr Opin Struct Biol (2020) 2 pp. 171-179 [ DOI: doi:10.1016/j.crstbi.2020.08.003 ]
- Photosystem i reaction center subunit xii (3 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (83 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Phylloquinone (450 Da, Ligand)
- Photosystem i reaction center subunit psak (8 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Photosystem i iron-sulfur center (8 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Beta-carotene (536 Da, Ligand)
- Photosystem i (1 MDa, Complex from Thermosynechococcus elongatus BP-1)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Photosystem i 4.8k protein (4 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Photosystem i reaction center subunit iii (15 kDa, Protein from Thermosynechococcus elongatus BP-1)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Water (18 Da, Ligand)
- Photosystem i reaction center subunit viii (4 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Photosystem i reaction center subunit ii (15 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Chlorophyll a isomer (893 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Photosystem i reaction center subunit xi (16 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Chlorophyll a (893 Da, Ligand)
- Photosystem i reaction center subunit iv (8 kDa, Protein from Thermosynechococcus elongatus BP-1)
Closed conformation of ABCG2 in the presence of mitoxantrone
Nat Commun (2020) 11 pp. 2264-2264 [ DOI: doi:10.1038/s41467-020-16155-2 Pubmed: 32385283 ]
ABCG2 in the apo-closed conformation in the presence of SN38
Nat Commun (2020) 11 pp. 2264-2264 [ DOI: doi:10.1038/s41467-020-16155-2 Pubmed: 32385283 ]
Chou HT, Apelt L, Farrell DP, White SR, Woodsmith J, Svetlov V, Goldstein JS, Nager AR, Li Z, Muller J, Dollfus H, Nudler E, Stelzl U, DiMaio F, Nachury MV, Walz T
Structure (2019) 27 pp. 1384-1394.e4 [ DOI: doi:10.1016/j.str.2019.06.006 Pubmed: 31303482 ]
- Bbs8 (Protein from Bos taurus)
- Bbs9 (Protein from Bos taurus)
- Bbsome (Complex from Bos taurus)
- Bbs2 (Protein from Bos taurus)
- Bbs7 (Protein from Bos taurus)
- Bbs5 (Protein from Bos taurus)
- Bbs18 (Protein from Bos taurus)
- Bbs1 (Protein from Bos taurus)
- Bbs4 (Protein from Bos taurus)
Chou HT, Apelt L, Farrell DP, White SR, Woodsmith J, Svetlov V, Goldstein JS, Nager AR, Li Z, Muller J, Dollfus H, Nudler E, Stelzl U, DiMaio F, Nachury MV, Walz T
Structure (2019) 27 pp. 1384-1394.e4 [ DOI: doi:10.1016/j.str.2019.06.006 Pubmed: 31303482 ]
- Bbs8 (Protein from Bos taurus)
- Bbs9 (Protein from Bos taurus)
- Bbsome (Complex from Bos taurus)
- Bbs2 (Protein from Bos taurus)
- Bbs7 (Protein from Bos taurus)
- Bbs18 (Protein from Bos taurus)
- Bbs1 (Protein from Bos taurus)
- Bbs4 (Protein from Bos taurus)