Resolution: 3.61 Å
EM Method: Single-particle
Fitted PDBs: 9cli
Q-score: 0.474
Mudrick HE, Lu SC, Bhandari J, Barry ME, Hemsath JR, Andres FGM, Ma OX, Barry MA, Reddy VS
Nat Commun (2024) 15 pp. 9768-9768 [ Pubmed: 39528527 DOI: doi:10.1038/s41467-024-54049-9 ]
- Human adenovirus 5 (ad5) in complex with coagulation factor fx (400 kDa, Complex from Human adenovirus 5)
- Hexon protein (Cellular component from Human adenovirus 5)
- Calcium ion (40 Da, Ligand)
- Hexon protein (108 kDa, Protein from Human adenovirus 5)
- Human coagulation factor x (Cellular component from human blood metagenome)
- Coagulation factor x (55 kDa, Protein from Homo sapiens)
Resolution: 4.13 Å
EM Method: Single-particle
Fitted PDBs: 9cln
Q-score: 0.335
Mudrick HE, Lu SC, Bhandari J, Barry ME, Hemsath JR, Andres FGM, Ma OX, Barry MA, Reddy VS
Nat Commun (2024) 15 pp. 9768-9768 [ Pubmed: 39528527 DOI: doi:10.1038/s41467-024-54049-9 ]
- Human adenovirus 5 (ad5) in complex with coagulation factor fii (400 kDa, Complex from Human adenovirus 5)
- Hexon protein (Cellular component from Human adenovirus 5)
- Prothrombin (70 kDa, Protein from Homo sapiens)
- Human coagulation factor ii (Cellular component from Homo sapiens)
- Hexon protein (108 kDa, Protein from Human adenovirus 5)
- Calcium ion (40 Da, Ligand)
Cryo-EM model derived from localized reconstruction of Ad657-hexon-FII complex at 4.14A resolution
Resolution: 4.17 Å
EM Method: Single-particle
Fitted PDBs: 9cmo
Q-score: 0.409
Mudrick HE, Lu SC, Bhandari J, Barry ME, Hemsath JR, Andres FGM, Ma OX, Barry MA, Reddy VS
Nat Commun (2024) 15 pp. 9768-9768 [ Pubmed: 39528527 DOI: doi:10.1038/s41467-024-54049-9 ]
- Prothrombin (70 kDa, Protein from Homo sapiens)
- Hexon protein (108 kDa, Protein from Human adenovirus 6)
- Adenovirus657 hexon (Complex from Human adenovirus 6)
- Human coagulation factor x (Cellular component from human blood metagenome)
- Calcium ion (40 Da, Ligand)
- Human adenovirus 657 in complex with coagulation factor fii (55 MDa, Complex from Human adenovirus 6)
Cryo-EM structure of human HCN3 channel with cAMP
Resolution: 3.19 Å
EM Method: Single-particle
Fitted PDBs: 8io0
Q-score: 0.42
Cryo-EM Structure of MILI-piRNA-target (8-nt)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9ij0
Q-score: 0.417
Li Z, Xu Q, Zhong J, Zhang Y, Zhang T, Ying X, Lu X, Li X, Wan L, Xue J, Huang J, Zhen Y, Zhang Z, Wu J, Shen EZ
Nature (2025) [ DOI: doi:10.1038/s41586-024-08438-1 Pubmed: 39814893 ]
- Rna (26-mer) (8 kDa, RNA from Homo sapiens)
- Rna (5'-r(p*gp*ap*up*gp*gp*up*ap*a)-3') (2 kDa, RNA from Homo sapiens)
- Piwi-like protein 2 (109 kDa, Protein from Mus musculus)
- Magnesium ion (24 Da, Ligand)
- Mili-pirna-target (8-nt) (Complex from Homo sapiens)
Cryo-EM Structure of MILI-piRNA-target (22-nt, bilobed)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9ij1
Q-score: 0.325
Li Z, Xu Q, Zhong J, Zhang Y, Zhang T, Ying X, Lu X, Li X, Wan L, Xue J, Huang J, Zhen Y, Zhang Z, Wu J, Shen EZ
Nature (2025) [ DOI: doi:10.1038/s41586-024-08438-1 Pubmed: 39814893 ]
- Rna (26-mer) (8 kDa, RNA from Homo sapiens)
- Piwi-like protein 2 (109 kDa, Protein from Mus musculus)
- Magnesium ion (24 Da, Ligand)
- Mili-pirna-target (22-nt, bilobed) (Complex from Homo sapiens)
- Rna (5'-r(p*cp*ap*ap*gp*up*up*up*cp*cp*ap*up*gp*up*up*gp*ap*up*gp*gp*up*a)-3') (6 kDa, RNA from Homo sapiens)
Cryo-EM Structure of MILI-piRNA-target (22-nt, comma)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 9ij2
Q-score: 0.188
Li Z, Xu Q, Zhong J, Zhang Y, Zhang T, Ying X, Lu X, Li X, Wan L, Xue J, Huang J, Zhen Y, Zhang Z, Wu J, Shen EZ
Nature (2025) [ DOI: doi:10.1038/s41586-024-08438-1 Pubmed: 39814893 ]
- Mili-pirna-target (22-nt, comma) (Complex from Homo sapiens)
- Rna (5'-r(p*cp*ap*ap*gp*up*up*up*cp*cp*ap*up*gp*up*up*gp*ap*up*gp*gp*up*a)-3') (6 kDa, RNA from Homo sapiens)
- Rna (5'-r(p*up*up*ap*cp*cp*ap*up*cp*ap*ap*cp*ap*up*gp*gp*ap*ap*ap*cp*up*up*g)-3') (6 kDa, RNA from Homo sapiens)
- Piwi-like protein 2 (109 kDa, Protein from Mus musculus)
Cryo-EM Structure of MILI-piRNA-target (26-nt)
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 9ij3
Q-score: 0.463
Li Z, Xu Q, Zhong J, Zhang Y, Zhang T, Ying X, Lu X, Li X, Wan L, Xue J, Huang J, Zhen Y, Zhang Z, Wu J, Shen EZ
Nature (2025) [ DOI: doi:10.1038/s41586-024-08438-1 Pubmed: 39814893 ]
- Rna (26-mer) (8 kDa, RNA from Homo sapiens)
- Rna (25-mer) (8 kDa, RNA from Homo sapiens)
- Mili-pirna-target (26-nt) (Complex from Homo sapiens)
- Piwi-like protein 2 (109 kDa, Protein from Mus musculus)
- Manganese (ii) ion (54 Da, Ligand)
Cryo-EM Structure of MILI(K853A)-piRNA-target
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 9ij5
Q-score: 0.461
Li Z, Xu Q, Zhong J, Zhang Y, Zhang T, Ying X, Lu X, Li X, Wan L, Xue J, Huang J, Zhen Y, Zhang Z, Wu J, Shen EZ
Nature (2025) [ DOI: doi:10.1038/s41586-024-08438-1 Pubmed: 39814893 ]
- Rna (26-mer) (8 kDa, RNA from Homo sapiens)
- Rna (25-mer) (8 kDa, RNA from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Piwi-like protein 2 (109 kDa, Protein from Mus musculus)
- Mili(k853a)-pirna-target (Complex from Homo sapiens)
Structure of the FADD/Caspase-8/cFLIP death effector domain assembly
Resolution: 3.66 Å
EM Method: Single-particle
Fitted PDBs: 8yni
Q-score: 0.403
Yang CY, Tseng YC, Tu YF, Kuo BJ, Hsu LC, Lien CI, Lin YS, Wang YT, Lu YC, Su TW, Lo YC, Lin SC
Nat Commun (2024) 15 pp. 8974-8974 [ DOI: doi:10.1038/s41467-024-53306-1 Pubmed: 39419969 ]
- Fadd/caspase-8/cflip death effector domain assembly (Complex from Homo sapiens)
- Casp8 and fadd-like apoptosis regulator subunit p43 (20 kDa, Protein from Homo sapiens)
- Fas-associated death domain protein (24 kDa, Protein from Homo sapiens)
- Caspase-8 subunit p10 (55 kDa, Protein from Homo sapiens)