Hepatitis B core protein with bound P1dC
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8px3
Q-score: 0.526
Khayenko V, Makbul C, Schulte C, Hemmelmann N, Bottcher B, Maric HM
To Be Published
- P1dc (1 kDa, Protein from synthetic construct)
- Hepatitis b virus (5 MDa, Virus from Hepatitis B virus)
- External core antigen (21 kDa, Protein from Hepatitis B virus)
cytochrome bd-II type oxidase with bound aurachin D
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7ose
Q-score: 0.506
Grauel A, Kagi J, Rasmussen T, Makarchuk I, Oppermann S, Moumbock AFA, Wohlwend D, Muller R, Melin F, Gunther S, Hellwig P, Bottcher B, Friedrich T
Nat Commun (2021) 12 pp. 6498-6498 [ DOI: doi:10.1038/s41467-021-26835-2 Pubmed: 34764272 ]
- Cytochrome bd-ii ubiquinol oxidase subunit 2 (42 kDa, Protein from Escherichia coli BW25113)
- Water (18 Da, Ligand)
- Aurachin d (363 Da, Ligand)
- Heme b/c (618 Da, Ligand)
- Cis-heme d hydroxychlorin gamma-spirolactone (632 Da, Ligand)
- Putative cytochrome bd-ii ubiquinol oxidase subunit appx (3 kDa, Protein from Escherichia coli BW25113)
- Cytochrome bd-ii ubiquinol oxidase subunit 1 (57 kDa, Protein from Escherichia coli BW25113)
- Ubiquinone-8 (727 Da, Ligand)
- Cytochrome bd-ii ubiquinol oxidase (208 kDa, Complex from Escherichia coli BW25113)
Mechanosensitive channel MscS solubilized with DDM in closed conformation
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7onl
Q-score: 0.427
Flegler VJ, Rasmussen A, Borbil K, Boten L, Chen HA, Deinlein H, Halang J, Hellmanzik K, Loffler J, Schmidt V, Makbul C, Kraft C, Hedrich R, Rasmussen T, Bottcher B
PNAS (2021) 118 [ Pubmed: 34376558 DOI: doi:10.1073/pnas.2107095118 ]
Mechanosensitive channel MscS solubilized with DDM in open conformation
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7oo0
Q-score: 0.559
Flegler VJ, Rasmussen A, Borbil K, Boten L, Chen HA, Deinlein H, Halang J, Hellmanzik K, Loffler J, Schmidt V, Makbul C, Kraft C, Hedrich R, Rasmussen T, Bottcher B
PNAS (2021) 118 [ Pubmed: 34376558 DOI: doi:10.1073/pnas.2107095118 ]
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Mechanosensitive channel mscs (31 kDa, Protein from Escherichia coli)
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (744 Da, Ligand)
- Homoheptameric complex of mscs coordinated with lipids and detergent ddm (224 kDa, Complex from Escherichia coli)
Mechanosensitive channel MscS solubilized with DDM in closed conformation with added lipid
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7oo6
Q-score: 0.513
Flegler VJ, Rasmussen A, Borbil K, Boten L, Chen HA, Deinlein H, Halang J, Hellmanzik K, Loffler J, Schmidt V, Makbul C, Kraft C, Hedrich R, Rasmussen T, Bottcher B
PNAS (2021) 118 [ Pubmed: 34376558 DOI: doi:10.1073/pnas.2107095118 ]
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- 1,2-dioleoyl-sn-glycero-3-phosphocholine (787 Da, Ligand)
- Homoheptameric complex of mscs coordinated with lipids and detergent ddm (224 kDa, Complex from Escherichia coli)
- Mechanosensitive channel of small conductance (mscs) (31 kDa, Protein from Escherichia coli)
Mechanosensitive channel MscS solubilized with LMNG in closed conformation with added lipid
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7oo8
Q-score: 0.458
Flegler VJ, Rasmussen A, Borbil K, Boten L, Chen HA, Deinlein H, Halang J, Hellmanzik K, Loffler J, Schmidt V, Makbul C, Kraft C, Hedrich R, Rasmussen T, Bottcher B
PNAS (2021) 118 [ Pubmed: 34376558 DOI: doi:10.1073/pnas.2107095118 ]
Hepatitis B core protein -low secretion phenotype L60V
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7oco
Q-score: 0.571
Makbul C, Khayenko V, Maric HM, Bottcher B
Microorganisms (2021) 9 [ DOI: doi:10.3390/microorganisms9050956 Pubmed: 33946808 ]
Hepatitis B core protein -low secretion phenotype P5T
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7ocw
Q-score: 0.569
Makbul C, Khayenko V, Maric HM, Bottcher B
Microorganisms (2021) 9 [ DOI: doi:10.3390/microorganisms9050956 Pubmed: 33946808 ]
- Capsid protein (21 kDa, Protein from Hepatitis B virus)
- Hepatitis b virus (4 MDa, Virus from Hepatitis B virus)
Hepatitis B core protein + GSLLGRMKGA
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7od6
Q-score: 0.57
Makbul C, Khayenko V, Maric HM, Bottcher B
Microorganisms (2021) 9 [ DOI: doi:10.3390/microorganisms9050956 Pubmed: 33946808 ]
- Capsid protein (21 kDa, Protein from Hepatitis B virus genotype D subtype ayw (isolate France/Tiollais/1979))
- Hepatitis b virus (4 MDa, Virus from Hepatitis B virus)
- Inhibitory peptide p2 (gsllgrmkga) (1 kDa, Protein from synthetic construct)
Hepatitis B core Protein mutant L60V + GSLLGRMKGA
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7od8
Q-score: 0.573
Makbul C, Khayenko V, Maric HM, Bottcher B
Microorganisms (2021) 9 [ DOI: doi:10.3390/microorganisms9050956 Pubmed: 33946808 ]
- Peptide gsllgrmkga (1 kDa, Protein from synthetic construct)
- Hepatitis b virus (4 MDa, Virus from Hepatitis B virus)
- Capsid protein (21 kDa, Protein from Hepatitis B virus genotype D subtype ayw (isolate France/Tiollais/1979))