Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7k8s
Q-score: 0.409
Barnes CO, Jette CA, Abernathy ME, Dam KA, Esswein SR, Gristick HB, Malyutin AG, Sharaf NG, Huey-Tubman KE, Lee YE, Robbiani DF, Nussenzweig MC, West Jr AP, Bjorkman PJ
Nature (2020) 588 pp. 682-687 [ Pubmed: 33045718 DOI: doi:10.1038/s41586-020-2852-1 ]
- Ternary complex of sars-cov-2 s 2p glycoprotein with fab fragments of the human neutralizing antibody c002 (700 kDa, Complex)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Neutralizing antibody c002 (Complex from Homo sapiens)
- C002 fab light chain (23 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 s 2p glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
- C002 fab heavy chain (25 kDa, Protein from Homo sapiens)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7k8t
Q-score: 0.407
Barnes CO, Jette CA, Abernathy ME, Dam KA, Esswein SR, Gristick HB, Malyutin AG, Sharaf NG, Huey-Tubman KE, Lee YE, Robbiani DF, Nussenzweig MC, West Jr AP, Bjorkman PJ
Nature (2020) 588 pp. 682-687 [ Pubmed: 33045718 DOI: doi:10.1038/s41586-020-2852-1 ]
- Ternary complex of sars-cov-2 s 2p glycoprotein with fab fragments of the human neutralizing antibody c002 (700 kDa, Complex)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Neutralizing antibody c002 (Complex from Homo sapiens)
- C002 fab light chain (23 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 s 2p glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
- C002 fab heavy chain (25 kDa, Protein from Homo sapiens)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7k8u
Q-score: 0.38
Barnes CO, Jette CA, Abernathy ME, Dam KA, Esswein SR, Gristick HB, Malyutin AG, Sharaf NG, Huey-Tubman KE, Lee YE, Robbiani DF, Nussenzweig MC, West Jr AP, Bjorkman PJ
Nature (2020) 588 pp. 682-687 [ Pubmed: 33045718 DOI: doi:10.1038/s41586-020-2852-1 ]
- C104 fab light chain (23 kDa, Protein from Homo sapiens)
- Neutralizing antibody c104 (Complex from Homo sapiens)
- C104 fab heavy chain (25 kDa, Protein from Homo sapiens)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Ternary complex of sars-cov-2 s 2p glycoprotein with fab fragments of the human neutralizing antibody c104 (700 kDa, Complex)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 s 2p glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7k8v
Q-score: 0.262
Barnes CO, Jette CA, Abernathy ME, Dam KA, Esswein SR, Gristick HB, Malyutin AG, Sharaf NG, Huey-Tubman KE, Lee YE, Robbiani DF, Nussenzweig MC, West Jr AP, Bjorkman PJ
Nature (2020) 588 pp. 682-687 [ Pubmed: 33045718 DOI: doi:10.1038/s41586-020-2852-1 ]
- C110 fab light chain (23 kDa, Protein from Homo sapiens)
- Ternary complex of sars-cov-2 s 2p trimer with human neutralizing antibody fab fragment c110 (720 kDa, Complex)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- C110 fab heavy chain (25 kDa, Protein from Homo sapiens)
- Neutralizing antibody fab fragment c110 (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 s 2p glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7k8w
Q-score: 0.344
Barnes CO, Jette CA, Abernathy ME, Dam KA, Esswein SR, Gristick HB, Malyutin AG, Sharaf NG, Huey-Tubman KE, Lee YE, Robbiani DF, Nussenzweig MC, West Jr AP, Bjorkman PJ
Nature (2020) 588 pp. 682-687 [ Pubmed: 33045718 DOI: doi:10.1038/s41586-020-2852-1 ]
- Neutralizing antibody c119 (Complex from Homo sapiens)
- Ternary complex of sars-cov-2 s 2p glycoprotein with fab fragments of the human neutralizing antibody c119 (700 kDa, Complex)
- C119 fab heavy chain (25 kDa, Protein from Homo sapiens)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- C119 fab light chain (22 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 s 2p glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7k8x
Q-score: 0.29
Barnes CO, Jette CA, Abernathy ME, Dam KA, Esswein SR, Gristick HB, Malyutin AG, Sharaf NG, Huey-Tubman KE, Lee YE, Robbiani DF, Nussenzweig MC, West Jr AP, Bjorkman PJ
Nature (2020) 588 pp. 682-687 [ Pubmed: 33045718 DOI: doi:10.1038/s41586-020-2852-1 ]
- Ternary complex of sars-cov-2 s 2p trimer with human neutralizing antibody fab fragment c121 (Complex)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- C121 fab heavy chain (25 kDa, Protein from Homo sapiens)
- Neutralizing antibody fab fragment c121 (Complex from Homo sapiens)
- C121 fab light chain (22 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 s 2p glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 7k8y
Q-score: 0.238
Barnes CO, Jette CA, Abernathy ME, Dam KA, Esswein SR, Gristick HB, Malyutin AG, Sharaf NG, Huey-Tubman KE, Lee YE, Robbiani DF, Nussenzweig MC, West Jr AP, Bjorkman PJ
Nature (2020) 588 pp. 682-687 [ Pubmed: 33045718 DOI: doi:10.1038/s41586-020-2852-1 ]
- Ternary complex of sars-cov-2 s 2p trimer with human neutralizing antibody fab fragment c121 (state 2) (720 kDa, Complex)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- C121 fab heavy chain (25 kDa, Protein from Homo sapiens)
- Neutralizing antibody fab fragment c121 (Complex from Homo sapiens)
- C121 fab light chain (22 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 s 2p glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7k8z
Q-score: 0.395
Barnes CO, Jette CA, Abernathy ME, Dam KA, Esswein SR, Gristick HB, Malyutin AG, Sharaf NG, Huey-Tubman KE, Lee YE, Robbiani DF, Nussenzweig MC, West Jr AP, Bjorkman PJ
Nature (2020) 588 pp. 682-687 [ Pubmed: 33045718 DOI: doi:10.1038/s41586-020-2852-1 ]
- C135 fab light chain (23 kDa, Protein from Homo sapiens)
- Neutralizing antibody c135 (Complex from Homo sapiens)
- C135 fab heavy chain (24 kDa, Protein from Homo sapiens)
- Ternary complex of sars-cov-2 s 2p glycoprotein with fab fragments of the human neutralizing antibody c135 (700 kDa, Complex)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 s 2p glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
Resolution: 3.24 Å
EM Method: Single-particle
Fitted PDBs: 7k90
Q-score: 0.455
Barnes CO, Jette CA, Abernathy ME, Dam KA, Esswein SR, Gristick HB, Malyutin AG, Sharaf NG, Huey-Tubman KE, Lee YE, Robbiani DF, Nussenzweig MC, West Jr AP, Bjorkman PJ
Nature (2020) 588 pp. 682-687 [ Pubmed: 33045718 DOI: doi:10.1038/s41586-020-2852-1 ]
- C144 fab light chain (22 kDa, Protein from Homo sapiens)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- C144 fab heavy chain (26 kDa, Protein from Homo sapiens)
- Ternary complex of sars-cov-2 s 6p trimer with human neutralizing antibody fab fragment c144 (720 kDa, Complex)
- Neutralizing antibody fab fragment c144 (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 s 2p glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 S 2P negative-stain EM
Barnes CO, West Jr AP, Huey-Tubman KE, Hoffmann MAG, Sharaf NG, Hoffman PR, Koranda N, Gristick HB, Gaebler C, Muecksch F, Lorenzi JCC, Finkin S, Hagglof T, Hurley A, Millard KG, Weisblum Y, Schmidt F, Hatziioannou T, Bieniasz PD, Caskey M, Robbiani DF, Nussenzweig MC, Bjorkman PJ
Cell (2020) 182 pp. 828-842.e16 [ DOI: doi:10.1016/j.cell.2020.06.025 Pubmed: 32645326 ]