Cryo-EM structure of the plant 80S ribosome
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 8b2l
Q-score: 0.639
Smirnova J, Loerke J, Kleinau G, Schmidt A, Burger J, Meyer EH, Mielke T, Scheerer P, Bock R, Spahn CMT, Zoschke R
Nat Plants (2023) 9 pp. 987-1000 [ Pubmed: 37156858 DOI: doi:10.1038/s41477-023-01407-y ]
- Ul15 (60s ribosomal protein l27a) (16 kDa, Protein from Nicotiana tabacum)
- 60s ribosomal protein l13 (23 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s26 (14 kDa, Protein from Nicotiana tabacum)
- 60s ribosomal protein l5-like (34 kDa, Protein from Nicotiana tabacum)
- Ul3 (60s ribosomal protein l3) (44 kDa, Protein from Nicotiana tabacum)
- 60s ribosomal protein l34 (13 kDa, Protein from Nicotiana tabacum)
- 30s ribosomal protein s15, chloroplastic (17 kDa, Protein from Nicotiana tabacum)
- Ubiquitin-40s ribosomal protein s27a-like (17 kDa, Protein from Nicotiana tabacum)
- 40s subunit of the cytosolic 80s ribosome from tobacco (Complex from Nicotiana tabacum)
- 40s ribosomal protein s4 (29 kDa, Protein from Nicotiana tabacum)
- 60s ribosomal protein l22-2-like (14 kDa, Protein from Nicotiana tabacum)
- 60s ribosomal protein l29 (7 kDa, Protein from Nicotiana tabacum)
- 18s rrna (583 kDa, RNA from Nicotiana tabacum)
- 40s ribosomal protein s16 (16 kDa, Protein from Nicotiana tabacum)
- Trna (24 kDa, RNA from Nicotiana tabacum)
- 60s ribosomal protein l14-1 (15 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s9-2-like (23 kDa, Protein from Nicotiana tabacum)
- 60s ribosomal protein l21-1-like (18 kDa, Protein from Nicotiana tabacum)
- 60s ribosomal protein l44 (12 kDa, Protein from Nicotiana tabacum)
- Ribosomal protein l37 (10 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s12 (15 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s14-2 (16 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s24 (15 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s7 (22 kDa, Protein from Nicotiana tabacum)
- 60s ribosomal protein l39-3 (6 kDa, Protein from Nicotiana tabacum)
- Potassium ion (39 Da, Ligand)
- 40s ribosomal protein s15-like (17 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s5-like (23 kDa, Protein from Nicotiana tabacum)
- Ul2 (60s ribosomal protein l8) (28 kDa, Protein from Nicotiana tabacum)
- Water (18 Da, Ligand)
- 60s ribosomal protein l32-1 (15 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s29 (6 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s11-like (17 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s19-3 (16 kDa, Protein from Nicotiana tabacum)
- 60s ribosomal protein l23a (17 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s10-1-like (23 kDa, Protein from Nicotiana tabacum)
- 25s rrna (1 MDa, RNA from Nicotiana tabacum)
- Ul6 (60s ribosomal protein l9) (22 kDa, Protein from Nicotiana tabacum)
- 50s ribosomal protein l22, chloroplastic (20 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s27 (9 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s8 (25 kDa, Protein from Nicotiana tabacum)
- El6 (60s ribosomal protein l6) (25 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s30 (6 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s20-2 (13 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s3a (29 kDa, Protein from Nicotiana tabacum)
- Mrna (3 kDa, RNA from Nicotiana tabacum)
- Ribosomal protein l19 (25 kDa, Protein from Nicotiana tabacum)
- Ribosomal protein l15 (24 kDa, Protein from Nicotiana tabacum)
- Nascent chain (2 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s3-2-like (27 kDa, Protein from Nicotiana tabacum)
- 60s ribosomal protein l18a (21 kDa, Protein from Nicotiana tabacum)
- Ul5 (60s ribosomal protein l11) (20 kDa, Protein from Nicotiana tabacum)
- 60s ribosomal protein l24-like (18 kDa, Protein from Nicotiana tabacum)
- 60s ribosomal protein l18-2-like (20 kDa, Protein from Nicotiana tabacum)
- 5s rrna (38 kDa, RNA from Nicotiana tabacum)
- 60s ribosomal protein l30-like (12 kDa, Protein from Nicotiana tabacum)
- Spermine (202 Da, Ligand)
- El36 (60s ribosomal protein l36) (12 kDa, Protein from Nicotiana tabacum)
- Ul24 (60s ribosomal protein l26) (16 kDa, Protein from Nicotiana tabacum)
- Ul16 (60s ribosomal protein l10) (25 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s2-3-like (30 kDa, Protein from Nicotiana tabacum)
- 60s ribosomal protein l7-4-like (28 kDa, Protein from Nicotiana tabacum)
- Zinc ion (65 Da, Ligand)
- El31 (60s ribosomal protein l31) (13 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s23 (15 kDa, Protein from Nicotiana tabacum)
- 60s ribosomal protein l38 (8 kDa, Protein from Nicotiana tabacum)
- El27 (60s ribosomal protein l27) (15 kDa, Protein from Nicotiana tabacum)
- 60s ribosomal protein l35-like (14 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s17-like (16 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s18 (17 kDa, Protein from Nicotiana tabacum)
- El33 (60s ribosomal protein l35a) (12 kDa, Protein from Nicotiana tabacum)
- Ul13 (60s ribosomal protein l13a) (23 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s6 (28 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s21 (9 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein sa (35 kDa, Protein from Nicotiana tabacum)
- Spermidine (145 Da, Ligand)
- 5.8s rrna (52 kDa, RNA from Nicotiana tabacum)
- 40s ribosomal protein s28 (7 kDa, Protein from Nicotiana tabacum)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Nicotiana tabacum)
- 60s ribosomal protein l23 (15 kDa, Protein from Nicotiana tabacum)
- Guanine nucleotide-binding protein subunit beta-like protein (36 kDa, Protein from Nicotiana tabacum)
- 60s ribosomal protein l37a (10 kDa, Protein from Nicotiana tabacum)
- 60s ribosomal protein l7a (29 kDa, Protein from Nicotiana tabacum)
- Ul4 (60s ribosomal protein l4) (44 kDa, Protein from Nicotiana tabacum)
- 60s ribosomal protein l41 (3 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s15a-1 (14 kDa, Protein from Nicotiana tabacum)
- El28 (60s ribosomal protein l28) (15 kDa, Protein from Nicotiana tabacum)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein s25 (11 kDa, Protein from Nicotiana tabacum)
Cryo-EM structure of the plant 40S subunit
Resolution: 2.38 Å
EM Method: Single-particle
Fitted PDBs: 8auv
Q-score: 0.622
Smirnova J, Loerke J, Kleinau G, Schmidt A, Burger J, Meyer EH, Mielke T, Scheerer P, Bock R, Spahn CMT, Zoschke R
Nat Plants (2023) 9 pp. 987-1000 [ Pubmed: 37156858 DOI: doi:10.1038/s41477-023-01407-y ]
- Es28 (40s ribosomal protein s28) (7 kDa, Protein from Nicotiana tabacum)
- Es30 (40s ribosomal protein s30) (6 kDa, Protein from Nicotiana tabacum)
- Es4 (40s ribosomal protein s4) (29 kDa, Protein from Nicotiana tabacum)
- Es8 (40s ribosomal protein s8) (25 kDa, Protein from Nicotiana tabacum)
- Us7 (40s ribosomal protein s5) (23 kDa, Protein from Nicotiana tabacum)
- Rack1 (guanine nucleotide-binding protein subunit beta-like protein) (36 kDa, Protein from Nicotiana tabacum)
- Us12 (40s ribosomal protein s23) (15 kDa, Protein from Nicotiana tabacum)
- Us3 (40s ribosomal protein s3) (27 kDa, Protein from Nicotiana tabacum)
- Us13 (40s ribosomal protein s18) (17 kDa, Protein from Nicotiana tabacum)
- Mrna (3 kDa, RNA from Nicotiana tabacum)
- Es21 (40s ribosomal protein s21) (9 kDa, Protein from Nicotiana tabacum)
- Us17 (40s ribosomal protein s11) (17 kDa, Protein from Nicotiana tabacum)
- Es12 (40s ribosomal protein s12) (15 kDa, Protein from Nicotiana tabacum)
- Es10 (40s ribosomal protein s10) (23 kDa, Protein from Nicotiana tabacum)
- Us5 (40s ribosomal protein s2) (30 kDa, Protein from Nicotiana tabacum)
- Spermidine (145 Da, Ligand)
- Potassium ion (39 Da, Ligand)
- Us10 (40s ribosomal protein s20) (13 kDa, Protein from Nicotiana tabacum)
- Us11 (40s ribosomal protein s14) (16 kDa, Protein from Nicotiana tabacum)
- Us14 (40s ribosomal protein s29) (6 kDa, Protein from Nicotiana tabacum)
- Water (18 Da, Ligand)
- Es1 (40s ribosomal protein s3a) (29 kDa, Protein from Nicotiana tabacum)
- Us9 (40s ribosomal protein s16) (16 kDa, Protein from Nicotiana tabacum)
- Us4 (40s ribosomal protein s9) (23 kDa, Protein from Nicotiana tabacum)
- Us19 (40s ribosomal protein s15) (17 kDa, Protein from Nicotiana tabacum)
- Es24 (40s ribosomal protein s24) (15 kDa, Protein from Nicotiana tabacum)
- Es27 (40s ribosomal protein s27) (9 kDa, Protein from Nicotiana tabacum)
- Us15 (40s ribosomal protein s13) (17 kDa, Protein from Nicotiana tabacum)
- Spermine (202 Da, Ligand)
- Es26 (40s ribosomal protein s26) (14 kDa, Protein from Nicotiana tabacum)
- Es17 (40s ribosomal protein s17) (16 kDa, Protein from Nicotiana tabacum)
- 40s subunit of the cytosolic 80s ribosome from tobacco (Complex from Nicotiana tabacum)
- Us8 (40s ribosomal protein s15a) (14 kDa, Protein from Nicotiana tabacum)
- Zinc ion (65 Da, Ligand)
- Es31 (ubiquitin-40s ribosomal protein s27a) (17 kDa, Protein from Nicotiana tabacum)
- 18s rrna (583 kDa, RNA from Nicotiana tabacum)
- Es6 (40s ribosomal protein s6) (28 kDa, Protein from Nicotiana tabacum)
- Es7 (40s ribosomal protein s7) (22 kDa, Protein from Nicotiana tabacum)
- Magnesium ion (24 Da, Ligand)
- Es25 (40s ribosomal protein s25) (11 kDa, Protein from Nicotiana tabacum)
- Es19 (40s ribosomal protein s19) (16 kDa, Protein from Nicotiana tabacum)
- Us2 (40s ribosomal protein sa) (35 kDa, Protein from Nicotiana tabacum)
Cryo-EM structure of the plant 60S subunit
Resolution: 2.14 Å
EM Method: Single-particle
Fitted PDBs: 8azw
Q-score: 0.675
Smirnova J, Loerke J, Kleinau G, Schmidt A, Burger J, Meyer EH, Mielke T, Scheerer P, Bock R, Spahn CMT, Zoschke R
Nat Plants (2023) 9 pp. 987-1000 [ Pubmed: 37156858 DOI: doi:10.1038/s41477-023-01407-y ]
- Spermidine (145 Da, Ligand)
- El28 (60s ribosomal protein l28) (15 kDa, Protein from Nicotiana tabacum)
- El32 (60s ribosomal protein l32) (15 kDa, Protein from Nicotiana tabacum)
- El42 (60s ribosomal protein l42) (12 kDa, Protein from Nicotiana tabacum)
- Ul15 (60s ribosomal protein l27a) (16 kDa, Protein from Nicotiana tabacum)
- 5.8s rrna (52 kDa, RNA from Nicotiana tabacum)
- Ul14 (60s ribosomal protein l23) (15 kDa, Protein from Nicotiana tabacum)
- El31 (60s ribosomal protein l31) (13 kDa, Protein from Nicotiana tabacum)
- Ul24 (60s ribosomal protein l26) (16 kDa, Protein from Nicotiana tabacum)
- Zinc ion (65 Da, Ligand)
- El20 (60s ribosomal protein l18a) (21 kDa, Protein from Nicotiana tabacum)
- El24 (60s ribosomal protein l24) (18 kDa, Protein from Nicotiana tabacum)
- El41 (60s ribosomal protein l41) (3 kDa, Protein from Nicotiana tabacum)
- El27 (60s ribosomal protein l27) (15 kDa, Protein from Nicotiana tabacum)
- El29 (60s ribosomal protein l29) (7 kDa, Protein from Nicotiana tabacum)
- Spermine (202 Da, Ligand)
- El22 (60s ribosomal protein l22) (14 kDa, Protein from Nicotiana tabacum)
- Ul3 (60s ribosomal protein l3) (44 kDa, Protein from Nicotiana tabacum)
- Ul16 (60s ribosomal protein l10) (25 kDa, Protein from Nicotiana tabacum)
- Potassium ion (39 Da, Ligand)
- El33 (60s ribosomal protein l35a) (12 kDa, Protein from Nicotiana tabacum)
- El13 (60s ribosomal protein l13) (23 kDa, Protein from Nicotiana tabacum)
- El21 (60s ribosomal protein l21) (18 kDa, Protein from Nicotiana tabacum)
- 25s rrna (1 MDa, RNA from Nicotiana tabacum)
- 40s subunit of the cytosolic 80s ribosome from tobacco (Complex from Nicotiana tabacum)
- Ul5 (60s ribosomal protein l11) (20 kDa, Protein from Nicotiana tabacum)
- Water (18 Da, Ligand)
- Ul29 (60s ribosomal protein l35) (14 kDa, Protein from Nicotiana tabacum)
- El39 (60s ribosomal protein l39) (6 kDa, Protein from Nicotiana tabacum)
- El19 (60s ribosomal protein l19) (25 kDa, Protein from Nicotiana tabacum)
- Ul18 (60s ribosomal protein l5) (34 kDa, Protein from Nicotiana tabacum)
- El30 (60s ribosomal protein l30) (12 kDa, Protein from Nicotiana tabacum)
- Ul23 (60s ribosomal protein l23a) (17 kDa, Protein from Nicotiana tabacum)
- Nascent chain (2 kDa, Protein from Nicotiana tabacum)
- Ul6 (60s ribosomal protein l9) (22 kDa, Protein from Nicotiana tabacum)
- El8 (60s ribosomal protein l7a) (29 kDa, Protein from Nicotiana tabacum)
- El34 (60s ribosomal protein l34) (13 kDa, Protein from Nicotiana tabacum)
- El38 (60s ribosomal protein l38) (8 kDa, Protein from Nicotiana tabacum)
- El37 (60s ribosomal protein l37) (10 kDa, Protein from Nicotiana tabacum)
- El43 (60s ribosomal protein l37a) (10 kDa, Protein from Nicotiana tabacum)
- Ul30 (60s ribosomal protein l7) (28 kDa, Protein from Nicotiana tabacum)
- Ul13 (60s ribosomal protein l13a) (23 kDa, Protein from Nicotiana tabacum)
- 5s rrna (38 kDa, RNA from Nicotiana tabacum)
- El40 (60s ribosomal protein l40) (14 kDa, Protein from Nicotiana tabacum)
- El18 (60s ribosomal protein l18) (20 kDa, Protein from Nicotiana tabacum)
- El15 (60s ribosomal protein l15) (24 kDa, Protein from Nicotiana tabacum)
- El6 (60s ribosomal protein l6) (25 kDa, Protein from Nicotiana tabacum)
- Ul2 (60s ribosomal protein l8) (28 kDa, Protein from Nicotiana tabacum)
- Ul4 (60s ribosomal protein l4) (44 kDa, Protein from Nicotiana tabacum)
- Magnesium ion (24 Da, Ligand)
- El36 (60s ribosomal protein l36) (12 kDa, Protein from Nicotiana tabacum)
- Ul22 (60s ribosomal protein l17) (20 kDa, Protein from Nicotiana tabacum)
- El14 (60s ribosomal protein l14) (15 kDa, Protein from Nicotiana tabacum)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6gz3
Q-score: 0.365
Flis J, Holm M, Rundlet EJ, Loerke J, Hilal T, Dabrowski M, Burger J, Mielke T, Blanchard SC, Spahn CMT, Budkevich TV
Cell Rep (2018) 25 pp. 2676-2688.e7 [ Pubmed: 30517857 DOI: doi:10.1016/j.celrep.2018.11.040 ]
- Ribosomal protein us19 (14 kDa, Protein from Rabbit)
- Ribosomal protein es17 (14 kDa, Protein from Rabbit)
- Ribosomal protein s28 (7 kDa, Protein from Rabbit)
- Ribosomal protein s11 (17 kDa, Protein from Rabbit)
- Ribosomal protein el40 (5 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l8 (27 kDa, Protein from Rabbit)
- Ribosomal protein rack 1 (34 kDa, Protein from Rabbit)
- Ribosomal protein ul10 (22 kDa, Protein from Rabbit)
- 40s ribosomal protein s7 (20 kDa, Protein from Rabbit)
- Ribosomal protein ul15 (16 kDa, Protein from Rabbit)
- Ribosomal protein ul22 (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es27 (9 kDa, Protein from Rabbit)
- Ribosomal protein ul6 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es21 (8 kDa, Protein from Rabbit)
- 60s ribosomal protein l27 (15 kDa, Protein from Rabbit)
- Ribosome (Complex from Oryctolagus cuniculus)
- Ribosomal protein ul30 (27 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el38 (8 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el34 (12 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l10 (predicted) (24 kDa, Protein from Rabbit)
- Ribosomal protein s27a (8 kDa, Protein from Rabbit)
- Ribosomal protein el42 (12 kDa, Protein from Rabbit)
- Ribosomal protein es4 (28 kDa, Protein from Rabbit)
- Zinc ion (65 Da, Ligand)
- Ribosomal protein s9 (predicted) (21 kDa, Protein from Rabbit)
- Ribosomal protein el43 (10 kDa, Protein from Rabbit)
- Ribosomal protein l15 (24 kDa, Protein from Rabbit)
- 28s ribosomal rna (1 MDa, RNA from Rabbit)
- 40s ribosomal protein s12 (13 kDa, Protein from Rabbit)
- Ribosomal protein ul4 (41 kDa, Protein from Rabbit)
- Ribosomal protein el8 (26 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s23 (15 kDa, Protein from Rabbit)
- Ribosomal protein el24 (14 kDa, Protein from Rabbit)
- Ribosomal protein us9 (15 kDa, Protein from Rabbit)
- Ribosomal protein es25 (9 kDa, Protein from Rabbit)
- Ribosomal protein es26 (11 kDa, Protein from Rabbit)
- Ribosomal protein el21 (18 kDa, Protein from Rabbit)
- Ribosomal protein l23 (13 kDa, Protein from Rabbit)
- Ribosomal protein el39 (6 kDa, Protein from Rabbit)
- Ribosomal protein us11 (14 kDa, Protein from Rabbit)
- 5.8s ribosomal rna (50 kDa, RNA from Rabbit)
- Ribosomal protein el13 (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l12 (16 kDa, Protein from Rabbit)
- Ribosomal protein el20 (20 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es24 (14 kDa, Protein from Rabbit)
- Ribosomal protein us13 (16 kDa, Protein from Rabbit)
- 18s ribosomal rna (551 kDa, RNA from Rabbit)
- Ap/p-site trna (24 kDa, RNA from Rabbit)
- Ribosomal protein (24 kDa, Protein from Rabbit)
- 40s ribosomal protein s6 (26 kDa, Protein from Rabbit)
- Ribosomal protein el14 (16 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us3 (24 kDa, Protein from Rabbit)
- Ribosomal protein us14 (6 kDa, Protein from Rabbit)
- Trna (Complex from Saccharomyces cerevisiae)
- Ribosomal protein el29 (7 kDa, Protein from Rabbit)
- Ribosomal protein ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic elongation factor 2 (eef2) (95 kDa, Protein from Rabbit)
- Ribosomal protein el18 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es8 (24 kDa, Protein from Rabbit)
- Ribosomal protein l37 (9 kDa, Protein from Rabbit)
- Ribosomal protein el6 (22 kDa, Protein from Rabbit)
- Ribosomal protein es30 (6 kDa, Protein from Rabbit)
- Ribosomal protein ul3 (45 kDa, Protein from Rabbit)
- Ribosomal protein us5 (24 kDa, Protein from Rabbit)
- Ribosomal protein el32 (15 kDa, Protein from Rabbit)
- Ribosomal protein el19 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el30 (11 kDa, Protein from Rabbit)
- Mrna (3 kDa, RNA from Enterobacteria phage SP6)
- Ribosomal protein el36 (11 kDa, Protein from Rabbit)
- 40s ribosomal protein s3a (24 kDa, Protein from Rabbit)
- Pe/e-site-trna (24 kDa, RNA from Saccharomyces cerevisiae)
- Ribosomal protein es10 (11 kDa, Protein from Rabbit)
- Ribosomal protein us10 (11 kDa, Protein from Rabbit)
- Ribosomal protein l26 (15 kDa, Protein from Rabbit)
- Ribosomal protein ul13 (22 kDa, Protein from Oryctolagus cuniculus)
- Mrna (Complex from Enterobacteria phage SP6)
- Ribosomal protein el33 (12 kDa, Protein from Rabbit)
- Ribosomal protein us15 (17 kDa, Protein from Rabbit)
- Translocation intermediate ti-post-1 (4 MDa, Complex)
- Ribosomal protein es19 (15 kDa, Protein from Rabbit)
- Ribosomal protein l11 (19 kDa, Protein from Rabbit)
- Ribosomal protein s5 (21 kDa, Protein from Rabbit)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- Ribosomal protein el28 (13 kDa, Protein from Rabbit)
- Ribosomal protein ul18 (34 kDa, Protein from Rabbit)
- Ribosomal protein s15a (14 kDa, Protein from Rabbit)
- Ribosomal protein us2 (24 kDa, Protein from Rabbit)
- Ribosomal protein el31 (12 kDa, Protein from Rabbit)
- Magnesium ion (24 Da, Ligand)
- Ribosomal protein ul23 (13 kDa, Protein from Rabbit)
- Ribosomal protein el22 (11 kDa, Protein from Oryctolagus cuniculus)
- 5s ribosomal rna (38 kDa, RNA from Rabbit)
- Ribosomal protein el41 (3 kDa, Protein from Oryctolagus cuniculus)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6gz4
Q-score: 0.386
Flis J, Holm M, Rundlet EJ, Loerke J, Hilal T, Dabrowski M, Burger J, Mielke T, Blanchard SC, Spahn CMT, Budkevich TV
Cell Rep (2018) 25 pp. 2676-2688.e7 [ Pubmed: 30517857 DOI: doi:10.1016/j.celrep.2018.11.040 ]
- 28s ribosomal rna (1 MDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein us13 (16 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us2 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es19 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us7 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el40 (5 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es4 (28 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el6 (22 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul11 (16 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us9 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul10 (22 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul22 (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul6 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul23 (13 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul30 (27 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el38 (8 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul4 (41 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul16 (24 kDa, Protein from Oryctolagus cuniculus)
- Ap/p-site trna (24 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein us10 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul18 (34 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el31 (12 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el34 (12 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es26 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us19 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul14 (13 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es1 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul1 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el15 (24 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Ribosomal protein us3 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el30 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el28 (13 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el24 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el33 (12 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el36 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el8 (26 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul3 (45 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es12 (13 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us4 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us11 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us12 (15 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic elongation factor 2 (eef2) (95 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es17 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el13 (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el20 (20 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul5 (19 kDa, Protein from Oryctolagus cuniculus)
- Pe/e-site-trna (24 kDa, RNA from Oryctolagus cuniculus)
- 18s ribosomal rna (551 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein es21 (8 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us10 (9 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es31 (8 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul15 (16 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es28 (24 kDa, Protein from Oryctolagus cuniculus)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein us14 (6 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul24 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us8 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el14 (16 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es7 (20 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el29 (7 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el18 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el39 (6 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el43 (10 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es8 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es24 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es10 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el19 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el32 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es6 (26 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us15 (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el37 (9 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el21 (18 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul13 (22 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es27 (9 kDa, Protein from Oryctolagus cuniculus)
- 5.8s ribosomal rna (50 kDa, RNA from Oryctolagus cuniculus)
- Ti-post-2 (4 MDa, Complex from Oryctolagus cuniculus)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- Ribosomal protein us17 (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein rack 1 (34 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul2 (27 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el42 (12 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es28 (7 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el27 (15 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- Ribosomal protein es30 (6 kDa, Protein from Oryctolagus cuniculus)
- Mrna (3 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein el22 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el41 (3 kDa, Protein from Oryctolagus cuniculus)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6gz5
Q-score: 0.38
Flis J, Holm M, Rundlet EJ, Loerke J, Hilal T, Dabrowski M, Burger J, Mielke T, Blanchard SC, Spahn CMT, Budkevich TV
Cell Rep (2018) 25 pp. 2676-2688.e7 [ Pubmed: 30517857 DOI: doi:10.1016/j.celrep.2018.11.040 ]
- Ribosomal protein el27 (15 kDa, Protein from rabbit)
- Translocation intermediate ti-post-3 (Complex from Enterobacteria phage SP6)
- Ribosomal protein us2 (24 kDa, Protein from rabbit)
- Ribosomal protein us9 (15 kDa, Protein from rabbit)
- Translocation intermediate ti-post-3 (4 MDa, Complex)
- Ribosomal protein ul1 (24 kDa, Protein from rabbit)
- Ribosomal protein el21 (18 kDa, Protein from rabbit)
- Ribosomal protein ul29 (14 kDa, Protein from rabbit)
- Ribosomal protein us8 (14 kDa, Protein from rabbit)
- E/e-site-trna (24 kDa, RNA from baker's yeast)
- Ribosomal protein el30 (11 kDa, Protein from rabbit)
- Ribosomal protein us10 (11 kDa, Protein from rabbit)
- Ribosomal protein es21 (8 kDa, Protein from rabbit)
- Ribosomal protein ul16 (24 kDa, Protein from rabbit)
- Ribosomal protein us19 (14 kDa, Protein from rabbit)
- Ribosomal protein ul5 (19 kDa, Protein from rabbit)
- Ribosomal protein el20 (20 kDa, Protein from rabbit)
- Ribosomal protein ul2 (27 kDa, Protein from rabbit)
- Ribosomal protein ul15 (16 kDa, Protein from rabbit)
- Ribosomal protein es4 (28 kDa, Protein from rabbit)
- Ribosomal protein ul14 (13 kDa, Protein from rabbit)
- Ribosomal protein es31 (8 kDa, Protein from rabbit)
- Ribosomal protein el8 (26 kDa, Protein from rabbit)
- Ribosomal protein es24 (14 kDa, Protein from rabbit)
- P/p-site-trna (24 kDa, RNA from rabbit)
- Ribosomal protein ul30 (27 kDa, Protein from rabbit)
- Ribosomal protein ul23 (13 kDa, Protein from rabbit)
- Ribosomal protein es12 (13 kDa, Protein from rabbit)
- Translocation intermediate ti-post-3 (Complex from Oryctolagus cuniculus)
- Ribosomal protein ul3 (45 kDa, Protein from rabbit)
- Ribosomal protein es26 (11 kDa, Protein from rabbit)
- Ribosomal protein el40 (5 kDa, Protein from rabbit)
- Ribosomal protein el36 (11 kDa, Protein from rabbit)
- 5.8s ribosomal rna (50 kDa, RNA from rabbit)
- Ribosomal protein es7 (20 kDa, Protein from rabbit)
- Ribosomal protein el22 (11 kDa, Protein from rabbit)
- Ribosomal protein us15 (17 kDa, Protein from rabbit)
- Ribosomal protein ul22 (17 kDa, Protein from rabbit)
- Ribosomal protein el15 (24 kDa, Protein from rabbit)
- Ribosomal protein es10 (11 kDa, Protein from rabbit)
- Ribosomal protein el43 (10 kDa, Protein from rabbit)
- Ribosomal protein el41 (3 kDa, Protein from rabbit)
- Ribosomal protein us3 (24 kDa, Protein from rabbit)
- Ribosomal protein ul13 (22 kDa, Protein from rabbit)
- Ribosomal protein us13 (16 kDa, Protein from rabbit)
- Ribosomal protein rack 1 (34 kDa, Protein from rabbit)
- Ribosomal protein us5 (24 kDa, Protein from rabbit)
- Ribosomal protein el31 (12 kDa, Protein from rabbit)
- Ribosomal protein el6 (22 kDa, Protein from rabbit)
- Ribosomal protein es17 (14 kDa, Protein from rabbit)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- Ribosomal protein es25 (9 kDa, Protein from rabbit)
- Ribosomal protein ul4 (41 kDa, Protein from rabbit)
- 28s ribosomal rna (1 MDa, RNA from rabbit)
- Ribosomal protein el42 (12 kDa, Protein from rabbit)
- Ribosomal protein el29 (7 kDa, Protein from rabbit)
- Ribosomal protein el28 (13 kDa, Protein from rabbit)
- Ribosomal protein es8 (24 kDa, Protein from rabbit)
- Ribosomal protein el32 (15 kDa, Protein from rabbit)
- Ribosomal protein es6 (26 kDa, Protein from rabbit)
- Ribosomal protein us14 (6 kDa, Protein from Enterobacteria phage SP6)
- Ribosomal protein el39 (6 kDa, Protein from rabbit)
- Ribosomal protein el13 (23 kDa, Protein from rabbit)
- Ribosomal protein es27 (9 kDa, Protein from rabbit)
- Ribosomal protein us4 (21 kDa, Protein from rabbit)
- Ribosomal protein es19 (15 kDa, Protein from rabbit)
- Ribosomal protein el24 (14 kDa, Protein from rabbit)
- Ribosomal protein ul10 (22 kDa, Protein from rabbit)
- Ribosomal protein ul18 (34 kDa, Protein from rabbit)
- Eukaryotic elongation factor 2 (eef2) (95 kDa, Protein from rabbit)
- 5s ribosomal rna (38 kDa, RNA from rabbit)
- Ribosomal protein es30 (6 kDa, Protein from rabbit)
- Zinc ion (65 Da, Ligand)
- Ribosomal protein us11 (14 kDa, Protein from rabbit)
- Ribosomal protein ul11 (16 kDa, Protein from rabbit)
- Ribosomal protein us17 (17 kDa, Protein from rabbit)
- Mrna (3 kDa, RNA from Enterobacteria phage SP6)
- Ribosomal protein el33 (12 kDa, Protein from rabbit)
- Ribosomal protein us7 (21 kDa, Protein from rabbit)
- Ribosomal protein ul6 (21 kDa, Protein from rabbit)
- Ribosomal protein el38 (8 kDa, Protein from rabbit)
- 18s ribosomal rna (551 kDa, RNA from rabbit)
- Ribosomal protein el34 (12 kDa, Protein from rabbit)
- Ribosomal protein el19 (21 kDa, Protein from rabbit)
- Ribosomal protein ul24 (15 kDa, Protein from rabbit)
- Ribosomal protein el37 (9 kDa, Protein from rabbit)
- Ribosomal protein us12 (15 kDa, Protein from rabbit)
- Ribosomal protein es1 (24 kDa, Protein from rabbit)
- Translocation intermediate ti-post-3 (Complex from Saccharomyces cerevisiae)
- Ribosomal protein es28 (7 kDa, Protein from rabbit)
- Ribosomal protein el14 (16 kDa, Protein from rabbit)
- Magnesium ion (24 Da, Ligand)
- Ribosomal protein el18 (21 kDa, Protein from rabbit)