The reconstruction of biotin-bound streptavidin at 3.2 Angstrom resolution
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6j6j
Q-score: 0.517
Fan X, Wang J, Zhang X, Yang Z, Zhang JC, Zhao L, Peng HL, Lei J, Wang HW
Nat Commun (2019) 10 pp. 2386-2386 [ Pubmed: 31160591 DOI: doi:10.1038/s41467-019-10368-w ]
- Biotin (244 Da, Ligand)
- Water (18 Da, Ligand)
- Streptavidin with biotin (52 kDa, Complex from Streptomyces avidinii)
- Streptavidin (12 kDa, Protein from Streptomyces avidinii)
The reconstruction of apo-state streptavidin at 3.3 Angstrom resolution
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6j6k
Q-score: 0.497
Fan X, Wang J, Zhang X, Yang Z, Zhang JC, Zhao L, Peng HL, Lei J, Wang HW
Nat Commun (2019) 10 pp. 2386-2386 [ Pubmed: 31160591 DOI: doi:10.1038/s41467-019-10368-w ]
- Streptavidin (52 kDa, Complex from Streptomyces avidinii)
- Streptavidin (12 kDa, Protein from Streptomyces avidinii)
Cryo-EM structure of Echovirus 6 complexed with its uncoating receptor FcRn at PH 7.4
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6ilm
Q-score: 0.456
Zhao X, Zhang G, Liu S, Chen X, Peng R, Dai L, Qu X, Li S, Song H, Gao Z, Yuan P, Liu Z, Li C, Shang Z, Li Y, Zhang M, Qi J, Wang H, Du N, Wu Y, Bi Y, Gao S, Shi Y, Yan J, Zhang Y, Xie Z, Wei W, Gao GF
Cell (2019) 177 pp. 1553-1565.e16 [ DOI: doi:10.1016/j.cell.2019.04.035 Pubmed: 31104841 ]
- Igg receptor fcrn large subunit p51 (29 kDa, Protein from Homo sapiens)
- Capsid protein vp3 (26 kDa, Protein from Echovirus E6)
- Capsid protein vp1 (32 kDa, Protein from Echovirus E6)
- Capsid protein vp2 (28 kDa, Protein from Echovirus E6)
- Beta-2-microglobulin (11 kDa, Protein from Homo sapiens)
- Potassium ion (39 Da, Ligand)
- Sodium ion (22 Da, Ligand)
- Cryo-em structure of echovirus 6 complexed with its uncoating receptor fcrn at ph 7.4 (Complex from Echovirus E6)
- Sphingosine (299 Da, Ligand)
- Capsid protein vp4 (7 kDa, Protein from Echovirus E6)
The crosslinked complex of ISWI-nucleosome in the ADP.BeF-bound state
Resolution: 3.37 Å
EM Method: Single-particle
Fitted PDBs: 6jyl
Q-score: 0.452
Yan L, Wu H, Li X, Gao N, Chen Z
Nat Struct Mol Biol (2019) 26 pp. 258-266 [ DOI: doi:10.1038/s41594-019-0199-9 Pubmed: 30872815 ]
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Beryllium trifluoride ion (66 Da, Ligand)
- Dna (167-mer) (51 kDa, DNA from Escherichia coli K-12)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Histone h2a (13 kDa, Protein from Xenopus laevis)
- Histone h3 (15 kDa, Protein from Xenopus laevis)
- Dna (167-mer) (51 kDa, Protein from Escherichia coli K-12)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Iswi (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Iswi-nucleosome-crosslinked (300 kDa, Complex)
- Nucleosome (Complex from Xenopus laevis)
- Dna (Complex from Escherichia coli K-12)
- Iswi chromatin-remodeling complex atpase isw1 (123 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Structure of Snf2-nucleosome complex in ADP state
Resolution: 3.62 Å
EM Method: Single-particle
Fitted PDBs: 5z3o
Q-score: 0.349
Li M, Xia X, Tian Y, Jia Q, Liu X, Lu Y, Li M, Li X, Chen Z
Nature (2019) 567 pp. 409-413 [ DOI: doi:10.1038/s41586-019-1029-2 Pubmed: 30867599 ]
- Dna (167-mer) (51 kDa, DNA from synthetic construct)
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Histone h2a (13 kDa, Protein from Xenopus laevis)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Complex of snf2 and nucleosome in adp state (300 kDa, Complex from Xenopus laevis)
- Dna (167-mer) (51 kDa, DNA from synthetic construct)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Transcription regulatory protein snf2 (85 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
The complex of ISWI-nucleosome in the ADP.BeF-bound state
Resolution: 3.87 Å
EM Method: Single-particle
Fitted PDBs: 6k1p
Q-score: 0.42
Yan L, Wu H, Li X, Gao N, Chen Z
Nat Struct Mol Biol (2019) 26 pp. 258-266 [ DOI: doi:10.1038/s41594-019-0199-9 Pubmed: 30872815 ]
- Isw1 (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- The complex of iswi-nucleosome in the adp-bef-bound state (300 kDa, Complex)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Beryllium trifluoride ion (66 Da, Ligand)
- Dna (167-mer) (51 kDa, DNA from Escherichia coli K-12)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Nuleosome (Complex from Xenopus laevis)
- Histone h2a (13 kDa, Protein from Xenopus laevis)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Dna (167-mer) (51 kDa, DNA from Escherichia coli K-12)
- Dna (Complex from Escherichia coli K-12)
- Histone h3 (15 kDa, Protein from Xenopus laevis)
- Iswi chromatin-remodeling complex atpase isw1 (123 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
the crosslinked complex of ISWI-nucleosome in the ADP-bound state
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6iro
Q-score: 0.435
Yan L, Wu H, Li X, Gao N, Chen Z
Nat Struct Mol Biol (2019) 26 pp. 258-266 [ DOI: doi:10.1038/s41594-019-0199-9 Pubmed: 30872815 ]
- Isw1 (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Iswi chromatin-remodeling complex atpase isw1 (123 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Histone h3 (15 kDa, Protein from Xenopus laevis)
- Dna (167-mer) (51 kDa, DNA from Escherichia coli K-12)
- Histone h2a (13 kDa, Protein from Xenopus laevis)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Histone octamer (Complex from Xenopus laevis)
- The crosslinked complex of iswi-nucleosome in the adp-bound state (Complex)
- Dna (Complex from Escherichia coli K-12)
- Dna (167-mer) (51 kDa, DNA from Escherichia coli K-12)
Structure of Snf2-MMTV-A nucleosome complex at shl2 in ADP state
Resolution: 3.47 Å
EM Method: Single-particle
Fitted PDBs: 6iy2
Q-score: 0.427
Li M, Xia X, Tian Y, Jia Q, Liu X, Lu Y, Li M, Li X, Chen Z
Nature (2019) 567 pp. 409-413 [ DOI: doi:10.1038/s41586-019-1029-2 Pubmed: 30867599 ]
- Histone h4 (10 kDa, Protein from Xenopus laevis)
- Histone h2b (11 kDa, Protein from Xenopus laevis)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Transcription regulatory protein snf2 (79 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna (167-mer) (44 kDa, DNA from Mus musculus)
- Histone h2a (12 kDa, Protein from Xenopus laevis)
- Dna (147-mer) (45 kDa, DNA from Mus musculus)
- Histone h3 (11 kDa, Protein from Xenopus laevis)
- Structure of snf2-mmtv-a nucleosome complex at shl2 in adp state (300 kDa, Complex from Xenopus laevis)
Adeno-Associated Virus 2 in complex with AAVR
Resolution: 2.84 Å
EM Method: Single-particle
Fitted PDBs: 6ihb
Q-score: 0.437
Zhang R, Cao L, Cui M, Sun Z, Hu M, Zhang R, Stuart W, Zhao X, Yang Z, Li X, Sun Y, Li S, Ding W, Lou Z, Rao Z
Nat Microbiol (2019) 4 pp. 675-682 [ Pubmed: 30742069 DOI: doi:10.1038/s41564-018-0356-7 ]
- Dyslexia-associated protein kiaa0319-like protein (10 kDa, Protein from Homo sapiens)
- Aav2 in complex with aavr (Complex)
- Aavr pkd2 (Complex from Homo sapiens)
- Adeno-associated virus 2 (Complex from Adeno-associated virus 2 (isolate Srivastava/1982))
- Capsid protein vp1 (82 kDa, Protein from Adeno-associated virus 2 (isolate Srivastava/1982))
Cryo-EM structure of T/F100 SOSIP.664 HIV-1 Env trimer in complex with 8ANC195 Fab
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6nqd
Q-score: 0.423
Ananthaswamy N, Fang Q, AlSalmi W, Jain S, Chen Z, Klose T, Sun Y, Liu Y, Mahalingam M, Chand S, Tovanabutra S, Robb ML, Rossmann MG, Rao VB
Nat Commun (2019) 10 pp. 873-873 [ DOI: doi:10.1038/s41467-019-08825-7 Pubmed: 30787293 ]
- T/f100 env trimer (Complex from Human immunodeficiency virus 1)
- T/f100 env trimer-8anc195 fab complex (Complex)
- 8anc195 fab (Complex from Homo sapiens)
- 8anc195 g52k5 light chain (23 kDa, Protein from Homo sapiens)
- T/f100 env gp120 (54 kDa, Protein from Human immunodeficiency virus 1)
- 8anc195 g52k5 heavy chain, ig gamma-1 chain (26 kDa, Protein from Homo sapiens)
- T/f100 env gp41 (20 kDa, Protein from Human immunodeficiency virus 1)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)