Resolution: 8.2 Å
EM Method: Single-particle
Fitted PDBs: 6zvr
Q-score: 0.251
Liu J, Tassinari M, Souza DP, Naskar S, Noel JK, Bohuszewicz O, Buck M, Williams TA, Baum B, Low HH
Cell (2021) 184 pp. 3660-3673.e18 [ Pubmed: 34166615 DOI: doi:10.1016/j.cell.2021.05.041 ]
- Vipp1 c11 ring (Complex from Nostoc punctiforme)
- Vipp1 (28 kDa, Protein from Nostoc punctiforme)
Resolution: 7.2 Å
EM Method: Single-particle
Fitted PDBs: 6zvs
Q-score: 0.261
Liu J, Tassinari M, Souza DP, Naskar S, Noel JK, Bohuszewicz O, Buck M, Williams TA, Baum B, Low HH
Cell (2021) 184 pp. 3660-3673.e18 [ Pubmed: 34166615 DOI: doi:10.1016/j.cell.2021.05.041 ]
- Vipp1 c12 ring (Complex from Nostoc punctiforme)
- Vipp1 (28 kDa, Protein from Nostoc punctiforme)
Resolution: 7.0 Å
EM Method: Single-particle
Fitted PDBs: 6zvt
Q-score: 0.258
Liu J, Tassinari M, Souza DP, Naskar S, Noel JK, Bohuszewicz O, Buck M, Williams TA, Baum B, Low HH
Cell (2021) 184 pp. 3660-3673.e18 [ Pubmed: 34166615 DOI: doi:10.1016/j.cell.2021.05.041 ]
- Vipp1 (28 kDa, Protein from Nostoc punctiforme)
- Vipp1 c13 ring (Complex from Nostoc punctiforme)
Resolution: 6.5 Å
EM Method: Single-particle
Fitted PDBs: 6zw4
Q-score: 0.26
Liu J, Tassinari M, Souza DP, Naskar S, Noel JK, Bohuszewicz O, Buck M, Williams TA, Baum B, Low HH
Cell (2021) 184 pp. 3660-3673.e18 [ Pubmed: 34166615 DOI: doi:10.1016/j.cell.2021.05.041 ]
- Vipp1 (28 kDa, Protein from Nostoc punctiforme)
- Vipp1 c14 ring (Complex from Nostoc punctiforme)
Resolution: 7.0 Å
EM Method: Single-particle
Fitted PDBs: 6zw5
Q-score: 0.258
Liu J, Tassinari M, Souza DP, Naskar S, Noel JK, Bohuszewicz O, Buck M, Williams TA, Baum B, Low HH
Cell (2021) 184 pp. 3660-3673.e18 [ Pubmed: 34166615 DOI: doi:10.1016/j.cell.2021.05.041 ]
- Vipp1 c15 ring (Complex from Nostoc punctiforme)
- Vipp1 (28 kDa, Protein from Nostoc punctiforme)
Resolution: 7.4 Å
EM Method: Single-particle
Fitted PDBs: 6zw6
Q-score: 0.25
Liu J, Tassinari M, Souza DP, Naskar S, Noel JK, Bohuszewicz O, Buck M, Williams TA, Baum B, Low HH
Cell (2021) 184 pp. 3660-3673.e18 [ Pubmed: 34166615 DOI: doi:10.1016/j.cell.2021.05.041 ]
- Vipp1 (28 kDa, Protein from Nostoc punctiforme)
- Vipp1 c16 ring (Complex from Nostoc punctiforme)
Resolution: 9.4 Å
EM Method: Single-particle
Fitted PDBs: 6zw7
Q-score: 0.211
Liu J, Tassinari M, Souza DP, Naskar S, Noel JK, Bohuszewicz O, Buck M, Williams TA, Baum B, Low HH
Cell (2021) 184 pp. 3660-3673.e18 [ Pubmed: 34166615 DOI: doi:10.1016/j.cell.2021.05.041 ]
- Vipp1 (28 kDa, Protein from Nostoc punctiforme)
- Vipp1 c17 ring (Complex from Nostoc punctiforme)
Cryo-EM structure of bacterial RNAP with a DNA mimic protein Ocr from T7 phage
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6r9b
Q-score: 0.216
Ye F, Kotta-Loizou I, Jovanovic M, Liu X, Dryden DT, Buck M, Zhang X
eLife (2020) 9 [ DOI: doi:10.7554/eLife.52125 Pubmed: 32039758 ]
- Ocr (overcome classical restriction) (Complex from Enterobacteria phage T7)
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli (strain K12))
- Dna-directed rna polymerase subunit beta' (155 kDa, Protein from Escherichia coli (strain K12))
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli (strain K12))
- Structural basis of transcription inhibition by the dna mimic ocr protein of bacteriophage t7 (410 kDa, Complex)
- Overcome classical restriction gp0.3 (13 kDa, Protein from Enterobacteria phage T7)
- Dna-directed rna polymerase (Complex from Escherichia coli K-12)
- Dna-directed rna polymerase subunit omega (9 kDa, Protein from Escherichia coli K-12)
Structural basis of transcription inhibition by the DNA mimic Ocr protein of bacteriophage T7
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6r9g
Q-score: 0.225
Ye F, Kotta-Loizou I, Jovanovic M, Liu X, Dryden DT, Buck M, Zhang X
eLife (2020) 9 [ DOI: doi:10.7554/eLife.52125 Pubmed: 32039758 ]
- Ocr(overcome classical restriction) (Complex from Enterobacteria phage T7)
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli (strain K12))
- Dna-directed rna polymerase subunit beta' (155 kDa, Protein from Escherichia coli (strain K12))
- Dna-directed rna polymerase subunit omega (9 kDa, Protein from Escherichia coli (strain K12))
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli (strain K12))
- Overcome classical restriction gp0.3 (13 kDa, Protein from Enterobacteria phage T7)
- Dna-directed rna polymerase (Complex from Escherichia coli K-12)
- Complex structure of wide-clamp conformation of rna polymerase with t7 bacteriophage protein ocr (410 kDa, Complex)
Cryo-EM structure of bacterial RNA polymerase-sigma54 holoenzyme transcription open complex
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6gh5
Q-score: 0.412
Glyde R, Ye F, Jovanovic M, Kotta-Loizou I, Buck M, Zhang X
Mol Cell (2018) 70 pp. 1111-1120.e3 [ Pubmed: 29932903 DOI: doi:10.1016/j.molcel.2018.05.021 ]
- Cryo-em structure of bacterial rna polymerase-sigma54 holoenzyme transcription open complex (490 kDa, Complex)
- Rna polymerase sigma-54 factor,rna polymerase sigma-54 factor,rna polymerase sigma-54 factor,rna polymerase sigma-54 factor,rna polymerase sigma-54 factor (54 kDa, Protein from Klebsiella pneumoniae)
- Nifh promoter template dna (19 kDa, DNA from Klebsiella pneumoniae)
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli (strain K12))
- Dna-directed rna polymerase subunit beta' (155 kDa, Protein from Escherichia coli (strain K12))
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli (strain K12))
- Dna (Complex from Klebsiella pneumoniae)
- Dna-directed rna polymerase subunit omega (10 kDa, Protein from Escherichia coli (strain K12))
- Nifh promoter non-template dna (19 kDa, DNA from Klebsiella pneumoniae)
- Dna-directed rna polymerase (Complex from Escherichia coli K-12)
- Rna polymerase sigma-54 factor (Complex from Klebsiella pneumoniae)