Cryo-EM structure of human subnucleosome (closed form)
Resolution: 3.63 Å
EM Method: Single-particle
Fitted PDBs: 7x57
Q-score: 0.37
Nozawa K, Takizawa Y, Pierrakeas L, Sogawa-Fujiwara C, Saikusa K, Akashi S, Luk E, Kurumizaka H
PNAS (2022) 119 pp. e2206542119-e2206542119 [ Pubmed: 36322721 DOI: doi:10.1073/pnas.2206542119 ]
- Widom601 dna fw (145-mer) (44 kDa, DNA from synthetic construct)
- Widom601 dna rv (145-mer) (44 kDa, DNA from synthetic construct)
- Widom601 dna fw (145-mer),widom601 dna rw (145-mer) (Complex from synthetic construct)
- Histone h3.1,histone h4 (Complex from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Cryo-em structure of human subnucleosome (closed form) (Complex)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
Cryo-EM structure of human subnucleosome (open form)
Resolution: 3.93 Å
EM Method: Single-particle
Fitted PDBs: 7x58
Q-score: 0.35
Nozawa K, Takizawa Y, Pierrakeas L, Sogawa-Fujiwara C, Saikusa K, Akashi S, Luk E, Kurumizaka H
PNAS (2022) 119 pp. e2206542119-e2206542119 [ Pubmed: 36322721 DOI: doi:10.1073/pnas.2206542119 ]
- Widom601 dna fw (145-mer) (44 kDa, DNA from synthetic construct)
- Cryo-em structure of human subnucleosome (open form) (Complex)
- Widom601 dna fw (145-mer),widom601 dna rv (145-mer) (Complex from synthetic construct)
- Widom601 dna rv (145-mer) (44 kDa, DNA from synthetic construct)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h3.1,histone h4 (Complex from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
Cryo-EM structure of human subnucleosome (intermediate form)
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 7yoz
Q-score: 0.246
Nozawa K, Takizawa Y, Pierrakeas L, Sogawa-Fujiwara C, Saikusa K, Akashi S, Luk E, Kurumizaka H
PNAS (2022) 119 pp. e2206542119-e2206542119 [ Pubmed: 36322721 DOI: doi:10.1073/pnas.2206542119 ]
- Widom601 dna fw (145-mer) (44 kDa, DNA from synthetic construct)
- Cryo-em structure of human subnucleosome (intermediate form) (Complex)
- Widom601 dna fw (145-mer),widom601 dna rv (145-mer) (Complex from synthetic construct)
- Widom601 dna rv (145-mer) (44 kDa, DNA from synthetic construct)
- Histone h3.1,histone h4 (Complex from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
Mayanagi K, Saikusa K, Miyazaki N, Akashi S, Iwasaki K, Nishimura Y, Morikawa K, Tsunaka Y
Sci Rep (2019) 9 pp. 10183-10183 [ DOI: doi:10.1038/s41598-019-46617-7 Pubmed: 31308435 ]
- Histone h4 (Complex from Homo sapiens)
- 112bp 601 dna (Complex from Homo sapiens)
- 112-bp octasome/paid (200 kDa, Complex from Homo sapiens)
- Histone h2b (Complex from Homo sapiens)
- Histone h2a (Complex from Homo sapiens)
- Histone h3.1 (Complex from Homo sapiens)
- Mid-paid (Complex from Homo sapiens)
Mayanagi K, Saikusa K, Miyazaki N, Akashi S, Iwasaki K, Nishimura Y, Morikawa K, Tsunaka Y
Sci Rep (2019) 9 pp. 10183-10183 [ DOI: doi:10.1038/s41598-019-46617-7 Pubmed: 31308435 ]
- 112-bp octasome/dna complex (200 kDa, Complex from Homo sapiens)
- Histone h4 (Complex from Homo sapiens)
- 112bp 601 dna (Complex from Homo sapiens)
- Histone h2b (Complex from Homo sapiens)
- Histone h2a (Complex from Homo sapiens)
- Histone h3.1 (Complex from Homo sapiens)
112-bp octasome/Mid-pAID complex
Mayanagi K, Saikusa K, Miyazaki N, Akashi S, Iwasaki K, Nishimura Y, Morikawa K, Tsunaka Y
Sci Rep (2019) 9 pp. 10183-10183 [ DOI: doi:10.1038/s41598-019-46617-7 Pubmed: 31308435 ]
- Histone h4 (Complex from Homo sapiens)
- 112bp 601 dna (Complex from Homo sapiens)
- Histone h2b (Complex from Homo sapiens)
- Histone h2a (Complex from Homo sapiens)
- Histone h3.1 (Complex from Homo sapiens)
- Mid-paid (Complex from Homo sapiens)
- 112-bp octasome/mid-paid (200 kDa, Complex from Homo sapiens)
Mayanagi K, Saikusa K, Miyazaki N, Akashi S, Iwasaki K, Nishimura Y, Morikawa K, Tsunaka Y
Sci Rep (2019) 9 pp. 10183-10183 [ DOI: doi:10.1038/s41598-019-46617-7 Pubmed: 31308435 ]
- Histone h4 (Complex from Homo sapiens)
- 112bp 601 dna (Complex from Homo sapiens)
- Histone h2b (Complex from Homo sapiens)
- Histone h2a (Complex from Homo sapiens)
- Histone h3.1 (Complex from Homo sapiens)
- 112-bp hexasome (200 kDa, Complex from Homo sapiens)