cytochrome bd-II type oxidase with bound aurachin D
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7ose
Q-score: 0.506
Grauel A, Kagi J, Rasmussen T, Makarchuk I, Oppermann S, Moumbock AFA, Wohlwend D, Muller R, Melin F, Gunther S, Hellwig P, Bottcher B, Friedrich T
Nat Commun (2021) 12 pp. 6498-6498 [ DOI: doi:10.1038/s41467-021-26835-2 Pubmed: 34764272 ]
- Cytochrome bd-ii ubiquinol oxidase subunit 2 (42 kDa, Protein from Escherichia coli BW25113)
- Water (18 Da, Ligand)
- Aurachin d (363 Da, Ligand)
- Heme b/c (618 Da, Ligand)
- Cis-heme d hydroxychlorin gamma-spirolactone (632 Da, Ligand)
- Putative cytochrome bd-ii ubiquinol oxidase subunit appx (3 kDa, Protein from Escherichia coli BW25113)
- Cytochrome bd-ii ubiquinol oxidase subunit 1 (57 kDa, Protein from Escherichia coli BW25113)
- Ubiquinone-8 (727 Da, Ligand)
- Cytochrome bd-ii ubiquinol oxidase (208 kDa, Complex from Escherichia coli BW25113)
THE STRUCTURE OF BD OXIDASE FROM ESCHERICHIA COLI
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6rx4
Q-score: 0.478
Thesseling A, Rasmussen T, Burschel S, Wohlwend D, Kagi J, Muller R, Bottcher B, Friedrich T
Nat Commun (2019) 10 pp. 5138-5138 [ DOI: doi:10.1038/s41467-019-13122-4 Pubmed: 31723136 ]
- Water (18 Da, Ligand)
- Cytochrome bd-i ubiquinol oxidase subunit y (2 kDa, Protein from Escherichia coli K-12)
- Cytochrome bd-i ubiquinol oxidase subunit x (4 kDa, Protein from Escherichia coli (strain K12))
- Heme b/c (618 Da, Ligand)
- Cis-heme d hydroxychlorin gamma-spirolactone (632 Da, Ligand)
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (744 Da, Ligand)
- Cytochrome bd-i ubiquinol oxidase subunit 2 (42 kDa, Protein from Escherichia coli (strain K12))
- Cytochrome bd-i ubiquinol oxidase subunit 1 (58 kDa, Protein from Escherichia coli (strain K12))
- Bd-oxidase from escherichia coli (Complex from Escherichia coli K-12)
- Ubiquinone-8 (727 Da, Ligand)
Conformational flexibility of RNA polymerase III during transcriptional elongation
Fernandez-Tornero C, Bottcher B, Rashid UJ, Steuerwald U, Florchinger B, Devos DP, Lindner D, Muller CW
EMBO J (2010) 29 pp. 3762-3772 [ Pubmed: 20967027 DOI: doi:10.1038/emboj.2010.266 ]
- Rna polymerase iii (700 kDa, Sample)
- Rna polymerase iii (700 kDa, Protein from Saccharomyces cerevisiae)
Conformational flexibility of RNA polymerase III during transcriptional elongation
Fernandez-Tornero C, Bottcher B, Rashid UJ, Steuerwald U, Florchinger B, Devos DP, Lindner D, Muller CW
EMBO J (2010) 29 pp. 3762-3772 [ Pubmed: 20967027 DOI: doi:10.1038/emboj.2010.266 ]
- Rna polymerase iii (700 kDa, Protein from Saccharomyces cerevisiae)
- Transcription bubble (30 kDa, Macromolecule from synthetic construct)
- Rna polymerase iii elongation complex (700 kDa, Sample)
Conformational flexibility of RNA polymerase III during transcriptional elongation
Fernandez-Tornero C, Bottcher B, Rashid UJ, Steuerwald U, Florchinger B, Devos DP, Lindner D, Muller CW
EMBO J (2010) 29 pp. 3762-3772 [ Pubmed: 20967027 DOI: doi:10.1038/emboj.2010.266 ]
- Rna polymerase iii (700 kDa, Sample)
- Rna polymerase iii (700 kDa, Protein from Saccharomyces cerevisiae)
Fernandez-Tornero C, Bottcher B, Riva M, Carles C, Steuerwald U, Ruigrok RW, Sentenac A, Muller CW, Schoehn G
Mol Cell (2007) 25 pp. 813-823 [ DOI: doi:10.1016/j.molcel.2007.02.016 Pubmed: 17386259 ]
- C82 (82 kDa, Protein from Saccharomyces cerevisiae)
- C160 (160 kDa, Protein from Saccharomyces cerevisiae)
- C34 (34 kDa, Protein from Saccharomyces cerevisiae)
- Ac40 (40 kDa, Protein from Saccharomyces cerevisiae)
- Ac19 (19 kDa, Protein from Saccharomyces cerevisiae)
- Abc23 (23 kDa, Protein from Saccharomyces cerevisiae)
- Abc10beta (10 kDa, Protein from Saccharomyces cerevisiae)
- C11 (11 kDa, Protein from Saccharomyces cerevisiae)
- C128 (128 kDa, Protein from Saccharomyces cerevisiae)
- C53 (53 kDa, Protein from Saccharomyces cerevisiae)
- C17 (17 kDa, Protein from Saccharomyces cerevisiae)
- Abc27 (27 kDa, Protein from Saccharomyces cerevisiae)
- Yeast rna polymerase iii (700 kDa, Sample)
- C25 (25 kDa, Protein from Saccharomyces cerevisiae)
- C37 (37 kDa, Protein from Saccharomyces cerevisiae)
- Abc14.5 (14 kDa, Protein from Saccharomyces cerevisiae)
- C31 (31 kDa, Protein from Saccharomyces cerevisiae)
- Abc10alpha (10 kDa, Protein from Saccharomyces cerevisiae)