Backbone model of de novo-designed chlorophyll-binding nanocage O32-15
Resolution: 6.5 Å
EM Method: Single-particle
Fitted PDBs: 8glt
Q-score: 0.213
Ennist NM, Wang S, Kennedy MA, Curti M, Sutherland GA, Vasilev C, Redler RL, Maffeis V, Shareef S, Sica AV, Hua AS, Deshmukh AP, Moyer AP, Hicks DR, Swartz AZ, Cacho RA, Novy N, Bera AK, Kang A, Sankaran B, Johnson MP, Phadkule A, Reppert M, Ekiert D, Bhabha G, Stewart L, Caram JR, Stoddard BL, Romero E, Hunter CN, Baker D
Nat Chem Biol (2024) 20 pp. 906-915 [ Pubmed: 38831036 DOI: doi:10.1038/s41589-024-01626-0 ]
Computationally Designed, Expandable O4 Octahedral Handshake Nanocage
Huddy TF, Hsia Y, Kibler RD, Xu J, Bethel N, Nagarajan D, Redler R, Leung PJY, Weidle C, Courbet A, Yang EC, Bera AK, Coudray N, Calise SJ, Davila-Hernandez FA, Han HL, Carr KD, Li Z, McHugh R, Reggiano G, Kang A, Sankaran B, Dickinson MS, Coventry B, Brunette TJ, Liu Y, Dauparas J, Borst AJ, Ekiert D, Kollman JM, Bhabha G, Baker D
Nature (2024) 627 pp. 898-904 [ DOI: doi:10.1038/s41586-024-07188-4 Pubmed: 38480887 ]
Computational Designed Nanocage O43_129
Resolution: 6.77 Å
EM Method: Single-particle
Fitted PDBs: 8v2d
Q-score: 0.201
Huddy TF, Hsia Y, Kibler RD, Xu J, Bethel N, Nagarajan D, Redler R, Leung PJY, Weidle C, Courbet A, Yang EC, Bera AK, Coudray N, Calise SJ, Davila-Hernandez FA, Han HL, Carr KD, Li Z, McHugh R, Reggiano G, Kang A, Sankaran B, Dickinson MS, Coventry B, Brunette TJ, Liu Y, Dauparas J, Borst AJ, Ekiert D, Kollman JM, Bhabha G, Baker D
Nature (2024) 627 pp. 898-904 [ DOI: doi:10.1038/s41586-024-07188-4 Pubmed: 38480887 ]
- O43_129 component b (34 kDa, Protein from synthetic construct)
- O43_129 component a (33 kDa, Protein from synthetic construct)
- Nanocage o43_129 (1 MDa, Complex from unidentified)
Computational Designed Nanocage O43_129_+4
Resolution: 6.4 Å
EM Method: Single-particle
Fitted PDBs: 8v3b
Q-score: 0.217
Huddy TF, Hsia Y, Kibler RD, Xu J, Bethel N, Nagarajan D, Redler R, Leung PJY, Weidle C, Courbet A, Yang EC, Bera AK, Coudray N, Calise SJ, Davila-Hernandez FA, Han HL, Carr KD, Li Z, McHugh R, Reggiano G, Kang A, Sankaran B, Dickinson MS, Coventry B, Brunette TJ, Liu Y, Dauparas J, Borst AJ, Ekiert D, Kollman JM, Bhabha G, Baker D
Nature (2024) 627 pp. 898-904 [ DOI: doi:10.1038/s41586-024-07188-4 Pubmed: 38480887 ]
- Computational designed nanocage o43_129_+4 (Complex from unidentified)
- O43_129_+4 component a (33 kDa, Protein from synthetic construct)
- O43_129_+4 component b (46 kDa, Protein from synthetic construct)
C4HR1_8r_shift5: Extendable repeat protein fiber
Bethel NP, Borst AJ, Parmeggiani F, Bick MJ, Brunette TJ, Nguyen H, Kang A, Bera AK, Carter L, Miranda MC, Kibler RD, Lamb M, Li X, Sankaran B, Baker D
Nat Chem (2023) 15 pp. 1664-1671 [ DOI: doi:10.1038/s41557-023-01314-x Pubmed: 37667012 ]
- C4hr1_8r_shift5 (42 kDa, Complex from unidentified)
- C4hr1_8r_shift5 (Protein from unidentified)
CryoEM map of a de novo designed octahedral nanocage with programmable volume; design cage_O4_34
Huddy TF, Hsia Y, Kibler RD, Xu J, Bethel N, Nagarajan D, Redler R, Leung PJY, Courbet A, Yang EC, Bera AK, Coudray N, Calise SJ, Davila-Hernandez FA, Weidle C, Han HL, Li Z, McHugh R, Reggiano G, Kang A, Sankaran B, Dickinson MS, Coventry B, Brunette TJ, Liu Y, Dauparas J, Borst AJ, Ekiert D, Kollman JM, Bhabha G, Baker D
bioRxiv (2023) [ DOI: doi:10.1101/2023.06.09.544258 Pubmed: 37333359 ]
- Cage_o4_34 (Complex from synthetic construct)
- Cage_o4_34 (Protein from synthetic construct)
Cryo-EM map of synthetic cage_O3_10 reconstructed without symmetry (C1)
Huddy TF, Hsia Y, Kibler RD, Xu J, Bethel N, Nagarajan D, Redler R, Leung PJY, Weidle C, Courbet A, Yang EC, Bera AK, Coudray N, Calise SJ, Davila-Hernandez FA, Han HL, Carr KD, Li Z, McHugh R, Reggiano G, Kang A, Sankaran B, Dickinson MS, Coventry B, Brunette TJ, Liu Y, Dauparas J, Borst AJ, Ekiert D, Kollman JM, Bhabha G, Baker D
Nature (2024) 627 pp. 898-904 [ DOI: doi:10.1038/s41586-024-07188-4 Pubmed: 38480887 ]
Cryo-EM map of synthetic cage_O3_10 reconstructed with O symmetry
Huddy TF, Hsia Y, Kibler RD, Xu J, Bethel N, Nagarajan D, Redler R, Leung PJY, Weidle C, Courbet A, Yang EC, Bera AK, Coudray N, Calise SJ, Davila-Hernandez FA, Han HL, Carr KD, Li Z, McHugh R, Reggiano G, Kang A, Sankaran B, Dickinson MS, Coventry B, Brunette TJ, Liu Y, Dauparas J, Borst AJ, Ekiert D, Kollman JM, Bhabha G, Baker D
Nature (2024) 627 pp. 898-904 [ DOI: doi:10.1038/s41586-024-07188-4 Pubmed: 38480887 ]
Huddy TF, Hsia Y, Kibler RD, Xu J, Bethel N, Nagarajan D, Redler R, Leung PJY, Courbet A, Yang EC, Bera AK, Coudray N, Calise SJ, Davila-Hernandez FA, Weidle C, Han HL, Li Z, McHugh R, Reggiano G, Kang A, Sankaran B, Dickinson MS, Coventry B, Brunette TJ, Liu Y, Dauparas J, Borst AJ, Ekiert D, Kollman JM, Bhabha G, Baker D
bioRxiv (2023) [ DOI: doi:10.1101/2023.06.09.544258 Pubmed: 37333359 ]
Huddy TF, Hsia Y, Kibler RD, Xu J, Bethel N, Nagarajan D, Redler R, Leung PJY, Weidle C, Courbet A, Yang EC, Bera AK, Coudray N, Calise SJ, Davila-Hernandez FA, Han HL, Carr KD, Li Z, McHugh R, Reggiano G, Kang A, Sankaran B, Dickinson MS, Coventry B, Brunette TJ, Liu Y, Dauparas J, Borst AJ, Ekiert D, Kollman JM, Bhabha G, Baker D
Nature (2024) 627 pp. 898-904 [ DOI: doi:10.1038/s41586-024-07188-4 Pubmed: 38480887 ]