The reconstruction of biotin-bound streptavidin at 3.2 Angstrom resolution
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6j6j
Q-score: 0.517
Fan X, Wang J, Zhang X, Yang Z, Zhang JC, Zhao L, Peng HL, Lei J, Wang HW
Nat Commun (2019) 10 pp. 2386-2386 [ Pubmed: 31160591 DOI: doi:10.1038/s41467-019-10368-w ]
- Biotin (244 Da, Ligand)
- Water (18 Da, Ligand)
- Streptavidin with biotin (52 kDa, Complex from Streptomyces avidinii)
- Streptavidin (12 kDa, Protein from Streptomyces avidinii)
The reconstruction of apo-state streptavidin at 3.3 Angstrom resolution
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6j6k
Q-score: 0.497
Fan X, Wang J, Zhang X, Yang Z, Zhang JC, Zhao L, Peng HL, Lei J, Wang HW
Nat Commun (2019) 10 pp. 2386-2386 [ Pubmed: 31160591 DOI: doi:10.1038/s41467-019-10368-w ]
- Streptavidin (52 kDa, Complex from Streptomyces avidinii)
- Streptavidin (12 kDa, Protein from Streptomyces avidinii)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6jb1
Q-score: 0.406
Ding D, Wang M, Wu JX, Kang Y, Chen L
Cell Rep (2019) 27 pp. 1848-1857.e4 [ Pubmed: 31067468 DOI: doi:10.1016/j.celrep.2019.04.050 ]
- Repaglinide (452 Da, Ligand)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- (2s)-3-(hexadecanoyloxy)-2-[(9z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate (760 Da, Ligand)
- Atp-binding cassette sub-family c member 8 isoform x2 (177 kDa, Protein from Mesocricetus auratus)
- Phosphatidylethanolamine (734 Da, Ligand)
- Atp-sensitive inward rectifier potassium channel 11 (43 kDa, Protein from Mus musculus)
- Digitonin (1 kDa, Ligand)
- Katp (Complex from Mus musculus)
Cryo-EM structure of Echovirus 6 complexed with its uncoating receptor FcRn at PH 7.4
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6ilm
Q-score: 0.456
Zhao X, Zhang G, Liu S, Chen X, Peng R, Dai L, Qu X, Li S, Song H, Gao Z, Yuan P, Liu Z, Li C, Shang Z, Li Y, Zhang M, Qi J, Wang H, Du N, Wu Y, Bi Y, Gao S, Shi Y, Yan J, Zhang Y, Xie Z, Wei W, Gao GF
Cell (2019) 177 pp. 1553-1565.e16 [ DOI: doi:10.1016/j.cell.2019.04.035 Pubmed: 31104841 ]
- Igg receptor fcrn large subunit p51 (29 kDa, Protein from Homo sapiens)
- Capsid protein vp3 (26 kDa, Protein from Echovirus E6)
- Capsid protein vp1 (32 kDa, Protein from Echovirus E6)
- Capsid protein vp2 (28 kDa, Protein from Echovirus E6)
- Beta-2-microglobulin (11 kDa, Protein from Homo sapiens)
- Potassium ion (39 Da, Ligand)
- Sodium ion (22 Da, Ligand)
- Cryo-em structure of echovirus 6 complexed with its uncoating receptor fcrn at ph 7.4 (Complex from Echovirus E6)
- Sphingosine (299 Da, Ligand)
- Capsid protein vp4 (7 kDa, Protein from Echovirus E6)
alpha-SNAP-SNARE subcomplex in the whole 20S complex
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6ip1
Q-score: 0.287
Huang X, Sun S, Wang X, Fan F, Zhou Q, Lu S, Cao Y, Wang QW, Dong MQ, Yao J, Sui SF
Sci Adv (2019) 5 pp. eaau8164-eaau8164 [ DOI: doi:10.1126/sciadv.aau8164 Pubmed: 30989110 ]
- Vesicle-associated membrane protein 2 (10 kDa, Protein from Rattus norvegicus)
- Alpha-snap-snare subcomplex in the whole 20s complex (Complex from Rattus norvegicus)
- Syntaxin-1a (29 kDa, Protein from Rattus norvegicus)
- Alpha-soluble nsf attachment protein (34 kDa, Protein from Bos taurus)
- Synaptosomal-associated protein 25 (9 kDa, Protein from Rattus norvegicus)
- Synaptosomal-associated protein 25 (11 kDa, Protein from Rattus norvegicus)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6nbf
Q-score: 0.444
Zhao LH, Ma S, Sutkeviciute I, Shen DD, Zhou XE, de Waal PW, Li CY, Kang Y, Clark LJ, Jean-Alphonse FG, White AD, Yang D, Dai A, Cai X, Chen J, Li C, Jiang Y, Watanabe T, Gardella TJ, Melcher K, Wang MW, Vilardaga JP, Xu HE, Zhang Y
Science (2019) 364 pp. 148-153 [ Pubmed: 30975883 DOI: doi:10.1126/science.aav7942 ]
- Parathyroid hormone/parathyroid hormone-related peptide receptor (54 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (37 kDa, Protein from Rattus norvegicus)
- Palmitic acid (256 Da, Ligand)
- Nanobody-35 (13 kDa, Protein from synthetic construct)
- Cryo-em structure of parathyroid hormone receptor type 1 in complex with a long-acting parathyroid hormone analog and g protein (Complex from Homo sapiens)
- Gs protein alpha subunit (43 kDa, Protein from Bos taurus)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Bos taurus)
- Long-acting parathyroid hormone analog (4 kDa, Protein from Homo sapiens)
- Cholesterol (386 Da, Ligand)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6nbh
Q-score: 0.347
Zhao LH, Ma S, Sutkeviciute I, Shen DD, Zhou XE, de Waal PW, Li CY, Kang Y, Clark LJ, Jean-Alphonse FG, White AD, Yang D, Dai A, Cai X, Chen J, Li C, Jiang Y, Watanabe T, Gardella TJ, Melcher K, Wang MW, Vilardaga JP, Xu HE, Zhang Y
Science (2019) 364 pp. 148-153 [ Pubmed: 30975883 DOI: doi:10.1126/science.aav7942 ]
- Parathyroid hormone/parathyroid hormone-related peptide receptor (54 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (37 kDa, Protein from Rattus norvegicus)
- Palmitic acid (256 Da, Ligand)
- Nanobody-35 (13 kDa, Protein from synthetic construct)
- Cryo-em structure of parathyroid hormone receptor type 1 in complex with a long-acting parathyroid hormone analog and g protein (Complex from Homo sapiens)
- Gs protein alpha subunit (43 kDa, Protein from Bos taurus)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Bos taurus)
- Long-acting parathyroid hormone analog (4 kDa, Protein from Homo sapiens)
- Cholesterol (386 Da, Ligand)
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 6nbi
Q-score: 0.285
Zhao LH, Ma S, Sutkeviciute I, Shen DD, Zhou XE, de Waal PW, Li CY, Kang Y, Clark LJ, Jean-Alphonse FG, White AD, Yang D, Dai A, Cai X, Chen J, Li C, Jiang Y, Watanabe T, Gardella TJ, Melcher K, Wang MW, Vilardaga JP, Xu HE, Zhang Y
Science (2019) 364 pp. 148-153 [ Pubmed: 30975883 DOI: doi:10.1126/science.aav7942 ]
- Parathyroid hormone/parathyroid hormone-related peptide receptor (54 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (37 kDa, Protein from Rattus norvegicus)
- Nanobody-35 (13 kDa, Protein from synthetic construct)
- Cryo-em structure of parathyroid hormone receptor type 1 in complex with a long-acting parathyroid hormone analog and g protein (Complex from Homo sapiens)
- Gs protein alpha subunit (43 kDa, Protein from Bos taurus)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Bos taurus)
- Long-acting parathyroid hormone analog (4 kDa, Protein from Homo sapiens)
- Cholesterol (386 Da, Ligand)
Human Adenovirus type 3 fiber knob in complex with one copy of Desmoglein-2
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6qnt
Q-score: 0.514
Vassal-Stermann E, Effantin G, Zubieta C, Burmeister W, Iseni F, Wang H, Lieber A, Schoehn G, Fender P
Nat Commun (2019) 10 pp. 1181-1181 [ DOI: doi:10.1038/s41467-019-09220-y Pubmed: 30862836 ]
- Human adenovirus type 3 fibre knob in complex with one copy of desmoglein 2 (Complex from Homo sapiens)
- Human adenovirus type 3 fibre knob in complex with one copy of desmoglein 2 (96 kDa, Complex)
- Desmoglein-2 (23 kDa, Protein from Homo sapiens)
- Fiber protein (20 kDa, Protein from Human adenovirus B serotype 3)
- Human adenovirus type 3 fibre knob in complex with one copy of desmoglein 2 (Complex from Human adenovirus B serotype 3)
Human Adenovirus type 3 fiber knob in complex with two copies of Desmoglein-2
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6qnu
Q-score: 0.47
Vassal-Stermann E, Effantin G, Zubieta C, Burmeister W, Iseni F, Wang H, Lieber A, Schoehn G, Fender P
Nat Commun (2019) 10 pp. 1181-1181 [ DOI: doi:10.1038/s41467-019-09220-y Pubmed: 30862836 ]
- Human adenovirus type 3 fibre knob in complex with two copies of desmoglein 2 (116 kDa, Complex)
- Fiber protein (21 kDa, Protein from Human adenovirus B serotype 3)
- Desmoglein 2 (Complex from Homo sapiens)
- Human adenovirus type 3 fibre knob in complex with two copies of desmoglein 2 (Complex from Human adenovirus B serotype 3)
- Desmoglein-2 (25 kDa, Protein from Homo sapiens)