MiniCoV-ADDomer, a SARS-CoV-2 epitope presenting viral like particle
Resolution: 2.36 Å
EM Method: Single-particle
Fitted PDBs: 8c9n
Q-score: 0.544
Buzas D, Bunzel AH, Staufer O, Milodowski EJ, Edmunds GL, Bufton JC, Vidana Mateo BV, Yadav SKN, Gupta K, Fletcher C, Williamson MK, Harrison A, Borucu U, Capin J, Francis O, Balchin G, Hall S, Vega MV, Durbesson F, Lingappa S, Vincentelli R, Roe J, Wooldridge L, Burt R, Anderson RJL, Mulholland AJ, Hare J, Bailey M, Davidson AD, Finn A, Morgan D, Mann J, Spatz J, Garzoni F, Schaffitzel C, Berger I
Antib Ther (2023) 6 pp. 277-297 [ DOI: doi:10.1093/abt/tbad024 Pubmed: 38075238 ]
Resolution: 2.39 Å
EM Method: Single-particle
Fitted PDBs: 7qus
Q-score: 0.624
Buchanan CJ, Gaunt B, Harrison PJ, Yang Y, Liu J, Khan A, Giltrap AM, Le Bas A, Ward PN, Gupta K, Dumoux M, Tan TK, Schimaski L, Daga S, Picchiotti N, Baldassarri M, Benetti E, Fallerini C, Fava F, Giliberti A, Koukos PI, Davy MJ, Lakshminarayanan A, Xue X, Papadakis G, Deimel LP, Casablancas-Antras V, Claridge TDW, Bonvin AMJJ, Sattentau QJ, Furini S, Gori M, Huo J, Owens RJ, Schaffitzel C, Berger I, Renieri A, Naismith JH, Baldwin AJ, Davis BG
Science (2022) 377 pp. eabm3125-eabm3125 [ Pubmed: 35737812 DOI: doi:10.1126/science.abm3125 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein,fibritin (139 kDa, Protein from Enterobacteria phage T4)
- Sars-cov-2 spike, c3 symmetry (Complex from Severe acute respiratory syndrome coronavirus 2)
- Linoleic acid (280 Da, Ligand)
SARS-CoV-2 Spike with ethylbenzamide-tri-iodo Siallyllactose, C3 symmetry
Resolution: 2.27 Å
EM Method: Single-particle
Fitted PDBs: 7qur
Q-score: 0.636
Buchanan CJ, Gaunt B, Harrison PJ, Yang Y, Liu J, Khan A, Giltrap AM, Le Bas A, Ward PN, Gupta K, Dumoux M, Tan TK, Schimaski L, Daga S, Picchiotti N, Baldassarri M, Benetti E, Fallerini C, Fava F, Giliberti A, Koukos PI, Davy MJ, Lakshminarayanan A, Xue X, Papadakis G, Deimel LP, Casablancas-Antras V, Claridge TDW, Bonvin AMJJ, Sattentau QJ, Furini S, Gori M, Huo J, Owens RJ, Schaffitzel C, Berger I, Renieri A, Naismith JH, Baldwin AJ, Davis BG
Science (2022) 377 pp. eabm3125-eabm3125 [ Pubmed: 35737812 DOI: doi:10.1126/science.abm3125 ]
- Water (18 Da, Ligand)
- Sars-cov-2 spike with ethylbenzamide-tri-iodo siallyllactose, c3 symmetry (Complex from Severe acute respiratory syndrome coronavirus 2)
- N-acetyl-alpha-neuraminic acid (309 Da, Ligand)
- 2,3,5-tris(iodanyl)benzamide (498 Da, Ligand)
- Linoleic acid (280 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein,fibritin (139 kDa, Protein from Enterobacteria phage T4)
SARS-CoV-2 Spike with ethylbenzamide-tri-iodo Siallyllactose, C1 symmetry
Buchanan CJ, Gaunt B, Harrison PJ, Yang Y, Liu J, Khan A, Giltrap AM, Le Bas A, Ward PN, Gupta K, Dumoux M, Tan TK, Schimaski L, Daga S, Picchiotti N, Baldassarri M, Benetti E, Fallerini C, Fava F, Giliberti A, Koukos PI, Davy MJ, Lakshminarayanan A, Xue X, Papadakis G, Deimel LP, Casablancas-Antras V, Claridge TDW, Bonvin AMJJ, Sattentau QJ, Furini S, Gori M, Huo J, Owens RJ, Schaffitzel C, Berger I, Renieri A, Naismith JH, Baldwin AJ, Davis BG
Science (2022) 377 pp. eabm3125-eabm3125 [ Pubmed: 35737812 DOI: doi:10.1126/science.abm3125 ]
Buchanan CJ, Gaunt B, Harrison PJ, Yang Y, Liu J, Khan A, Giltrap AM, Le Bas A, Ward PN, Gupta K, Dumoux M, Tan TK, Schimaski L, Daga S, Picchiotti N, Baldassarri M, Benetti E, Fallerini C, Fava F, Giliberti A, Koukos PI, Davy MJ, Lakshminarayanan A, Xue X, Papadakis G, Deimel LP, Casablancas-Antras V, Claridge TDW, Bonvin AMJJ, Sattentau QJ, Furini S, Gori M, Huo J, Owens RJ, Schaffitzel C, Berger I, Renieri A, Naismith JH, Baldwin AJ, Davis BG
Science (2022) 377 pp. eabm3125-eabm3125 [ Pubmed: 35737812 DOI: doi:10.1126/science.abm3125 ]
SARS CoV-2 Spike protein, Bristol UK Deletion variant, Closed conformation, C3 symmetry
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7od3
Q-score: 0.622
Gupta K, Toelzer C, Williamson MK, Shoemark DK, Oliveira ASF, Matthews DA, Almuqrin A, Staufer O, Yadav SKN, Borucu U, Garzoni F, Fitzgerald D, Spatz J, Mulholland AJ, Davidson AD, Schaffitzel C, Berger I
Nat Commun (2022) 13 pp. 222-222 [ DOI: doi:10.1038/s41467-021-27881-6 Pubmed: 35017512 ]
- Sars cov-2 spike protein, bristol uk deletion variant, closed conformation, c3 symmetry (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Linoleic acid (280 Da, Ligand)