CryoEM structure of the post-synaptic RAD51 nucleoprotein filament in the presence of ATP and Ca2+
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8br2
Q-score: 0.573
Appleby R, Bollschweiler D, Chirgadze DY, Joudeh L, Pellegrini L
iScience (2023) 26 pp. 106689-106689 [ Pubmed: 37216117 DOI: doi:10.1016/j.isci.2023.106689 ]
- Dna (5'-d(p*tp*gp*gp*ap*gp*gp*tp*gp*cp*ap*tp*cp*gp*ap*gp*cp*tp*cp*gp*c)-3') (6 kDa, DNA from Homo sapiens)
- Dna (5'-d(p*gp*cp*gp*ap*gp*cp*tp*cp*gp*ap*tp*gp*cp*ap*cp*cp*tp*cp*cp*a)-3') (6 kDa, DNA from Homo sapiens)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Water (18 Da, Ligand)
- Post-synaptic rad51 nucleoprotein filament in the presence of atp and ca2+ (Complex from Homo sapiens)
- Dna repair protein rad51 homolog 1 (37 kDa, Protein from Homo sapiens)
- Calcium ion (40 Da, Ligand)
CryoEM structure of the RAD51 nucleoprotein filament in the presence of ADP and Ca2+
Resolution: 3.6 Å
EM Method: Helical reconstruction
Fitted PDBs: 8bsc
Q-score: 0.462
Appleby R, Bollschweiler D, Chirgadze DY, Joudeh L, Pellegrini L
iScience (2023) 26 pp. 106689-106689 [ Pubmed: 37216117 DOI: doi:10.1016/j.isci.2023.106689 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Filament of human rad51 bound to adp and ca2+ (Complex from Homo sapiens)
- Dna repair protein rad51 homolog 1 (37 kDa, Protein from Homo sapiens)
Resolution: 3.11 Å
EM Method: Single-particle
Fitted PDBs: 6z6f
Q-score: 0.471
Lee JH, Bollschweiler D, Schafer T, Huber R
Sci Adv (2021) 7 [ DOI: doi:10.1126/sciadv.abd4413 Pubmed: 33523989 ]
- Histone deacetylase hda1 (74 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Hda1 complex subunit 2 (71 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone deacetylase hda1 (76 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Hdac-pc (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Zinc ion (65 Da, Ligand)
- Hda1 complex subunit 3,hda1 complex subunit 3 (63 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Resolution: 8.55 Å
EM Method: Single-particle
Fitted PDBs: 6z6h
Q-score: 0.118
Lee JH, Bollschweiler D, Schafer T, Huber R
Sci Adv (2021) 7 [ DOI: doi:10.1126/sciadv.abd4413 Pubmed: 33523989 ]
- Histone deacetylase hda1 (74 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Hda1 complex subunit 2 (71 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone deacetylase hda1 (76 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Zinc ion (65 Da, Ligand)
- Hdac-dc (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Hda1 complex subunit 3,hda1 complex subunit 3 (63 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6z6o
Q-score: 0.313
Lee JH, Bollschweiler D, Schafer T, Huber R
Sci Adv (2021) 7 [ DOI: doi:10.1126/sciadv.abd4413 Pubmed: 33523989 ]
- Histone deacetylase hda1 (74 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Hda1 complex subunit 2 (71 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Hdac-tc (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone deacetylase hda1 (76 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Zinc ion (65 Da, Ligand)
- Hda1 complex subunit 3,hda1 complex subunit 3 (63 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Resolution: 4.43 Å
EM Method: Single-particle
Fitted PDBs: 6z6p
Q-score: 0.189
Lee JH, Bollschweiler D, Schafer T, Huber R
Sci Adv (2021) 7 [ DOI: doi:10.1126/sciadv.abd4413 Pubmed: 33523989 ]
- Histone deacetylase hda1 (74 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna (145-mer) (44 kDa, DNA from unidentified plasmid)
- Histone deacetylase (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone deacetylase hda1 (76 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone h2b (10 kDa, Protein from Xenopus laevis)
- Dna (145-mer) (44 kDa, DNA from unidentified plasmid)
- Histone (Complex from Xenopus laevis)
- Dna (Complex from unidentified plasmid)
- Histone h2b (10 kDa, Protein from Xenopus laevis)
- Hdac-pc-nuc (Complex)
- Hda1 complex subunit 2 (71 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Zinc ion (65 Da, Ligand)
- Histone h3 (11 kDa, Protein from Xenopus laevis)
- Histone h2a type 1 (11 kDa, Protein from Xenopus laevis)
- Histone h2a (11 kDa, Protein from Xenopus laevis)
- Hda1 complex subunit 3,hda1 complex subunit 3 (63 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone h3.2 (11 kDa, Protein from Xenopus laevis)
- Histone h4 (9 kDa, Protein from Xenopus laevis)
- Histone h4 (8 kDa, Protein from Xenopus laevis)
Structure of active GID E3 ubiquitin ligase complex minus Gid2 and delta Gid9 RING domain
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6swy
Q-score: 0.554
Qiao S, Langlois CR, Chrustowicz J, Sherpa D, Karayel O, Hansen FM, Beier V, von Gronau S, Bollschweiler D, Schafer T, Alpi AF, Mann M, Rajan Prabu J, Schulman BA
Mol Cell (2020) 77 pp. 1-14 [ Pubmed: 31708416 DOI: doi:10.1016/j.molcel.2019.10.009 ]
- Vacuolar import and degradation protein 30,vacuolar import and degradation protein 30,vacuolar import and degradation protein 30,vacuolar import and degradation protein 30,vacuolar import and degradation protein 30,vacuolar import and degradation protein 30,vacuolar import and degradation protein 30,vacuolar import and degradation protein 30,vacuolar import and degradation protein 30,vacuolar import and degradation protein 30,vacuolar import and degradation protein 30,vacuolar import and degradation protein 30,vacuolar import and degradation protein 30,vacuolar import and degradation protein 30,vacuolar import and degradation protein 30,vacuolar import and degradation protein 30 (117 kDa, Protein from Saccharomyces cerevisiae S288c)
- Protein fyv10,protein fyv10,protein fyv10,protein fyv10,protein fyv10,protein fyv10,protein fyv10 (54 kDa, Protein from Saccharomyces cerevisiae S288c)
- Gidsr4 minus gid2/delta gid9ring (Complex from Saccharomyces cerevisiae S288c)
- Glucose-induced degradation protein 8 (51 kDa, Protein from Saccharomyces cerevisiae S288c)
- Vacuolar import and degradation protein 28 (105 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Vacuolar import and degradation protein 24 (41 kDa, Protein from Saccharomyces cerevisiae S288c)