Happy Holidays & Happy New Year from the EMDB team! During this period (23rd December - 6th January) the EMDB team and our OneDep curators will be working at reduced capacity. We will continue to run the weekly release of entries as normal, but entry annotation & support may be slower than usual. Thanks for your understanding.
Cryo-EM structure of small subunit of Giardia lamblia ribosome at 2.9 A resolution
Resolution: 2.85 Å
EM Method: Single-particle
Fitted PDBs: 7pwf
Q-score: 0.622
Hiregange DG, Rivalta A, Bose T, Breiner-Goldstein E, Samiya S, Cimicata G, Kulakova L, Zimmerman E, Bashan A, Herzberg O, Yonath A
Nucleic Acids Res (2022) 50 pp. 1770-1782 [ DOI: doi:10.1093/nar/gkac046 Pubmed: 35100413 ]
- Ribosomal protein s17 (15 kDa, Protein from Giardia lamblia ATCC 50803)
- 40s ribosomal protein sa (28 kDa, Protein from Giardia lamblia ATCC 50803)
- Ribosomal protein s28 (7 kDa, Protein from Giardia lamblia ATCC 50803)
- Ribosomal protein s29a (15 kDa, Protein from Giardia lamblia ATCC 50803)
- Ribosomal protein s18 (17 kDa, Protein from Giardia lamblia ATCC 50803)
- Ribosomal protein s20 (14 kDa, Protein from Giardia lamblia ATCC 50803)
- 40s ribosomal protein s25 (10 kDa, Protein from Giardia lamblia ATCC 50803)
- Ribosomal protein s3 (24 kDa, Protein from Giardia lamblia ATCC 50803)
- Ribosomal protein s14 (15 kDa, Protein from Giardia lamblia ATCC 50803)
- Potassium ion (39 Da, Ligand)
- Rrna 18s (471 kDa, RNA from Giardia lamblia ATCC 50803)
- Ribosomal protein s10b (15 kDa, Protein from Giardia lamblia ATCC 50803)
- Ribosomal protein s13 (17 kDa, Protein from Giardia lamblia ATCC 50803)
- Ribosomal protein s27 (14 kDa, Protein from Giardia lamblia ATCC 50803)
- 40s ribosomal protein s6 (28 kDa, Protein from Giardia lamblia ATCC 50803)
- Ssu ribosomal protein s17p (23 kDa, Protein from Giardia lamblia ATCC 50803)
- 40s ribosomal protein s30 (7 kDa, Protein from Giardia lamblia ATCC 50803)
- 40s ribosomal protein s8 (19 kDa, Protein from Giardia lamblia ATCC 50803)
- Ribosomal protein s5 (21 kDa, Protein from Giardia lamblia ATCC 50803)
- Ribosomal protein s23 (15 kDa, Protein from Giardia lamblia ATCC 50803)
- Magnesium ion (24 Da, Ligand)
- Giardia lamblia small subunit (Complex from Giardia lamblia ATCC 50803)
- Ribosomal protein el41 (5 kDa, Protein from Giardia lamblia ATCC 50803)
- Ribosomal protein es7 (21 kDa, Protein from Giardia lamblia ATCC 50803)
- Ribosomal protein s24 (14 kDa, Protein from Giardia lamblia ATCC 50803)
- 40s ribosomal protein s3a (28 kDa, Protein from Giardia lamblia ATCC 50803)
- 40s ribosomal protein s26 (12 kDa, Protein from Giardia lamblia ATCC 50803)
- 40s ribosomal protein s21 (9 kDa, Protein from Giardia lamblia ATCC 50803)
- 40s ribosomal protein s4 (30 kDa, Protein from Giardia lamblia ATCC 50803)
- Ribosomal protein s9 (21 kDa, Protein from Giardia lamblia ATCC 50803)
- Ribosomal protein s15 (16 kDa, Protein from Giardia lamblia ATCC 50803)
- Ribosomal protein s19e (15 kDa, Protein from Giardia lamblia ATCC 50803)
- Ribosomal protein s15a (14 kDa, Protein from Giardia lamblia ATCC 50803)
- Ribosomal protein s2 (26 kDa, Protein from Giardia lamblia ATCC 50803)
- Ribosomal protein s16 (17 kDa, Protein from Giardia lamblia ATCC 50803)
Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution
Resolution: 2.75 Å
EM Method: Single-particle
Fitted PDBs: 7pwg
Q-score: 0.666
Hiregange DG, Rivalta A, Bose T, Breiner-Goldstein E, Samiya S, Cimicata G, Kulakova L, Zimmerman E, Bashan A, Herzberg O, Yonath A
Nucleic Acids Res (2022) 50 pp. 1770-1782 [ DOI: doi:10.1093/nar/gkac046 Pubmed: 35100413 ]
- Giardia lamblia ribosome (Complex from Giardia intestinalis (strain ATCC 50803 / WB clone C6))
- Ubiquitin/ribosomal protein l40e (14 kDa, Protein from Giardia lamblia ATCC 50803)
- Ribosomal protein l4 (35 kDa, Protein from Giardia lamblia ATCC 50803)
- Ribosomal protein l37 (10 kDa, Protein from Giardia lamblia ATCC 50803)
- 60s ribosomal protein l29 (7 kDa, Protein from Giardia lamblia ATCC 50803)
- Ribosomal protein l17 (18 kDa, Protein from Giardia lamblia ATCC 50803)
- Ribosomal protein l31b (12 kDa, Protein from Giardia lamblia ATCC 50803)
- Ribosomal protein l11 (19 kDa, Protein from Giardia lamblia ATCC 50803)
- Ribosomal protein l30 (11 kDa, Protein from Giardia lamblia ATCC 50803)
- Ribosomal protein l32 (15 kDa, Protein from Giardia lamblia ATCC 50803)
- Ribosomal protein l36-1 (10 kDa, Protein from Giardia lamblia ATCC 50803)
- Rrna 28s (878 kDa, RNA from Giardia lamblia ATCC 50803)
- Ribosomal protein l23 (15 kDa, Protein from Giardia lamblia ATCC 50803)
- Ribosomal protein l21 (18 kDa, Protein from Giardia lamblia ATCC 50803)
- Ribosomal protein l26 (15 kDa, Protein from Giardia lamblia ATCC 50803)
- Ribosomal protein l13a (22 kDa, Protein from Giardia lamblia ATCC 50803)
- 60s ribosomal protein l13 (26 kDa, Protein from Giardia lamblia ATCC 50803)
- Ribosomal protein l44 (12 kDa, Protein from Giardia lamblia ATCC 50803)
- Ribosomal protein l3 (42 kDa, Protein from Giardia lamblia ATCC 50803)
- 60s ribosomal protein l7a (25 kDa, Protein from Giardia lamblia ATCC 50803)
- Ribosomal protein l27a (17 kDa, Protein from Giardia lamblia ATCC 50803)
- Ribosomal protein l18 (20 kDa, Protein from Giardia lamblia ATCC 50803)
- Potassium ion (39 Da, Ligand)
- Ribosomal protein l5 (33 kDa, Protein from Giardia lamblia ATCC 50803)
- Ribosomal protein l10 (24 kDa, Protein from Giardia lamblia ATCC 50803)
- Ribosomal protein l2 (27 kDa, Protein from Giardia lamblia ATCC 50803)
- Ribosomal protein l29 (14 kDa, Protein from Giardia lamblia ATCC 50803)
- Ribosomal protein l14 (14 kDa, Protein from Giardia lamblia ATCC 50803)
- Ribosomal l38e (8 kDa, Protein from Giardia lamblia ATCC 50803)
- Rrna 5.8s (44 kDa, RNA from Giardia lamblia ATCC 50803)
- Ribosomal protein l23a (16 kDa, Protein from Giardia lamblia ATCC 50803)
- Ribosomal protein l39 (6 kDa, Protein from Giardia lamblia ATCC 50803)
- Ribosomal protein l19 (23 kDa, Protein from Giardia lamblia ATCC 50803)
- Ribosomal protein l7 (27 kDa, Protein from Giardia lamblia ATCC 50803)
- Magnesium ion (24 Da, Ligand)
- Ribosomal protein el22 (19 kDa, Protein from Giardia lamblia ATCC 50803)
- Ribosomal protein l34 (13 kDa, Protein from Giardia lamblia ATCC 50803)
- 60s ribosomal protein l27 (15 kDa, Protein from Giardia lamblia ATCC 50803)
- Ribosomal protein l15 (24 kDa, Protein from Giardia lamblia ATCC 50803)
- Water (18 Da, Ligand)
- Ribosomal protein l37a (10 kDa, Protein from Giardia lamblia ATCC 50803)
- E-site trna (24 kDa, RNA from Giardia lamblia ATCC 50803)
- Ribosomal protein l6 (20 kDa, Protein from Giardia lamblia ATCC 50803)
- Triethylene glycol (150 Da, Ligand)
- Ribosomal protein l24a (12 kDa, Protein from Giardia lamblia ATCC 50803)
- P-site trna (894 Da, RNA from Giardia lamblia ATCC 50803)
- 60s ribosomal protein l18a (20 kDa, Protein from Giardia lamblia ATCC 50803)
- Rrna 5s (38 kDa, RNA from Giardia lamblia ATCC 50803)
- Ribosomal protein l35a (13 kDa, Protein from Giardia lamblia ATCC 50803)