Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7k8s
Q-score: 0.409
Barnes CO, Jette CA, Abernathy ME, Dam KA, Esswein SR, Gristick HB, Malyutin AG, Sharaf NG, Huey-Tubman KE, Lee YE, Robbiani DF, Nussenzweig MC, West Jr AP, Bjorkman PJ
Nature (2020) 588 pp. 682-687 [ Pubmed: 33045718 DOI: doi:10.1038/s41586-020-2852-1 ]
- Ternary complex of sars-cov-2 s 2p glycoprotein with fab fragments of the human neutralizing antibody c002 (700 kDa, Complex)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Neutralizing antibody c002 (Complex from Homo sapiens)
- C002 fab light chain (23 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 s 2p glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
- C002 fab heavy chain (25 kDa, Protein from Homo sapiens)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7k8t
Q-score: 0.407
Barnes CO, Jette CA, Abernathy ME, Dam KA, Esswein SR, Gristick HB, Malyutin AG, Sharaf NG, Huey-Tubman KE, Lee YE, Robbiani DF, Nussenzweig MC, West Jr AP, Bjorkman PJ
Nature (2020) 588 pp. 682-687 [ Pubmed: 33045718 DOI: doi:10.1038/s41586-020-2852-1 ]
- Ternary complex of sars-cov-2 s 2p glycoprotein with fab fragments of the human neutralizing antibody c002 (700 kDa, Complex)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Neutralizing antibody c002 (Complex from Homo sapiens)
- C002 fab light chain (23 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 s 2p glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
- C002 fab heavy chain (25 kDa, Protein from Homo sapiens)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7k8u
Q-score: 0.38
Barnes CO, Jette CA, Abernathy ME, Dam KA, Esswein SR, Gristick HB, Malyutin AG, Sharaf NG, Huey-Tubman KE, Lee YE, Robbiani DF, Nussenzweig MC, West Jr AP, Bjorkman PJ
Nature (2020) 588 pp. 682-687 [ Pubmed: 33045718 DOI: doi:10.1038/s41586-020-2852-1 ]
- C104 fab light chain (23 kDa, Protein from Homo sapiens)
- Neutralizing antibody c104 (Complex from Homo sapiens)
- C104 fab heavy chain (25 kDa, Protein from Homo sapiens)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Ternary complex of sars-cov-2 s 2p glycoprotein with fab fragments of the human neutralizing antibody c104 (700 kDa, Complex)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 s 2p glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7k8v
Q-score: 0.262
Barnes CO, Jette CA, Abernathy ME, Dam KA, Esswein SR, Gristick HB, Malyutin AG, Sharaf NG, Huey-Tubman KE, Lee YE, Robbiani DF, Nussenzweig MC, West Jr AP, Bjorkman PJ
Nature (2020) 588 pp. 682-687 [ Pubmed: 33045718 DOI: doi:10.1038/s41586-020-2852-1 ]
- C110 fab light chain (23 kDa, Protein from Homo sapiens)
- Ternary complex of sars-cov-2 s 2p trimer with human neutralizing antibody fab fragment c110 (720 kDa, Complex)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- C110 fab heavy chain (25 kDa, Protein from Homo sapiens)
- Neutralizing antibody fab fragment c110 (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 s 2p glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7k8w
Q-score: 0.344
Barnes CO, Jette CA, Abernathy ME, Dam KA, Esswein SR, Gristick HB, Malyutin AG, Sharaf NG, Huey-Tubman KE, Lee YE, Robbiani DF, Nussenzweig MC, West Jr AP, Bjorkman PJ
Nature (2020) 588 pp. 682-687 [ Pubmed: 33045718 DOI: doi:10.1038/s41586-020-2852-1 ]
- Neutralizing antibody c119 (Complex from Homo sapiens)
- Ternary complex of sars-cov-2 s 2p glycoprotein with fab fragments of the human neutralizing antibody c119 (700 kDa, Complex)
- C119 fab heavy chain (25 kDa, Protein from Homo sapiens)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- C119 fab light chain (22 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 s 2p glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7k8x
Q-score: 0.29
Barnes CO, Jette CA, Abernathy ME, Dam KA, Esswein SR, Gristick HB, Malyutin AG, Sharaf NG, Huey-Tubman KE, Lee YE, Robbiani DF, Nussenzweig MC, West Jr AP, Bjorkman PJ
Nature (2020) 588 pp. 682-687 [ Pubmed: 33045718 DOI: doi:10.1038/s41586-020-2852-1 ]
- Ternary complex of sars-cov-2 s 2p trimer with human neutralizing antibody fab fragment c121 (Complex)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- C121 fab heavy chain (25 kDa, Protein from Homo sapiens)
- Neutralizing antibody fab fragment c121 (Complex from Homo sapiens)
- C121 fab light chain (22 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 s 2p glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 7k8y
Q-score: 0.238
Barnes CO, Jette CA, Abernathy ME, Dam KA, Esswein SR, Gristick HB, Malyutin AG, Sharaf NG, Huey-Tubman KE, Lee YE, Robbiani DF, Nussenzweig MC, West Jr AP, Bjorkman PJ
Nature (2020) 588 pp. 682-687 [ Pubmed: 33045718 DOI: doi:10.1038/s41586-020-2852-1 ]
- Ternary complex of sars-cov-2 s 2p trimer with human neutralizing antibody fab fragment c121 (state 2) (720 kDa, Complex)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- C121 fab heavy chain (25 kDa, Protein from Homo sapiens)
- Neutralizing antibody fab fragment c121 (Complex from Homo sapiens)
- C121 fab light chain (22 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 s 2p glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7k8z
Q-score: 0.395
Barnes CO, Jette CA, Abernathy ME, Dam KA, Esswein SR, Gristick HB, Malyutin AG, Sharaf NG, Huey-Tubman KE, Lee YE, Robbiani DF, Nussenzweig MC, West Jr AP, Bjorkman PJ
Nature (2020) 588 pp. 682-687 [ Pubmed: 33045718 DOI: doi:10.1038/s41586-020-2852-1 ]
- C135 fab light chain (23 kDa, Protein from Homo sapiens)
- Neutralizing antibody c135 (Complex from Homo sapiens)
- C135 fab heavy chain (24 kDa, Protein from Homo sapiens)
- Ternary complex of sars-cov-2 s 2p glycoprotein with fab fragments of the human neutralizing antibody c135 (700 kDa, Complex)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 s 2p glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
Resolution: 3.24 Å
EM Method: Single-particle
Fitted PDBs: 7k90
Q-score: 0.455
Barnes CO, Jette CA, Abernathy ME, Dam KA, Esswein SR, Gristick HB, Malyutin AG, Sharaf NG, Huey-Tubman KE, Lee YE, Robbiani DF, Nussenzweig MC, West Jr AP, Bjorkman PJ
Nature (2020) 588 pp. 682-687 [ Pubmed: 33045718 DOI: doi:10.1038/s41586-020-2852-1 ]
- C144 fab light chain (22 kDa, Protein from Homo sapiens)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- C144 fab heavy chain (26 kDa, Protein from Homo sapiens)
- Ternary complex of sars-cov-2 s 6p trimer with human neutralizing antibody fab fragment c144 (720 kDa, Complex)
- Neutralizing antibody fab fragment c144 (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 s 2p glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)