Cryo-EM structure of CXCL8 bound C-X-C chemokine receptor 1 in complex with Gi heterotrimer
Resolution: 3.41 Å
EM Method: Single-particle
Fitted PDBs: 8ic0
Q-score: 0.427
Ishimoto N, Park JH, Kawakami K, Tajiri M, Mizutani K, Akashi S, Tame JRH, Inoue A, Park SY
Nat Commun (2023) 14 pp. 4107-4107 [ DOI: doi:10.1038/s41467-023-39799-2 Pubmed: 37433790 ]
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Homo sapiens)
- Scfv16 (27 kDa, Protein from Mus musculus)
- C-x-c chemokine receptor type 1 (40 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (8 kDa, Protein from Homo sapiens)
- Cryo-em structure of human chemokine receptor 1 (150 kDa, Complex from Homo sapiens)
- Interleukin-8 (8 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (37 kDa, Protein from Homo sapiens)
Cryo-EM structure of human subnucleosome (closed form)
Resolution: 3.63 Å
EM Method: Single-particle
Fitted PDBs: 7x57
Q-score: 0.37
Nozawa K, Takizawa Y, Pierrakeas L, Sogawa-Fujiwara C, Saikusa K, Akashi S, Luk E, Kurumizaka H
PNAS (2022) 119 pp. e2206542119-e2206542119 [ Pubmed: 36322721 DOI: doi:10.1073/pnas.2206542119 ]
- Widom601 dna fw (145-mer) (44 kDa, DNA from synthetic construct)
- Widom601 dna rv (145-mer) (44 kDa, DNA from synthetic construct)
- Widom601 dna fw (145-mer),widom601 dna rw (145-mer) (Complex from synthetic construct)
- Histone h3.1,histone h4 (Complex from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Cryo-em structure of human subnucleosome (closed form) (Complex)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
Cryo-EM structure of human subnucleosome (open form)
Resolution: 3.93 Å
EM Method: Single-particle
Fitted PDBs: 7x58
Q-score: 0.35
Nozawa K, Takizawa Y, Pierrakeas L, Sogawa-Fujiwara C, Saikusa K, Akashi S, Luk E, Kurumizaka H
PNAS (2022) 119 pp. e2206542119-e2206542119 [ Pubmed: 36322721 DOI: doi:10.1073/pnas.2206542119 ]
- Widom601 dna fw (145-mer) (44 kDa, DNA from synthetic construct)
- Cryo-em structure of human subnucleosome (open form) (Complex)
- Widom601 dna fw (145-mer),widom601 dna rv (145-mer) (Complex from synthetic construct)
- Widom601 dna rv (145-mer) (44 kDa, DNA from synthetic construct)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h3.1,histone h4 (Complex from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
Cryo-EM structure of human subnucleosome (intermediate form)
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 7yoz
Q-score: 0.246
Nozawa K, Takizawa Y, Pierrakeas L, Sogawa-Fujiwara C, Saikusa K, Akashi S, Luk E, Kurumizaka H
PNAS (2022) 119 pp. e2206542119-e2206542119 [ Pubmed: 36322721 DOI: doi:10.1073/pnas.2206542119 ]
- Widom601 dna fw (145-mer) (44 kDa, DNA from synthetic construct)
- Cryo-em structure of human subnucleosome (intermediate form) (Complex)
- Widom601 dna fw (145-mer),widom601 dna rv (145-mer) (Complex from synthetic construct)
- Widom601 dna rv (145-mer) (44 kDa, DNA from synthetic construct)
- Histone h3.1,histone h4 (Complex from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
Detergent-solubilized E. coli RseP in complex with Fab
Imaizumi Y, Takanuki K, Miyake T, Takemoto M, Hirata K, Hirose M, Oi R, Kobayashi T, Miyoshi K, Aruga R, Yokoyama T, Katagiri S, Matsuura H, Iwasaki K, Kato T, Kaneko MK, Kato Y, Tajiri M, Akashi S, Nureki O, Hizukuri Y, Akiyama Y, Nogi T
Sci Adv (2022) 8 pp. eabp9011-eabp9011 [ DOI: doi:10.1126/sciadv.abp9011 Pubmed: 36001659 ]
- Fab (Complex from Mus musculus)
- Heavy chain of fab (Protein from Mus musculus)
- Rsep (Protein from Escherichia coli)
- Binary complex of e. coli rsep with fab (Complex)
- Rsep (Complex from Escherichia coli)
- Light chain of fab (Protein from Mus musculus)
Deterget-solubilized E. coli RseP(L358C) mutant in complex with Fab
Imaizumi Y, Takanuki K, Miyake T, Takemoto M, Hirata K, Hirose M, Oi R, Kobayashi T, Miyoshi K, Aruga R, Yokoyama T, Katagiri S, Matsuura H, Iwasaki K, Kato T, Kaneko MK, Kato Y, Tajiri M, Akashi S, Nureki O, Hizukuri Y, Akiyama Y, Nogi T
Sci Adv (2022) 8 pp. eabp9011-eabp9011 [ DOI: doi:10.1126/sciadv.abp9011 Pubmed: 36001659 ]
- Binary complex of e. coli rsep(l358c) mutant with fab (Complex)
- Fab (Complex from Mus musculus)
- E. coli rsep(l358c) mutant (Protein from Escherichia coli)
- Heavy chain of fab (Protein from Mus musculus)
- Rsep (Complex from Escherichia coli)
- Light chain of fab (Protein from Mus musculus)
Mayanagi K, Saikusa K, Miyazaki N, Akashi S, Iwasaki K, Nishimura Y, Morikawa K, Tsunaka Y
Sci Rep (2019) 9 pp. 10183-10183 [ DOI: doi:10.1038/s41598-019-46617-7 Pubmed: 31308435 ]
- Histone h4 (Complex from Homo sapiens)
- 112bp 601 dna (Complex from Homo sapiens)
- 112-bp octasome/paid (200 kDa, Complex from Homo sapiens)
- Histone h2b (Complex from Homo sapiens)
- Histone h2a (Complex from Homo sapiens)
- Histone h3.1 (Complex from Homo sapiens)
- Mid-paid (Complex from Homo sapiens)
Mayanagi K, Saikusa K, Miyazaki N, Akashi S, Iwasaki K, Nishimura Y, Morikawa K, Tsunaka Y
Sci Rep (2019) 9 pp. 10183-10183 [ DOI: doi:10.1038/s41598-019-46617-7 Pubmed: 31308435 ]
- 112-bp octasome/dna complex (200 kDa, Complex from Homo sapiens)
- Histone h4 (Complex from Homo sapiens)
- 112bp 601 dna (Complex from Homo sapiens)
- Histone h2b (Complex from Homo sapiens)
- Histone h2a (Complex from Homo sapiens)
- Histone h3.1 (Complex from Homo sapiens)
112-bp octasome/Mid-pAID complex
Mayanagi K, Saikusa K, Miyazaki N, Akashi S, Iwasaki K, Nishimura Y, Morikawa K, Tsunaka Y
Sci Rep (2019) 9 pp. 10183-10183 [ DOI: doi:10.1038/s41598-019-46617-7 Pubmed: 31308435 ]
- Histone h4 (Complex from Homo sapiens)
- 112bp 601 dna (Complex from Homo sapiens)
- Histone h2b (Complex from Homo sapiens)
- Histone h2a (Complex from Homo sapiens)
- Histone h3.1 (Complex from Homo sapiens)
- Mid-paid (Complex from Homo sapiens)
- 112-bp octasome/mid-paid (200 kDa, Complex from Homo sapiens)
Mayanagi K, Saikusa K, Miyazaki N, Akashi S, Iwasaki K, Nishimura Y, Morikawa K, Tsunaka Y
To Be Published
- Histone h4 (Complex from Homo sapiens)
- 112bp 601 dna (Complex from Homo sapiens)
- 112-bp octasome/paid (200 kDa, Complex from Homo sapiens)
- Histone h2b (Complex from Homo sapiens)
- Histone h2a (Complex from Homo sapiens)
- Histone h3.1 (Complex from Homo sapiens)
- Mid-paid (Complex from Homo sapiens)