Single-particle cryo-EM reconstruction of horse liver alcohol dehydrogenase using 200 keV
Nat Commun (2019) 10 pp. 1032-1032 [ Pubmed: 30833564 DOI: doi:10.1038/s41467-019-08991-8 ]
- Alcohol dehydrogenase from equine liver (81 kDa, Complex from Equus caballus)
- Zinc ion (65 Da, Ligand)
- Alcohol dehydrogenase e chain (39 kDa, Protein from Equus caballus)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
Single-particle cryo-EM reconstruction of human methemoglobin using 200 keV, state 1
Nat Commun (2019) 10 pp. 1032-1032 [ Pubmed: 30833564 DOI: doi:10.1038/s41467-019-08991-8 ]
- Hemoglobin subunit beta (15 kDa, Protein from Homo sapiens)
- Methemoglobin from human (64 kDa, Complex from Homo sapiens)
- Hemoglobin subunit alpha (14 kDa, Protein from Homo sapiens)
- Protoporphyrin ix containing fe (616 Da, Ligand)
H7 HA0 in complex with Fab from H7.5 IgG
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6mlm
Q-score: 0.369
Turner HL, Pallesen J, Lang S, Bangaru S, Urata S, Li S, Cottrell CA, Bowman CA, Crowe Jr JE, Wilson IA, Ward AB
PLoS Biol (2019) 17 pp. e3000139-e3000139 [ DOI: doi:10.1371/journal.pbio.3000139 Pubmed: 30716060 ]
- Light chain fv of h7.5 fab (23 kDa, Protein from Homo sapiens)
- Hemagglutinin ha2 chain (25 kDa, Protein from Influenza A virus)
- Heavy chain fv of h7.5 fab (23 kDa, Protein from Homo sapiens)
- H7 ha0 in complex with h7.5 fab (230 kDa, Complex from Influenza A virus (A/New York/107/2003(H7N2)))
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Hemagglutinin ha1 chain (36 kDa, Protein from Influenza A virus (A/New York/107/2003(H7N2)))
Single-particle cryo-EM reconstruction of human methemoglobin using 200 keV, state 2
Nat Commun (2019) 10 pp. 1032-1032 [ Pubmed: 30833564 DOI: doi:10.1038/s41467-019-08991-8 ]
- Hemoglobin subunit beta (15 kDa, Protein from Homo sapiens)
- Human methemoglobin (64 kDa, Complex from Homo sapiens)
- Hemoglobin subunit alpha (14 kDa, Protein from Homo sapiens)
- Protoporphyrin ix containing fe (616 Da, Ligand)
Resolution: 3.49 Å
EM Method: Single-particle
Fitted PDBs: 6igz
Q-score: 0.475
Qin X, Pi X, Wang W, Han G, Zhu L, Liu M, Cheng L, Shen JR, Kuang T, Sui SF
Nat Plants (2019) 5 pp. 263-272 [ Pubmed: 30850820 DOI: doi:10.1038/s41477-019-0379-y ]
- Heptyl 1-thiohexopyranoside (294 Da, Ligand)
- Psaj (4 kDa, Protein from Bryopsis corticulans)
- Lhca-j (26 kDa, Protein from Bryopsis corticulans)
- Lhca-b (26 kDa, Protein from Bryopsis corticulans)
- Psal (21 kDa, Protein from Bryopsis corticulans)
- Lhca-c (27 kDa, Protein from Bryopsis corticulans)
- Lhca-g (29 kDa, Protein from Bryopsis corticulans)
- Psaf (25 kDa, Protein from Bryopsis corticulans)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Psab (82 kDa, Protein from Bryopsis corticulans)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Psak (12 kDa, Protein from Bryopsis corticulans)
- (6'r,11cis,11'cis,13cis,15cis)-4',5'-didehydro-5',6'-dihydro-beta,beta-carotene (536 Da, Ligand)
- Lhca-d (30 kDa, Protein from Bryopsis corticulans)
- Chlorophyll b (907 Da, Ligand)
- Psad (21 kDa, Protein from Bryopsis corticulans)
- Psac (8 kDa, Protein from Bryopsis corticulans)
- Psae (10 kDa, Protein from Bryopsis corticulans)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Bryopsis corticulans)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Psah (14 kDa, Protein from Bryopsis corticulans)
- Phylloquinone (450 Da, Ligand)
- Lhca-i (24 kDa, Protein from Bryopsis corticulans)
- Psai (3 kDa, Protein from Bryopsis corticulans)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Lhca-a (24 kDa, Protein from Bryopsis corticulans)
- Psag (18 kDa, Protein from Bryopsis corticulans)
- Chlorophyll a (893 Da, Ligand)
- Psaa (83 kDa, Protein from Bryopsis corticulans)
- Lhca-h (28 kDa, Protein from Bryopsis corticulans)
- Psi-lhci (Complex from Bryopsis corticulans)
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 6mid
Q-score: 0.451
Long F, Doyle M, Fernandez E, Miller AS, Klose T, Sevvana M, Bryan A, Davidson E, Doranz BJ, Kuhn RJ, Diamond MS, Crowe Jr JE, Rossmann MG
PNAS (2019) 116 pp. 1591-1596 [ DOI: doi:10.1073/pnas.1815432116 Pubmed: 30642974 ]
- Zika virus (isolate zikv/human/french polynesia/10087pf/2013) (Virus from Zika virus (isolate ZIKV/Human/French Polynesia/10087PF/2013))
- Zikv virion in complex with fab fragments of the potently neutralizing human monoclonal antibody zikv-195 (Complex)
- M protein (8 kDa, Protein from Zika virus (isolate ZIKV/Human/French Polynesia/10087PF/2013))
- Monoclonal antibody zikv-195 light chain (11 kDa, Protein from Homo sapiens)
- E protein (54 kDa, Protein from Zika virus (isolate ZIKV/Human/French Polynesia/10087PF/2013))
- Monoclonal antibody zikv-195 (Complex from Homo sapiens)
- Monoclonal antibody zikv-195 heavy chain (14 kDa, Protein from Homo sapiens)
Cryo-EM structure of the red algal PSI-LHCR
Resolution: 3.63 Å
EM Method: Single-particle
Fitted PDBs: 5zgb
Q-score: 0.399
Pi X, Tian L, Dai HE, Qin X, Cheng L, Kuang T, Sui SF, Shen JR
PNAS (2018) 115 pp. 4423-4428 [ Pubmed: 29632169 DOI: doi:10.1073/pnas.1722482115 ]
- Lhcr2 (21 kDa, Protein from Cyanidioschyzon merolae (strain 10D))
- (2s)-2,3-dihydroxypropyl octadecanoate (358 Da, Ligand)
- 1-dodecanol (186 Da, Ligand)
- Psaj (4 kDa, Protein from Cyanidioschyzon merolae (strain 10D))
- Beta-carotene (536 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Lhcr1 (19 kDa, Protein from Cyanidioschyzon merolae (strain 10D))
- Psak (6 kDa, Protein from Cyanidioschyzon merolae (strain 10D))
- Psaa (82 kDa, Protein from Cyanidioschyzon merolae (strain 10D))
- Lhcr3 (20 kDa, Protein from Cyanidioschyzon merolae strain 10D)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Psab (82 kDa, Protein from Cyanidioschyzon merolae (strain 10D))
- Psao (16 kDa, Protein from Cyanidioschyzon merolae (strain 10D))
- Beta-d-glucopyranose (180 Da, Ligand)
- Psi-5lhcr (Complex from Cyanidioschyzon merolae)
- (1r,2s)-4-{(1e,3e,5e,7e,9e,11e,13e,15e,17e)-18-[(4s)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl}-2,5,5-trimethylcyclohex-3-en-1-ol (568 Da, Ligand)
- Psam (3 kDa, Protein from Cyanidioschyzon merolae (strain 10D))
- Phylloquinone (450 Da, Ligand)
- Psad (15 kDa, Protein from Cyanidioschyzon merolae (strain 10D))
- Psai (3 kDa, Protein from Cyanidioschyzon merolae (strain 10D))
- Chlorophyll a (893 Da, Ligand)
- Psae (10 kDa, Protein from Cyanidioschyzon merolae (strain 10D))
- Psal (15 kDa, Protein from Cyanidioschyzon merolae (strain 10D))
- Iron/sulfur cluster (351 Da, Ligand)
- Psac (8 kDa, Protein from Cyanidioschyzon merolae (strain 10D))
- Psaf (21 kDa, Protein from Cyanidioschyzon merolae (strain 10D))
- Chlorophyll a isomer (893 Da, Ligand)
CryoEM structure of Mical Oxidized Actin (Class 1)
Resolution: 3.9 Å
EM Method: Helical reconstruction
Fitted PDBs: 6av9
Q-score: 0.427
Grintsevich EE, Ge P, Sawaya MR, Yesilyurt HG, Terman JR, Zhou ZH, Reisler E
Nat Commun (2017) 8 pp. 2183-2183 [ DOI: doi:10.1038/s41467-017-02357-8 Pubmed: 29259197 ]
CryoEM structure of Mical Oxidized Actin (Class 1)
Resolution: 3.9 Å
EM Method: Helical reconstruction
Fitted PDBs: 6avb
Q-score: 0.421
Grintsevich EE, Ge P, Sawaya MR, Yesilyurt HG, Terman JR, Zhou ZH, Reisler E
Nat Commun (2017) 8 pp. 2183-2183 [ DOI: doi:10.1038/s41467-017-02357-8 Pubmed: 29259197 ]
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 6c0w
Q-score: 0.39
Pentakota S, Zhou K, Smith C, Maffini S, Petrovic A, Morgan GP, Weir JR, Vetter IR, Musacchio A, Luger K
eLife (2017) 6 [ DOI: doi:10.7554/eLife.33442 Pubmed: 29280735 ]
- Complex of cenp-a nucleosome with cenp-n (230 kDa, Complex from Homo sapiens)
- Histone h2a (14 kDa, Protein from Homo sapiens)
- Histone h2b (13 kDa, Protein from Homo sapiens)
- 147 mer dna (45 kDa, DNA from Escherichia coli)
- Histone h3-like centromeric protein a (16 kDa, Protein from Homo sapiens)
- 147 mer dna (45 kDa, DNA from Escherichia coli)
- Centromere protein n (34 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)