The reconstruction of biotin-bound streptavidin at 3.2 Angstrom resolution
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6j6j
Q-score: 0.517
Fan X, Wang J, Zhang X, Yang Z, Zhang JC, Zhao L, Peng HL, Lei J, Wang HW
Nat Commun (2019) 10 pp. 2386-2386 [ Pubmed: 31160591 DOI: doi:10.1038/s41467-019-10368-w ]
- Biotin (244 Da, Ligand)
- Water (18 Da, Ligand)
- Streptavidin with biotin (52 kDa, Complex from Streptomyces avidinii)
- Streptavidin (12 kDa, Protein from Streptomyces avidinii)
The reconstruction of apo-state streptavidin at 3.3 Angstrom resolution
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6j6k
Q-score: 0.497
Fan X, Wang J, Zhang X, Yang Z, Zhang JC, Zhao L, Peng HL, Lei J, Wang HW
Nat Commun (2019) 10 pp. 2386-2386 [ Pubmed: 31160591 DOI: doi:10.1038/s41467-019-10368-w ]
- Streptavidin (52 kDa, Complex from Streptomyces avidinii)
- Streptavidin (12 kDa, Protein from Streptomyces avidinii)
The crosslinked complex of ISWI-nucleosome in the ADP.BeF-bound state
Resolution: 3.37 Å
EM Method: Single-particle
Fitted PDBs: 6jyl
Q-score: 0.452
Yan L, Wu H, Li X, Gao N, Chen Z
Nat Struct Mol Biol (2019) 26 pp. 258-266 [ DOI: doi:10.1038/s41594-019-0199-9 Pubmed: 30872815 ]
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Beryllium trifluoride ion (66 Da, Ligand)
- Dna (167-mer) (51 kDa, DNA from Escherichia coli K-12)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Histone h2a (13 kDa, Protein from Xenopus laevis)
- Histone h3 (15 kDa, Protein from Xenopus laevis)
- Dna (167-mer) (51 kDa, Protein from Escherichia coli K-12)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Iswi (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Iswi-nucleosome-crosslinked (300 kDa, Complex)
- Nucleosome (Complex from Xenopus laevis)
- Dna (Complex from Escherichia coli K-12)
- Iswi chromatin-remodeling complex atpase isw1 (123 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Cryo-EM structure of multidrug efflux pump MexAB-OprM (0 degree state)
Resolution: 3.64 Å
EM Method: Single-particle
Fitted PDBs: 6iok
Q-score: 0.456
Tsutsumi K, Yonehara R, Ishizaka-Ikeda E, Miyazaki N, Maeda S, Iwasaki K, Nakagawa A, Yamashita E
Nat Commun (2019) 10 pp. 1520-1520 [ Pubmed: 30944318 DOI: doi:10.1038/s41467-019-09463-9 ]
- Membrane protein complex (730 kDa, Complex from Pseudomonas aeruginosa)
- Outer membrane protein oprm (51 kDa, Protein from Pseudomonas aeruginosa PAO1)
- Multidrug resistance protein mexb (113 kDa, Protein from Pseudomonas aeruginosa PAO1)
- Multidrug resistance protein mexa (38 kDa, Protein from Pseudomonas aeruginosa PAO1)
Cryo-EM structure of multidrug efflux pump MexAB-OprM (60 degree state)
Resolution: 3.76 Å
EM Method: Single-particle
Fitted PDBs: 6iol
Q-score: 0.441
Tsutsumi K, Yonehara R, Ishizaka-Ikeda E, Miyazaki N, Maeda S, Iwasaki K, Nakagawa A, Yamashita E
Nat Commun (2019) 10 pp. 1520-1520 [ Pubmed: 30944318 DOI: doi:10.1038/s41467-019-09463-9 ]
- Membrane protein complex (730 kDa, Complex from Pseudomonas aeruginosa)
- Outer membrane protein oprm (51 kDa, Protein from Pseudomonas aeruginosa PAO1)
- Multidrug resistance protein mexb (113 kDa, Protein from Pseudomonas aeruginosa PAO1)
- Multidrug resistance protein mexa (38 kDa, Protein from Pseudomonas aeruginosa)
Single-particle cryo-EM reconstruction of horse liver alcohol dehydrogenase using 200 keV
Nat Commun (2019) 10 pp. 1032-1032 [ Pubmed: 30833564 DOI: doi:10.1038/s41467-019-08991-8 ]
- Alcohol dehydrogenase from equine liver (81 kDa, Complex from Equus caballus)
- Zinc ion (65 Da, Ligand)
- Alcohol dehydrogenase e chain (39 kDa, Protein from Equus caballus)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
Single-particle cryo-EM reconstruction of human methemoglobin using 200 keV, state 1
Nat Commun (2019) 10 pp. 1032-1032 [ Pubmed: 30833564 DOI: doi:10.1038/s41467-019-08991-8 ]
- Hemoglobin subunit beta (15 kDa, Protein from Homo sapiens)
- Methemoglobin from human (64 kDa, Complex from Homo sapiens)
- Hemoglobin subunit alpha (14 kDa, Protein from Homo sapiens)
- Protoporphyrin ix containing fe (616 Da, Ligand)
Cryo-EM structure of the human TFIIH core complex
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6nmi
Q-score: 0.404
Greber BJ, Toso DB, Fang J, Nogales E
eLife (2019) 8 [ DOI: doi:10.7554/eLife.44771 Pubmed: 30860024 ]
- General transcription factor iih subunit 5, p8 (8 kDa, Protein from Homo sapiens)
- General transcription and dna repair factor iih helicase subunit xpb (74 kDa, Protein from Homo sapiens)
- Cdk-activating kinase assembly factor mat1 (35 kDa, Protein from Homo sapiens)
- General transcription factor iih subunit 1, p62 (57 kDa, Protein from Homo sapiens)
- Iron/sulfur cluster (351 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- General transcription factor iih subunit 2, p44 (39 kDa, Protein from Homo sapiens)
- General transcription factor iih subunit 3, p34 (34 kDa, Protein from Homo sapiens)
- General transcription and dna repair factor iih helicase subunit xpd (86 kDa, Protein from Homo sapiens)
- General transcription factor iih subunit 4, p52 (52 kDa, Protein from Homo sapiens)
- Transcription factor iih (tfiih) (500 kDa, Complex from Homo sapiens)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6nbq
Q-score: 0.51
Laughlin TG, Bayne AN, Trempe JF, Savage DF, Davies KM
Nature (2019) 566 pp. 411-414 [ DOI: doi:10.1038/s41586-019-0921-0 Pubmed: 30742075 ]
- Nad(p)h-quinone oxidoreductase subunit 4l (11 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Nad(p)h-quinone oxidoreductase chain 4 1 (57 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Nad(p)h-quinone oxidoreductase subunit 3 (15 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Nad(p)h-quinone oxidoreductase subunit k (25 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Nadh dehydrogenase subunit 5 (72 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Nadh-quinone oxidoreductase subunit j (21 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Nad(p)h-quinone oxidoreductase subunit l (8 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Proton-translocating nadh-quinone dehydrogenase subunit p ndhp (4 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Nad(p)h-quinone oxidoreductase subunit n (16 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Nad(p)h-quinone oxidoreductase subunit m (12 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Ndha (40 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Nad(p)h dehydrogenase-like complex (ndh/ndh-1_1/ndh1l) from t.elongatus (400 kDa, Complex from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit o (7 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Nad(p)h-quinone oxidoreductase subunit 2 (55 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Nad(p)h-quinone oxidoreductase subunit i (22 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Nad(p)h-quinone oxidoreductase subunit j (19 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Nad(p)h-quinone oxidoreductase subunit h (45 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Iron/sulfur cluster (351 Da, Ligand)
- Tlr0636 protein (12 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6nbx
Q-score: 0.488
Laughlin TG, Bayne AN, Trempe JF, Savage DF, Davies KM
Nature (2019) 566 pp. 411-414 [ DOI: doi:10.1038/s41586-019-0921-0 Pubmed: 30742075 ]
- Nad(p)h-quinone oxidoreductase subunit 4l (11 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Nad(p)h dehydrogenase-like complex (ndh/ndh-1_1/ndh1l)from t.elongatus (420 kDa, Complex from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase chain 4 1 (57 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Nad(p)h-quinone oxidoreductase subunit 1 (40 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Nad(p)h-quinone oxidoreductase subunit 3 (15 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Nadh dehydrogenase subunit 5 (72 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Nad(p)h-quinone oxidoreductase subunit k (25 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Proton-translocating nadh-quinone dehydrogenase subunit q ndhq (4 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Nadh-quinone oxidoreductase subunit j (21 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Nad(p)h-quinone oxidoreductase subunit l (8 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Proton-translocating nadh-quinone dehydrogenase subunit p ndhp (4 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Nad(p)h-quinone oxidoreductase subunit n (16 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Nad(p)h-quinone oxidoreductase subunit m (12 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Nad(p)h-quinone oxidoreductase subunit o (7 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Nad(p)h-quinone oxidoreductase subunit 2 (55 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Nad(p)h-quinone oxidoreductase subunit i (22 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Nad(p)h-quinone oxidoreductase subunit j (19 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Nad(p)h-quinone oxidoreductase subunit h (45 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Iron/sulfur cluster (351 Da, Ligand)
- Tlr0636 protein (12 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))