CryoEM Density of Acetylated Microtubules
Resolution: 3.7 Å
EM Method: Helical reconstruction
Fitted PDBs: 6o2q
Q-score: 0.428
Eshun-Wilson L, Zhang R, Portran D, Nachury MV, Toso DB, Lohr T, Vendruscolo M, Bonomi M, Fraser JS, Nogales E
PNAS (2019) 116 pp. 10366-10371 [ Pubmed: 31072936 DOI: doi:10.1073/pnas.1900441116 ]
- Acetylated microtubule (Tissue from Sus scrofa)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Tubulin beta chain (49 kDa, Protein from Sus scrofa)
- Magnesium ion (24 Da, Ligand)
- Tubulin alpha-1b chain (50 kDa, Protein from Sus scrofa)
Resolution: 3.3 Å
EM Method: Helical reconstruction
Fitted PDBs: 6o2r
Q-score: 0.461
Eshun-Wilson L, Zhang R, Portran D, Nachury MV, Toso DB, Lohr T, Vendruscolo M, Bonomi M, Fraser JS, Nogales E
PNAS (2019) 116 pp. 10366-10371 [ Pubmed: 31072936 DOI: doi:10.1073/pnas.1900441116 ]
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Tubulin beta chain (49 kDa, Protein from Sus scrofa)
- Magnesium ion (24 Da, Ligand)
- Deacetylated microtubule (Tissue from Sus scrofa)
- Tubulin alpha-1b chain (50 kDa, Protein from Sus scrofa)
Cryo-EM structure of the human TFIIH core complex
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6nmi
Q-score: 0.404
Greber BJ, Toso DB, Fang J, Nogales E
eLife (2019) 8 [ DOI: doi:10.7554/eLife.44771 Pubmed: 30860024 ]
- General transcription factor iih subunit 2, p44 (39 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- General transcription factor iih subunit 3, p34 (34 kDa, Protein from Homo sapiens)
- Transcription factor iih (tfiih) (500 kDa, Complex from Homo sapiens)
- General transcription factor iih subunit 5, p8 (8 kDa, Protein from Homo sapiens)
- General transcription and dna repair factor iih helicase subunit xpb (74 kDa, Protein from Homo sapiens)
- Cdk-activating kinase assembly factor mat1 (35 kDa, Protein from Homo sapiens)
- Iron/sulfur cluster (351 Da, Ligand)
- General transcription and dna repair factor iih helicase subunit xpd (86 kDa, Protein from Homo sapiens)
- General transcription factor iih subunit 1, p62 (57 kDa, Protein from Homo sapiens)
- General transcription factor iih subunit 4, p52 (52 kDa, Protein from Homo sapiens)
Undecorated GMPCPP microtubule
Resolution: 3.1 Å
EM Method: Helical reconstruction
Fitted PDBs: 6dpu
Q-score: 0.494
Zhang R, LaFrance B, Nogales E
PNAS (2018) 115 pp. E6191-E6200 [ DOI: doi:10.1073/pnas.1802637115 Pubmed: 29915050 ]
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Tubulin beta chain (49 kDa, Protein from Sus scrofa)
- Magnesium ion (24 Da, Ligand)
- Microtubule stabilized by gmpcpp (Complex from Sus scrofa)
- Tubulin alpha-1b chain (50 kDa, Protein from Sus scrofa)
Resolution: 3.3 Å
EM Method: Helical reconstruction
Fitted PDBs: 6dpv
Q-score: 0.486
Zhang R, LaFrance B, Nogales E
PNAS (2018) 115 pp. E6191-E6200 [ DOI: doi:10.1073/pnas.1802637115 Pubmed: 29915050 ]
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Dynamic microtubule in gdp state (Complex from Sus scrofa)
- Tubulin beta chain (49 kDa, Protein from Sus scrofa)
- Magnesium ion (24 Da, Ligand)
- Tubulin alpha-1b chain (50 kDa, Protein from Sus scrofa)
Undecorated GTPgammaS microtubule
Resolution: 3.5 Å
EM Method: Helical reconstruction
Fitted PDBs: 6dpw
Q-score: 0.456
Zhang R, LaFrance B, Nogales E
PNAS (2018) 115 pp. E6191-E6200 [ DOI: doi:10.1073/pnas.1802637115 Pubmed: 29915050 ]
- Gtpgammas-microtubule polymerized from gmpcpp-microtubule seeds (Complex from Sus scrofa)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Tubulin beta chain (49 kDa, Protein from Sus scrofa)
- Magnesium ion (24 Da, Ligand)
- Tubulin alpha-1b chain (50 kDa, Protein from Sus scrofa)
- 5'-guanosine-diphosphate-monothiophosphate (539 Da, Ligand)
Resolution: 3.2 Å
EM Method: Helical reconstruction
Fitted PDBs: 6cvj
Q-score: 0.486
Kellogg EH, Hejab NMA, Poepsel S, Downing KH, DiMaio F, Nogales E
Science (2018) 360 pp. 1242-1246 [ DOI: doi:10.1126/science.aat1780 Pubmed: 29748322 ]
- Ternary complex of alpha-beta tubulin with synthetic (r1x4) tau (Complex)
- Microtubule-associated protein tau (Complex from Homo sapiens)
- Tubulin beta chain (Complex from Sus scrofa)
- Microtubule-associated protein tau (21 kDa, Protein from Homo sapiens)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Tubulin beta chain (49 kDa, Protein from Sus scrofa)
- Magnesium ion (24 Da, Ligand)
- Tubulin alpha-1b chain (Complex from Sus scrofa)
- Tubulin alpha-1b chain (50 kDa, Protein from Sus scrofa)
Cryo-EM reconstruction of microtubule-bound synthetic (R2x4) tau
Resolution: 3.9 Å
EM Method: Helical reconstruction
Fitted PDBs: 6cvn
Q-score: 0.377
Kellogg EH, Hejab NMA, Poepsel S, Downing KH, DiMaio F, Nogales E
Science (2018) 360 pp. 1242-1246 [ DOI: doi:10.1126/science.aat1780 Pubmed: 29748322 ]
- Microtubule-associated protein tau (Complex from Homo sapiens)
- Ternary complex of alpha-beta tubulin with synthetic (r2x4) tau (Complex)
- Tubulin beta chain (Complex from Sus scrofa)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Microtubule-associated protein tau (21 kDa, Protein from Homo sapiens)
- Tubulin beta chain (49 kDa, Protein from Sus scrofa)
- Magnesium ion (24 Da, Ligand)
- Tubulin alpha-1b chain (Complex from Sus scrofa)
- Tubulin alpha-1b chain (50 kDa, Protein from Sus scrofa)
Cryo-EM structure of PRC2 bound to cofactors AEBP2 and JARID2 in the Compact Active State
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6c23
Q-score: 0.394
Kasinath V, Faini M, Poepsel S, Reif D, Feng XA, Stjepanovic G, Aebersold R, Nogales E
Science (2018) 359 pp. 940-944 [ Pubmed: 29348366 DOI: doi:10.1126/science.aar5700 ]
- Polycomb protein suz12 (83 kDa, Protein from Homo sapiens)
- Suz12 (11 kDa, Protein from Homo sapiens)
- Ternary complex of prc2 with cofactors aebp2 and jarid2 (300 kDa, Complex from Homo sapiens)
- Jarid2-substrate (735 Da, Protein from Homo sapiens)
- Histone-binding protein rbbp4 (47 kDa, Protein from Homo sapiens)
- Polycomb protein eed (50 kDa, Protein from Homo sapiens)
- Protein jumonji (37 kDa, Protein from Homo sapiens)
- Histone-lysine n-methyltransferase ezh2 (85 kDa, Protein from Homo sapiens)
- Zinc finger protein aebp2 (33 kDa, Protein from Homo sapiens)
- Protein jumonji (37 kDa, Protein from Homo sapiens)
Cryo-EM structure of PRC2 bound to cofactors AEBP2 and JARID2 in the Extended Active State
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6c24
Q-score: 0.433
Kasinath V, Faini M, Poepsel S, Reif D, Feng XA, Stjepanovic G, Aebersold R, Nogales E
Science (2018) 359 pp. 940-944 [ Pubmed: 29348366 DOI: doi:10.1126/science.aar5700 ]
- Polycomb protein suz12 (83 kDa, Protein from Homo sapiens)
- Suz12 (11 kDa, Protein from Homo sapiens)
- Ternary complex of prc2 with cofactors aebp2 and jarid2 (300 kDa, Complex from Homo sapiens)
- Jarid2-substrate (735 Da, Protein from Homo sapiens)
- Histone-binding protein rbbp4 (47 kDa, Protein from Homo sapiens)
- Protein jumonji (37 kDa, Protein from Homo sapiens)
- Polycomb protein eed (50 kDa, Protein from Homo sapiens)
- Protein jumonji (37 kDa, Protein from Homo sapiens)
- Histone-lysine n-methyltransferase ezh2 (85 kDa, Protein from Homo sapiens)
- Zinc finger protein aebp2 (33 kDa, Protein from Homo sapiens)