Resolution: 3.53 Å
EM Method: Single-particle
Fitted PDBs: 8f2u
Q-score: 0.408
Healy MD, McNally KE, Butkovic R, Chilton M, Kato K, Sacharz J, McConville C, Moody ERR, Shaw S, Planelles-Herrero VJ, Yadav SKN, Ross J, Borucu U, Palmer CS, Chen KE, Croll TI, Hall RJ, Caruana NJ, Ghai R, Nguyen THD, Heesom KJ, Saitoh S, Berger I, Schaffitzel C, Williams TA, Stroud DA, Derivery E, Collins BM, Cullen PJ
Cell (2023) 186 pp. 2219-2237.e29 [ Pubmed: 37172566 DOI: doi:10.1016/j.cell.2023.04.003 ]
- Comm domain-containing protein 10 (24 kDa, Protein from Homo sapiens)
- Coiled-coil domain-containing protein 93 (73 kDa, Protein from Homo sapiens)
- Comm domain-containing protein 2 (22 kDa, Protein from Homo sapiens)
- Comm domain-containing protein 4 (21 kDa, Protein from Homo sapiens)
- Comm domain-containing protein 8 (21 kDa, Protein from Homo sapiens)
- Comm domain-containing protein 5 (28 kDa, Protein from Homo sapiens)
- Comm domain-containing protein 6 (9 kDa, Protein from Homo sapiens)
- Coiled-coil domain-containing protein 22 (70 kDa, Protein from Homo sapiens)
- Comm domain-containing protein 3 (22 kDa, Protein from Homo sapiens)
- Comm domain-containing protein 9 (21 kDa, Protein from Homo sapiens)
- Human ccc complex (Complex from Homo sapiens)
- Comm domain-containing protein 1 (21 kDa, Protein from Homo sapiens)
- Comm domain-containing protein 7 (22 kDa, Protein from Homo sapiens)
SARS CoV-2 Spike protein, Bristol UK Deletion variant, Closed conformation, C3 symmetry
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7od3
Q-score: 0.622
Gupta K, Toelzer C, Williamson MK, Shoemark DK, Oliveira ASF, Matthews DA, Almuqrin A, Staufer O, Yadav SKN, Borucu U, Garzoni F, Fitzgerald D, Spatz J, Mulholland AJ, Davidson AD, Schaffitzel C, Berger I
Nat Commun (2022) 13 pp. 222-222 [ DOI: doi:10.1038/s41467-021-27881-6 Pubmed: 35017512 ]
- Sars cov-2 spike protein, bristol uk deletion variant, closed conformation, c3 symmetry (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Linoleic acid (280 Da, Ligand)
SARS CoV-2 Spike protein, Bristol UK Deletion variant, Closed conformation, C1 symmetry
Resolution: 3.03 Å
EM Method: Single-particle
Fitted PDBs: 7odl
Q-score: 0.595
Gupta K, Toelzer C, Williamson MK, Shoemark DK, Oliveira ASF, Matthews DA, Almuqrin A, Staufer O, Yadav SKN, Borucu U, Garzoni F, Fitzgerald D, Spatz J, Mulholland AJ, Davidson AD, Schaffitzel C, Berger I
Nat Commun (2022) 13 pp. 222-222 [ DOI: doi:10.1038/s41467-021-27881-6 Pubmed: 35017512 ]
- Sars cov-2 spike protein, bristol uk deletion variant, closed conformation, c1 symmetry (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Linoleic acid (280 Da, Ligand)
SARS CoV-2 Spike protein, Closed conformation, C1 symmetry
Resolution: 3.03 Å
EM Method: Single-particle
Fitted PDBs: 6zb4
Q-score: 0.587
Toelzer C, Gupta K, Yadav SKN, Borucu U, Davidson AD, Kavanagh Williamson M, Shoemark DK, Garzoni F, Staufer O, Milligan R, Capin J, Mulholland AJ, Spatz J, Fitzgerald D, Berger I, Schaffitzel C
Science (2020) 370 pp. 725-730 [ DOI: doi:10.1126/science.abd3255 Pubmed: 32958580 ]
- Sars cov-2 spike protein, closed conformation, c1 symmetry (540 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Linoleic acid (280 Da, Ligand)
SARS CoV-2 Spike protein, Closed conformation, C3 symmetry
Resolution: 2.85 Å
EM Method: Single-particle
Fitted PDBs: 6zb5
Q-score: 0.619
Toelzer C, Gupta K, Yadav SKN, Borucu U, Davidson AD, Kavanagh Williamson M, Shoemark DK, Garzoni F, Staufer O, Milligan R, Capin J, Mulholland AJ, Spatz J, Fitzgerald D, Berger I, Schaffitzel C
Science (2020) 370 pp. 725-730 [ DOI: doi:10.1126/science.abd3255 Pubmed: 32958580 ]
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Linoleic acid (280 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars cov-2 spike protein, closed conformation, c3 symmetry (540 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
SARS CoV-2 Spike protein, Open conformation
Toelzer C, Gupta K, Yadav SKN, Borucu U, Davidson AD, Kavanagh Williamson M, Shoemark DK, Garzoni F, Staufer O, Milligan R, Capin J, Mulholland AJ, Spatz J, Fitzgerald D, Berger I, Schaffitzel C
Science (2020) 370 pp. 725-730 [ DOI: doi:10.1126/science.abd3255 Pubmed: 32958580 ]
cryoEM structure of bacterial holo-translocon
Resolution: 14.0 Å
EM Method: Single-particle
Fitted PDBs: 5mg3
Q-score: 0.034
Botte M, Zaccai NR, Nijeholt JL, Martin R, Knoops K, Papai G, Zou J, Deniaud A, Karuppasamy M, Jiang Q, Roy AS, Schulten K, Schultz P, Rappsilber J, Zaccai G, Berger I, Collinson I, Schaffitzel C
Sci Rep (2016) 6 pp. 38399-38399 [ DOI: doi:10.1038/srep38399 Pubmed: 27924919 ]
- Protein translocase subunit secy (50 kDa, Protein from Escherichia coli)
- Protein translocase subunit secf (35 kDa, Protein from Escherichia coli)
- Membrane protein insertase yidc (62 kDa, Protein from Escherichia coli)
- Protein-export membrane protein secg (14 kDa, Protein from Escherichia coli)
- Bacterial holo-translocon (htl) (250 kDa, Complex from Escherichia coli)
- Protein translocase subunit sece (15 kDa, Protein from Escherichia coli)
- Protein translocase subunit secd (67 kDa, Protein from Escherichia coli)